BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3d03.yg.2.1
(557 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG606256.1|BG606256 WHE2962_F04_L08ZS Wheat dormant embr... 206 1e-051
gb|CF133398.1|CF133398 WHE4357_E10_J19ZT Wheat meiotic flor... 176 1e-042
gb|BJ248053.1|BJ248053 BJ248053 Y. Ogihara unpublished cDNA... 167 1e-039
gb|BU100218.1|BU100218 WHE3316_F04_L08ZS Chinese Spring whe... 56 3e-006
>gb|BG606256.1|BG606256 WHE2962_F04_L08ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2962_F04_L08, mRNA sequence
Length = 528
Score = 206 bits (104), Expect = 1e-051
Identities = 192/226 (84%)
Strand = Plus / Minus
Query: 24 aagacaccagatggggtagaaattgcagacnangggacatgaggctnnnntctgtatctg 83
||||||||||||||||||| ||| |||||| | || ||||| |||| ||||||||||
Sbjct: 386 aagacaccagatggggtagtaatagcagaccatggaacatggggctcgcttctgtatctg 327
Query: 84 canaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgatgat 143
|| | ||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 326 catatcatgtgatgatttctgaatggatcaccaaaatctagcatgcaggtgtgcgagggc 267
Query: 144 gaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgtttgtg 203
|||||| ||||||| ||||| || |||||||||||||||||| ||| |||||||
Sbjct: 266 gagggggcaccaagagggacttcagacccatacatgacaagagggtttgaatggtttgtg 207
Query: 204 acatcataaacatttaccaccaattnctgattgccagctagctgcc 249
|||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 206 acatcataaacattcaccaccagctcctgattgccagctagctgcc 161
>gb|CF133398.1|CF133398 WHE4357_E10_J19ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4357_E10_J19, mRNA sequence
Length = 760
Score = 176 bits (89), Expect = 1e-042
Identities = 186/223 (83%)
Strand = Plus / Minus
Query: 27 acaccagatggggtagaaattgcagacnangggacatgaggctnnnntctgtatctgcan 86
|||||||| ||||||| ||| |||||| | || ||||| |||| ||||||||||||
Sbjct: 556 acaccagacggggtagtaatagcagaccatggaacatggggctcgcttctgtatctgcat 497
Query: 87 accatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgatgatgag 146
| ||| ||||| ||||||||||||||||||||||| ||| ||||| |||| || | ||||
Sbjct: 496 atcatgtgatgatttctgaatggatcaccaaaatcaagcgtgcaggtgtgtgagggtgag 437
Query: 147 gggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgtttgtgaca 206
||| ||||||| ||||| || ||||||||||||||| |||||| ||||||||||
Sbjct: 436 ggggcaccaagagggacttcagacccatacatgacaagaggattcgaatggtttgtgaca 377
Query: 207 tcataaacatttaccaccaattnctgattgccagctagctgcc 249
||||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 376 tcataaacattcaccaccagctcctgattgccagctagctgcc 334
>gb|BJ248053.1|BJ248053 BJ248053 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf4l08 5', mRNA sequence
Length = 459
Score = 167 bits (84), Expect = 1e-039
Identities = 183/221 (82%)
Strand = Plus / Minus
Query: 29 accagatggggtagaaattgcagacnangggacatgaggctnnnntctgtatctgcanac 88
|||||||||||||| ||| |||||| | || ||||| |||| |||||||||||| |
Sbjct: 459 accagatggggtagtaatagcagaccatggaacatggggctcgcttctgtatctgcatat 400
Query: 89 catatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgatgatgaggg 148
||| ||||| |||||||| |||||||||||||||||| ||||| |||| || | ||||||
Sbjct: 399 catgtgatgatttctgaacggatcaccaaaatctagcgtgcaggtgtgtgagggtgaggg 340
Query: 149 gnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgtttgtgacatc 208
| ||||||| ||||| || ||||||| ||||||| || ||| ||||||||||||
Sbjct: 339 ggcaccaagagggacttcagacccatacatgncaagaggatttgaatggtttgtgacatc 280
Query: 209 ataaacatttaccaccaattnctgattgccagctagctgcc 249
||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 279 ataaacattgaccaccagctcctgattgccagctagctgcc 239
>gb|BU100218.1|BU100218 WHE3316_F04_L08ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3316_F04_L08,
mRNA sequence
Length = 686
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 24 aagacaccagatggggtagaaattgcagacnangggacatgaggctnnnntctgtatctg 83
||||||||||||||||||| ||| |||||| | || ||||| |||| ||||||||||
Sbjct: 180 aagacaccagatggggtagtaatagcagaccatggaacatggggctcgcttctgtatctg 121
Query: 84 ca 85
||
Sbjct: 120 ca 119
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,771
Number of Sequences: 636343
Number of extensions: 34771
Number of successful extensions: 7889
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7881
Number of HSP's gapped (non-prelim): 8
length of query: 557
length of database: 367,240,239
effective HSP length: 19
effective length of query: 538
effective length of database: 355,149,722
effective search space: 191070550436
effective search space used: 191070550436
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)