BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAR2a06.yg.3.1
         (612 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU099262.1|BU099262  WHE3305_E01_I01ZS Chinese Spring whe...    38   0.69 
gb|DR739394.1|DR739394  FGAS084611 Triticum aestivum FGAS: L...    36   2.7  

>gb|BU099262.1|BU099262 WHE3305_E01_I01ZS Chinese Spring wheat drought stressed root cDNA
           library Triticum aestivum cDNA clone WHE3305_E01_I01,
           mRNA sequence
          Length = 663

 Score = 38.2 bits (19), Expect = 0.69
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 110 aagtcagatcctcgctgga 128
           |||||||||||||||||||
Sbjct: 527 aagtcagatcctcgctgga 545



>gb|DR739394.1|DR739394 FGAS084611 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
            aestivum cDNA, mRNA sequence
          Length = 1128

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 3    gcatttcaggacccatgg 20
            ||||||||||||||||||
Sbjct: 1048 gcatttcaggacccatgg 1031



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  May 2, 2006  3:43 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,289
Number of Sequences: 636343
Number of extensions: 98289
Number of successful extensions: 24493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24490
Number of HSP's gapped (non-prelim): 3
length of query: 612
length of database: 367,240,239
effective HSP length: 19
effective length of query: 593
effective length of database: 355,149,722
effective search space: 210603785146
effective search space used: 210603785146
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)