BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ4d09.yg.2.1
(542 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA593225.1|CA593225 wpa1c.pk003.n16 wpa1c Triticum aesti... 174 4e-042
gb|BI479667.1|BI479667 WHE3456_F05_K10ZS Wheat pre-anthesis... 109 2e-022
>gb|CA593225.1|CA593225 wpa1c.pk003.n16 wpa1c Triticum aestivum cDNA clone wpa1c.pk003.n16
5' end, mRNA sequence
Length = 535
Score = 174 bits (88), Expect = 4e-042
Identities = 219/260 (84%), Gaps = 2/260 (0%)
Strand = Plus / Plus
Query: 58 tggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgccggaatg 117
|||||||||||||||||||||||||||||||| || || |||||||||| |||||| |
Sbjct: 125 tggaggaaggtgatgccttacatggccatggtcttcctgcagttcggctacgccgggctc 184
Query: 118 ttcctcatctccgtcgcgtccctgcggcagggaatg-agccactatgtccttgttgtcta 176
|||||| ||||||||||||| ||||| ||||| ||| |||||||| ||||| || |||||
Sbjct: 185 ttcctcctctccgtcgcgtcgctgcgccagggcatgaagccactacgtcctcgtcgtcta 244
Query: 177 cc-ggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagaggaaaa 235
|| |||||| | || ||| || ||||||||| |||||||||||||||||||||||||
Sbjct: 245 ccgggaacgccatcgccgccgctgccatggctcccttcgcgctatggtttgagaggaaaa 304
Query: 236 caaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactcgaac 295
|||||| ||||||| ||| | ||||| ||||||| ||||| ||| | |||||||||
Sbjct: 305 caaggcgcaaaatgaccctctccctgttctacaagatcgttgctctggcactactcgaac 364
Query: 296 ccgtgcttgaccaaaacttc 315
| | |||||||||||||||
Sbjct: 365 caatccttgaccaaaacttc 384
>gb|BI479667.1|BI479667 WHE3456_F05_K10ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3456_F05_K10, mRNA sequence
Length = 244
Score = 109 bits (55), Expect = 2e-022
Identities = 196/243 (80%)
Strand = Plus / Plus
Query: 73 ccttacatggccatggtgtttcttcagttcggcttcgccggaatgttcctcatctccgtc 132
||||||||||||||||| || || |||||||||| |||||| | |||||| ||||||||
Sbjct: 1 ccttacatggccatggtcttcctccagttcggctacgccgggctcttcctcctctccgtc 60
Query: 133 gcgtccctgcggcagggaatgagccactatgtccttgttgtctaccggaacgtagtggca 192
||||| |||| ||||| ||||||||||| ||||| || ||||||||||||| | ||
Sbjct: 61 gcgtcgttgcgtcagggcatgagccactacgtcctcgtcgtctaccggaacgccatcgcc 120
Query: 193 gccattgtcatggctccattcgcgctatggtttgagaggaaaacaaggcctaaaatgagc 252
||| || ||||||||| |||||||||| ||||| ||||||||||| ||||||| |
Sbjct: 121 gccgctgccatggctccgttcgcgctattgtttgttgagaaaacaaggcgcaaaatgacc 180
Query: 253 ctaccggtgttcatcaagatccttgctttgggattactcgaacccgtgcttgaccaaaac 312
|| | ||||| ||||||| | ||| ||| | ||||||| || || |||||||| |||
Sbjct: 181 ctctccctgttctacaagatcgtcgctctggcactactcgagccagtccttgaccagaac 240
Query: 313 ttc 315
|||
Sbjct: 241 ttc 243
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,804
Number of Sequences: 636343
Number of extensions: 92804
Number of successful extensions: 22841
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22836
Number of HSP's gapped (non-prelim): 4
length of query: 542
length of database: 367,240,239
effective HSP length: 19
effective length of query: 523
effective length of database: 355,149,722
effective search space: 185743304606
effective search space used: 185743304606
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)