BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS4c05.yg.2.1
(318 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ259682.1|BJ259682 BJ259682 Y. Ogihara unpublished cDNA... 90 1e-016
gb|AF347067.1| Triticum aestivum sucrose-phosphate synthase... 90 1e-016
gb|BI479606.1|BI479606 WHE3455_H02_O03ZS Wheat pre-anthesis... 80 1e-013
gb|BE500424.1|BE500424 WHE0987-0990_O07_O07ZS Wheat pre-ant... 52 2e-005
gb|BG263365.1|BG263365 WHE2341_B06_C11ZS Wheat pre-anthesis... 52 2e-005
gb|AF347068.1| Triticum aestivum sucrose-phosphate synthase... 52 2e-005
gb|BJ256105.1|BJ256105 BJ256105 Y. Ogihara unpublished cDNA... 40 0.088
gb|BE492579.1|BE492579 WHE0554_F01_F01ZE Triticum monococcu... 38 0.35
gb|CA699220.1|CA699220 wlk8.pk0016.d5 wlk8 Triticum aestivu... 38 0.35
gb|CK204194.1|CK204194 FGAS012729 Triticum aestivum FGAS: L... 38 0.35
gb|CK216509.1|CK216509 FGAS028504 Triticum aestivum FGAS: L... 38 0.35
gb|CV776098.1|CV776098 FGAS070502 Triticum aestivum FGAS: L... 38 0.35
gb|DR738030.1|DR738030 FGAS083247 Triticum aestivum FGAS: L... 38 0.35
gb|DR739360.1|DR739360 FGAS084577 Triticum aestivum FGAS: L... 38 0.35
>gb|BJ259682.1|BJ259682 BJ259682 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh21m21 5', mRNA sequence
Length = 656
Score = 89.7 bits (45), Expect = 1e-016
Identities = 155/195 (79%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||| || || |||||||| ||||||||||||| | || | ||| ||
Sbjct: 289 acacctcgctgccactaccgcagatgagcgcgtcgaagtcggttgggggaaccttccccg 230
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
||| || |||||||| |||||||||| |||||| || ||||||| |||||| ||||
Sbjct: 229 tctgtaggagctggagcgtctcggacagcggcatcgccgtcgacagcgcgaacccagaga 170
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
||||| ||| |||| ||| || ||||| ||||| || |||| ||||||||||| ||
Sbjct: 169 tcttggacaattgggtgtcagaccggaccgccctgaacacctcctggatcacctgcagca 110
Query: 181 tcttcttgctagcac 195
|||||||||| ||||
Sbjct: 109 tcttcttgctggcac 95
>gb|AF347067.1| Triticum aestivum sucrose-phosphate synthase 5 mRNA, partial cds
Length = 1999
Score = 89.7 bits (45), Expect = 1e-016
Identities = 155/195 (79%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||| || || |||||||| ||||||||||||| | || | ||| ||
Sbjct: 1100 acacctcgctgccactaccgcagatgagcgcgtcgaagtcggttgggggaaccttccccg 1041
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
||| || |||||||| |||||||||| |||||| || ||||||| |||||| ||||
Sbjct: 1040 tctgtaggagctggagcgtctcggacagcggcatcgccgtcgacagcgcgaacccagaga 981
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
||||| ||| |||| ||| || ||||| ||||| || |||| ||||||||||| ||
Sbjct: 980 tcttggacaattgggtgtcagaccggaccgccctgaacacctcctggatcacctgcagca 921
Query: 181 tcttcttgctagcac 195
|||||||||| ||||
Sbjct: 920 tcttcttgctggcac 906
>gb|BI479606.1|BI479606 WHE3455_H02_O03ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3455_H02_O03, mRNA sequence
Length = 479
Score = 79.8 bits (40), Expect = 1e-013
Identities = 150/190 (78%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||| ||||| || || |||||||| ||||| ||||||| | || | ||| || |
Sbjct: 264 acacctcactgccactaccgcagatgagtgcgtcaaagtcggttgggggaaccttcccca 205
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||| |||||||| |||||||||| |||||| || ||||||| |||||| ||||
Sbjct: 204 tctgcaggagctggagcgtctcggacagcggcatcgccgtcgacagcgcgaacccagaga 145
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
||||| ||| |||| ||| || |||| ||||| || |||| ||||||||||| ||
Sbjct: 144 tcttggacaattgggtgtcggaccggatcgccctgaacacctcctggatcacctgcaaca 85
Query: 181 tcttcttgct 190
||||||||||
Sbjct: 84 tcttcttgct 75
>gb|BE500424.1|BE500424 WHE0987-0990_O07_O07ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0987-0990_O07_O07, mRNA
sequence
Length = 539
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcgg 42
||||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 118 acacctcgctgccactgccgcagatgagcgcatcgaagtcgg 77
>gb|BG263365.1|BG263365 WHE2341_B06_C11ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2341_B06_C11, mRNA sequence
Length = 440
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcgg 42
||||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 50 acacctcgctgccactgccgcagatgagcgcatcgaagtcgg 9
>gb|AF347068.1| Triticum aestivum sucrose-phosphate synthase 6 mRNA, partial cds
Length = 1030
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcgg 42
||||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 133 acacctcgctgccactgccgcagatgagcgcatcgaagtcgg 92
>gb|BJ256105.1|BJ256105 BJ256105 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh3o22 5', mRNA sequence
Length = 605
Score = 40.1 bits (20), Expect = 0.088
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 168 atcacctgcancatcttcttgct 190
|||||||||| ||||||||||||
Sbjct: 562 atcacctgcaacatcttcttgct 540
>gb|BE492579.1|BE492579 WHE0554_F01_F01ZE Triticum monococcum vegetative apex cDNA
library Triticum monococcum cDNA clone WHE0554_F01_F01,
mRNA sequence
Length = 325
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 ctcgctgccgctgccacag 23
|||||||||||||||||||
Sbjct: 38 ctcgctgccgctgccacag 56
>gb|CA699220.1|CA699220 wlk8.pk0016.d5 wlk8 Triticum aestivum cDNA clone wlk8.pk0016.d5 5'
end, mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 ctcgctgccgctgccacag 23
|||||||||||||||||||
Sbjct: 283 ctcgctgccgctgccacag 301
>gb|CK204194.1|CK204194 FGAS012729 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 840
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 ctcgctgccgctgccacag 23
|||||||||||||||||||
Sbjct: 420 ctcgctgccgctgccacag 438
>gb|CK216509.1|CK216509 FGAS028504 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1082
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5 ctcgctgccgctgccacag 23
|||||||||||||||||||
Sbjct: 392 ctcgctgccgctgccacag 374
>gb|CV776098.1|CV776098 FGAS070502 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 854
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 ctcgctgccgctgccacag 23
|||||||||||||||||||
Sbjct: 474 ctcgctgccgctgccacag 492
>gb|DR738030.1|DR738030 FGAS083247 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1101
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 ctcgctgccgctgccacag 23
|||||||||||||||||||
Sbjct: 399 ctcgctgccgctgccacag 417
>gb|DR739360.1|DR739360 FGAS084577 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1101
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 ctcgctgccgctgccacag 23
|||||||||||||||||||
Sbjct: 380 ctcgctgccgctgccacag 398
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,148
Number of Sequences: 636343
Number of extensions: 43148
Number of successful extensions: 11757
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11739
Number of HSP's gapped (non-prelim): 18
length of query: 318
length of database: 367,240,239
effective HSP length: 19
effective length of query: 299
effective length of database: 355,149,722
effective search space: 106189766878
effective search space used: 106189766878
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)