BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAT2e04.yg.2.1
(424 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ612129.1|AJ612129 AJ612129 Triticum turgidum subsp. du... 353 6e-096
gb|BU100200.1|BU100200 WHE3316_D08_H16ZS Chinese Spring whe... 351 2e-095
gb|BJ249054.1|BJ249054 BJ249054 Y. Ogihara unpublished cDNA... 347 4e-094
gb|AL830360.1|AL830360 AL830360 q:343 Triticum aestivum cDN... 70 1e-010
gb|BJ314578.1|BJ314578 BJ314578 Y. Ogihara unpublished cDNA... 46 0.002
gb|BJ320066.1|BJ320066 BJ320066 Y. Ogihara unpublished cDNA... 46 0.002
gb|AL825824.1|AL825824 AL825824 p:234 Triticum aestivum cDN... 46 0.002
gb|BE427501.1|BE427501 PSR7098 ITEC PSR Wheat Pericarp/Test... 40 0.12
gb|CD896084.1|CD896084 G174.101M16F010821 G174 Triticum aes... 40 0.12
gb|CN008830.1|CN008830 WHE2645_F07_K13ZE Wheat Fusarium gra... 38 0.47
>gb|AJ612129.1|AJ612129 AJ612129 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 06183R, mRNA
sequence
Length = 597
Score = 353 bits (178), Expect = 6e-096
Identities = 308/350 (88%), Gaps = 1/350 (0%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
||||| |||||||||||||| |||||||| || | ||||||||||||||||| | ||||
Sbjct: 213 cttccgaaggcacatcctagtttttctctgcaaaatgtcttggaaatgtctgataagtgg 272
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| |||||||||||||||| || || ||||| |||||||| ||||| || |||
Sbjct: 273 aaggctcgccctgtgccagaggaaccgattcagctttttatcggcattctctctgctaca 332
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || ||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 333 aaccattttgctgagcggatggctattagaaaaacttggatgcagtttcctgcaatccaa 392
Query: 192 tcggggaatgcggttgctcggttctttgttgcgctgagccacagaaaggagataaatgca 251
| ||| |||| ||||||||| |||||||| || |||||||| ||||| ||||||||||||
Sbjct: 393 ttgggaaatgtggttgctcgattctttgtcgcactgagccatagaaaagagataaatgca 452
Query: 252 gcactgaagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccgg 311
||||| |||||||||||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 453 gcactaaagaaggaagcagaatattttggagacgttgtcattctgccatttatcgaccgg 512
Query: 312 tatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgca 361
|||||| | |||||||| |||| |||||||||||||| |||||||||||
Sbjct: 513 tatgagttggtggttct-caaacagttgcgatatgtcagtacggggtgca 561
>gb|BU100200.1|BU100200 WHE3316_D08_H16ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3316_D08_H16,
mRNA sequence
Length = 682
Score = 351 bits (177), Expect = 2e-095
Identities = 313/357 (87%), Gaps = 1/357 (0%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
||||| |||||||||||||| |||||||| || | ||||||||||||||||| | ||||
Sbjct: 321 cttccgaaggcacatcctagtttttctctgcaaaatgtcttggaaatgtctgataagtgg 380
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| |||||||||||||||| || || ||||| |||||||| ||||| || |||
Sbjct: 381 aaggctcgccctgtgccagaggaaccgattcagctttttatcggcattctctctgctaca 440
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || ||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 441 aaccattttgctgagcggatggctattagaaaaacttggatgcagtttcctgcaatccaa 500
Query: 192 tcggggaatgcggttgctcggttctttgttgcgctgagccacagaaaggagataaatgca 251
| ||| |||| ||||||||| |||||||| || |||||||| ||||| ||||||||||||
Sbjct: 501 ttgggaaatgtggttgctcgattctttgtcgcactgagccatagaaaagagataaatgca 560
Query: 252 gcactgaagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccgg 311
||||| |||||||||||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 561 gcactaaagaaggaagcagaatattttggagacgttgtcattctgccatttatcgaccgg 620
Query: 312 tatgagctagtggttctgaaaac-ggttgcgatatgtcaatacggggtgcacaatgt 367
|||||| | |||||||| ||||| | ||||||||||||| ||||||| ||| |||||
Sbjct: 621 tatgagttggtggttctcaaaacagtttgcgatatgtcagtacggggggcaaaatgt 677
>gb|BJ249054.1|BJ249054 BJ249054 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23d05 5', mRNA sequence
Length = 629
Score = 347 bits (175), Expect = 4e-094
Identities = 307/350 (87%), Gaps = 1/350 (0%)
Strand = Plus / Plus
Query: 76 ctcgcactgtgccag-aggaaccaatccatcttttcatcggcatcctctccgccacaaac 134
||||| ||||||||| || |||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 1 ctcgccctgtgccagnagnaaccgattcagctttttatcggcattctctctgctacaaac 60
