BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBB9c12.pg.2.1
(545 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ888635.1|AJ888635 AJ888635 Triticum aestivum cv. Fidel... 70 2e-010
gb|BQ161878.1|BQ161878 WHE0483_h04_o07zT Wheat Fusarium gra... 60 2e-007
gb|CA637260.1|CA637260 wre1.pk0001.a12 wre1 Triticum aestiv... 60 2e-007
gb|CD918814.1|CD918814 G608.110O20F010910 G608 Triticum aes... 60 2e-007
gb|CD877708.1|CD877708 AZO4.100O15F010925 AZO4 Triticum aes... 58 7e-007
gb|CA735840.1|CA735840 wpi1s.pk005.h17 wpi1s Triticum aesti... 46 0.002
gb|CV760095.1|CV760095 FGAS054479 Triticum aestivum FGAS: L... 46 0.002
gb|CD490938.1|CD490938 WHE3008_H01_P02ZT Wheat etiolated se... 44 0.010
gb|BJ261476.1|BJ261476 BJ261476 Y. Ogihara unpublished cDNA... 42 0.039
>gb|AJ888635.1|AJ888635 AJ888635 Triticum aestivum cv. Fidel leaf Triticum aestivum cDNA
clone OA_a3B03, mRNA sequence
Length = 437
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 4 ggagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaa 63
|||||||||||||||| ||| |||||| || ||||| || | |||||||| ||||| ||
Sbjct: 214 ggagcttggcaatggactgtgcaattccggtaaaccttttctctgggttgtaaggtccaa 273
Query: 64 cgaagaacacaagttgtccaatgaact 90
||| ||||||||||| ||||| |||||
Sbjct: 274 cgaggaacacaagttatccaaagaact 300
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgt 225
||||||||||||||| | || ||| |||||||||||||
Sbjct: 398 ggatggaactcgacactagaggcacttgttaatggtgt 435
>gb|BQ161878.1|BQ161878 WHE0483_h04_o07zT Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE0483_h04_o07,
mRNA sequence
Length = 633
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 317 gatgagaaaggcttggtaacgagggacgaggtggaaaggtgcatca 362
||||||||||||||||| | |||||| |||||||| ||||||||||
Sbjct: 392 gatgagaaaggcttggtgaggagggaggaggtggagaggtgcatca 347
>gb|CA637260.1|CA637260 wre1.pk0001.a12 wre1 Triticum aestivum cDNA clone wre1.pk0001.a12
5' end, mRNA sequence
Length = 264
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 9 ttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaacgaag 68
||||||||||| ||| |||||| || ||||| || | |||||||| ||||| ||||| |
Sbjct: 47 ttggcaatggactgtgcaattccggtaaaccttttctctgggttgtaaggtccaacgagg 106
Query: 69 aacacaagttgtccaatgaact 90
|||||||||| ||||| |||||
Sbjct: 107 aacacaagttatccaaagaact 128
>gb|CD918814.1|CD918814 G608.110O20F010910 G608 Triticum aestivum cDNA clone G608110O20,
mRNA sequence
Length = 542
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 119 attgtttcttggtgcccccagctggaagttctagcaca 156
||||||||||||||||||||||| || |||||||||||
Sbjct: 257 attgtttcttggtgcccccagcttgaggttctagcaca 294
>gb|CD877708.1|CD877708 AZO4.100O15F010925 AZO4 Triticum aestivum cDNA clone AZO4100O15,
mRNA sequence
Length = 757
Score = 58.0 bits (29), Expect = 7e-007
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 126 cttggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacatt 185
|||||||||||||||| || ||||| || ||||| || | |||||| ||||| || ||||
Sbjct: 628 cttggtgcccccagcttgaggttctcgcgcataaggccataggttgcttcttgactcatt 687
Query: 186 gcggatggaactc 198
| |||||||||||
Sbjct: 688 gtggatggaactc 700
>gb|CA735840.1|CA735840 wpi1s.pk005.h17 wpi1s Triticum aestivum cDNA clone wpi1s.pk005.h17
5' end, mRNA sequence
Length = 532
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 119 attgtttcttggtgcccccagctggaagttctagc 153
|||||||||||||||||||| || || ||||||||
Sbjct: 128 attgtttcttggtgcccccaacttgaggttctagc 94
Score = 42.1 bits (21), Expect = 0.039
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 4 ggagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaa 63
||||||||||||||| | | |||||||||||| | || || |||||||| ||||| ||
Sbjct: 243 ggagcttggcaatgggatatgtaattctggcaaatcttttatatgggttgttaggtccaa 184
Query: 64 cgaagaacacaag 76
||| | |||||||
Sbjct: 183 cgaggcacacaag 171
>gb|CV760095.1|CV760095 FGAS054479 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 829
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 119 attgtttcttggtgcccccagctggaagttctagc 153
|||||||||||||||||||| || || ||||||||
Sbjct: 435 attgtttcttggtgcccccaacttgaggttctagc 469
Score = 42.1 bits (21), Expect = 0.039
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 4 ggagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaa 63
||||||||||||||| | | |||||||||||| | || || |||||||| ||||| ||
Sbjct: 320 ggagcttggcaatgggatatgtaattctggcaaatcttttatatgggttgttaggtccaa 379
Query: 64 cgaagaacacaag 76
||| | |||||||
Sbjct: 380 cgaggcacacaag 392
>gb|CD490938.1|CD490938 WHE3008_H01_P02ZT Wheat etiolated seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE3008_H01_P02,
mRNA sequence
Length = 572
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgt 225
||||||||||||||| | || ||| |||||||||||||
Sbjct: 503 ggatggaactcgacactagaggcacttgttaatggtgt 466
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 415 gtggatgcaaaaggccaagg 434
||||||||||||||||||||
Sbjct: 276 gtggatgcaaaaggccaagg 257
>gb|BJ261476.1|BJ261476 BJ261476 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh3b19 3', mRNA sequence
Length = 481
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 171 gtttcttcacacattgcggatggaactcgacattgga 207
||||||| || |||||||| |||||||||||| ||||
Sbjct: 411 gtttcttgacccattgcgggtggaactcgacactgga 375
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,426
Number of Sequences: 636343
Number of extensions: 92426
Number of successful extensions: 24472
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24448
Number of HSP's gapped (non-prelim): 22
length of query: 545
length of database: 367,240,239
effective HSP length: 19
effective length of query: 526
effective length of database: 355,149,722
effective search space: 186808753772
effective search space used: 186808753772
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)