Query: 135 catttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaatcg 194
||||| || ||||| ||||||||||| |||||||||||||||||||| || ||||||| |
Sbjct: 61 cattttgctgagcggatggctattagaaaaacttggatgcagtttcctgcaatccaattg 120
Query: 195 gggaatgcggttgctcggttctttgttgcgctgagccacagaaaggagataaatgcagca 254
|| |||| ||||||||| |||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 121 ggaaatgtggttgctcgattctttgtcgcactgagccatagaaaagagataaatgcagca 180
Query: 255 ctgaagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtat 314
|| |||||||||||||| |||||||||||| | ||||||||||| || ||||||||||||
Sbjct: 181 ctaaagaaggaagcagaatattttggagacgttgtcattctgccatttatcgaccggtat 240
Query: 315 gagctagtggttctgaaaacggttgcgatatgtcaatacggggtgcacaatgtcactgca 374
||| | |||||||| ||||| |||||||||||||| ||||||||||| ||||| || |||
Sbjct: 241 gagttggtggttctcaaaacagttgcgatatgtcagtacggggtgcaaaatgttaccgca 300
Query: 375 gattacatcatgaagtgcgacgatgacacctttgtgcggctggatatagt 424
|| || |||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct: 301 gagtatatcatgaagtgcgacgatgatacctttgtgaggctggatgtagt 350
>gb|AL830360.1|AL830360 AL830360 q:343 Triticum aestivum cDNA clone D08_q343_plate_4, mRNA
sequence
Length = 616
Score = 69.9 bits (35), Expect = 1e-010
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 256 tgaagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtatg 315
|||| ||||||||||| | |||||| ||||| |||||| |||| ||||| ||||| ||||
Sbjct: 126 tgaaaaaggaagcagaattttttggggacattgtcattgtgccattcatggaccgctatg 185
Query: 316 agctagtggttctgaaaacggttgcgatatg 346
| || || |||||||| |||||||| |||||
Sbjct: 186 atctggttgttctgaagacggttgccatatg 216
>gb|BJ314578.1|BJ314578 BJ314578 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf13f10 5', mRNA sequence
Length = 703
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 108 ttcatcggcatcctctccgccacaaaccatttcgccgagcgcatggc 154
|||||||||||||| || || | ||||||||||||||||| |||||
Sbjct: 159 ttcatcggcatcctttctgcagccaaccatttcgccgagcggatggc 205
>gb|BJ320066.1|BJ320066 BJ320066 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf13f10 3', mRNA sequence
Length = 757
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 108 ttcatcggcatcctctccgccacaaaccatttcgccgagcgcatggc 154
|||||||||||||| || || | ||||||||||||||||| |||||
Sbjct: 756 ttcatcggcatcctttctgcagccaaccatttcgccgagcggatggc 710
>gb|AL825824.1|AL825824 AL825824 p:234 Triticum aestivum cDNA clone H03_p234_plate_16, mRNA
sequence
Length = 538
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 108 ttcatcggcatcctctccgccacaaaccatttcgccgagcgcatggc 154
|||||||||||||| || || | ||||||||||||||||| |||||
Sbjct: 27 ttcatcggcatcctttctgcagccaaccatttcgccgagcggatggc 73
>gb|BE427501.1|BE427501 PSR7098 ITEC PSR Wheat Pericarp/Testa Library Triticum aestivum
cDNA clone PSR7098, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 237 aaggagataaatgcagcactgaag 260
||||||||| ||||||||||||||
Sbjct: 192 aaggagatagatgcagcactgaag 215
>gb|CD896084.1|CD896084 G174.101M16F010821 G174 Triticum aestivum cDNA clone G174101M16,
mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 237 aaggagataaatgcagcactgaag 260
||||||||| ||||||||||||||
Sbjct: 250 aaggagatagatgcagcactgaag 273
>gb|CN008830.1|CN008830 WHE2645_F07_K13ZE Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2645_F07_K13,
mRNA sequence
Length = 519
Score = 38.2 bits (19), Expect = 0.47
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 132 aaccatttcgccgagcgcatggc 154
||||||||||||||||| |||||
Sbjct: 122 aaccatttcgccgagcggatggc 144
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,474
Number of Sequences: 636343
Number of extensions: 68474
Number of successful extensions: 18070
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18052
Number of HSP's gapped (non-prelim): 16
length of query: 424
length of database: 367,240,239
effective HSP length: 19
effective length of query: 405
effective length of database: 355,149,722
effective search space: 143835637410
effective search space used: 143835637410
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)