BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR1e04.yg.2.1
(405 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ277445.1|BJ277445 BJ277445 Y. Ogihara unpublished cDNA... 204 3e-051
gb|CV775699.1|CV775699 FGAS070103 Triticum aestivum FGAS: L... 174 3e-042
gb|BQ753073.1|BQ753073 WHE4122_F11_K22ZS Wheat salt-stresse... 167 7e-040
gb|CA622381.1|CA622381 wl1n.pk0091.e3 wl1n Triticum aestivu... 107 6e-022
gb|CK200177.1|CK200177 FGAS008684 Triticum aestivum FGAS: L... 92 3e-017
gb|CA603455.1|CA603455 wr1.pk0024.b3 wr1 Triticum aestivum ... 86 2e-015
gb|CA606529.1|CA606529 wr1.pk0071.g7 wr1 Triticum aestivum ... 84 8e-015
gb|CD491640.1|CD491640 WHE2851_E09_I17ZT CS wheat unstresse... 74 8e-012
gb|CA620836.1|CA620836 wl1n.pk0069.g6 wl1n Triticum aestivu... 70 1e-010
gb|BE443384.1|BE443384 WHE1104_G08_N16ZS Wheat etiolated se... 68 5e-010
gb|BE445607.1|BE445607 WHE1451_B11_C21ZS Wheat etiolated se... 68 5e-010
gb|CD453012.1|CD453012 WHE1451_B11_C21ZT CS wheat etiolated... 68 5e-010
gb|CK193650.1|CK193650 FGAS002066 Triticum aestivum FGAS: L... 68 5e-010
gb|BF201692.1|BF201692 WHE1774_E05_J10ZS Wheat pre-anthesis... 54 8e-006
gb|BE430514.1|BE430514 SUN003.F12R991208 ITEC SUN Wheat cDN... 52 3e-005
gb|BJ281253.1|BJ281253 BJ281253 Y. Ogihara unpublished cDNA... 52 3e-005
gb|BJ286316.1|BJ286316 BJ286316 Y. Ogihara unpublished cDNA... 52 3e-005
gb|CD909805.1|CD909805 G468.113J06R010929 G468 Triticum aes... 52 3e-005
gb|CK193643.1|CK193643 FGAS002057 Triticum aestivum FGAS: L... 52 3e-005
gb|CD373848.1|CD373848 WHE2607_A07_B13ZT Sumai3 Wheat Fusar... 50 1e-004
gb|CA613946.1|CA613946 wr1.pk182.f9 wr1 Triticum aestivum c... 46 0.002
gb|CA614878.1|CA614878 wr1.pk183.d3 wr1 Triticum aestivum c... 46 0.002
gb|CA608059.1|CA608059 wr1.pk0086.b12 wr1 Triticum aestivum... 44 0.007
gb|CA612613.1|CA612613 wr1.pk0137.d7 wr1 Triticum aestivum ... 44 0.007
gb|CD868080.1|CD868080 AZO2.107P20R010515 AZO2 Triticum aes... 44 0.007
gb|CK199656.1|CK199656 FGAS008160 Triticum aestivum FGAS: L... 44 0.007
gb|BF201817.1|BF201817 WHE1759-1762_B09_B09ZS Wheat pre-ant... 42 0.029
gb|BJ253690.1|BJ253690 BJ253690 Y. Ogihara unpublished cDNA... 42 0.029
gb|AL825905.1|AL825905 AL825905 p:234 Triticum aestivum cDN... 42 0.029
gb|BG905538.1|BG905538 TaLr1140E03R TaLr1 Triticum aestivum... 40 0.11
gb|BJ289468.1|BJ289468 BJ289468 Y. Ogihara unpublished cDNA... 40 0.11
gb|BJ295794.1|BJ295794 BJ295794 Y. Ogihara unpublished cDNA... 40 0.11
gb|BQ294620.1|BQ294620 WHE2851_E09_I17ZS Wheat unstressed r... 40 0.11
gb|AL824971.1|AL824971 AL824971 p:234 Triticum aestivum cDN... 40 0.11
gb|CV772231.1|CV772231 FGAS066624 Triticum aestivum FGAS: L... 40 0.11
gb|CV776169.1|CV776169 FGAS070573 Triticum aestivum FGAS: L... 40 0.11
gb|BG314263.1|BG314263 WHE2461_C09_F17ZS Triticum monococcu... 38 0.45
gb|BG906020.1|BG906020 TaLr1144C10F TaLr1 Triticum aestivum... 38 0.45
gb|CA594002.1|CA594002 wpa1c.pk004.m15 wpa1c Triticum aesti... 38 0.45
gb|CA625829.1|CA625829 wl1n.pk0134.d9 wl1n Triticum aestivu... 38 0.45
gb|CD921802.1|CD921802 G750.100A23F010423 G750 Triticum aes... 38 0.45
gb|CD928859.1|CD928859 GR45.106D05F010319 GR45 Triticum aes... 38 0.45
gb|AJ610434.1|AJ610434 AJ610434 Triticum turgidum subsp. du... 38 0.45
gb|CV776469.1|CV776469 FGAS070873 Triticum aestivum FGAS: L... 38 0.45
gb|CV778139.1|CV778139 FGAS072547 Triticum aestivum FGAS: L... 38 0.45
>gb|BJ277445.1|BJ277445 BJ277445 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr11i06 5', mRNA sequence
Length = 394
Score = 204 bits (103), Expect = 3e-051
Identities = 210/248 (84%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||| ||| ||||||||||||| ||||||||| |||||||||||||||
Sbjct: 55 aaccaccctatccacacccatggctacgacttcttcatcctcgctgagggcttcggcaac 114
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| | |||||||| | |||||| |||||||||| || ||||||||||||
Sbjct: 115 ttcgatgccgctaccgacaccgcaaagttcaacctggacgacccaccaatgaggaacacg 174
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||| ||||| || || ||||| |||||||| ||||| || || || |||||||
Sbjct: 175 gtgggcgtcccggtgaatgggtgggctgtcatccggttcgtcgccgacaaccccggggtg 234
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 235 tggctgatgcactgccatctggatgtgcacatcacctggggcctcgccatggccttcctg 294
Query: 241 gtggagga 248
|| |||||
Sbjct: 295 gtcgagga 302
>gb|CV775699.1|CV775699 FGAS070103 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 818
Score = 174 bits (88), Expect = 3e-042
Identities = 232/281 (82%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaccatcccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 474
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
| ||||||| |||| |||| | |||||| | || |||| || |||||||||
Sbjct: 475 tacgacgccgagaaggacgccgcgaagttcaacctcgagaacccaccgcagaggaacacc 534
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatccc-ggggn 179
|||| |||||||| |||||||||||||||||||| ||| || || || ||| ||||
Sbjct: 535 gtggcggtgccggtgaacggctgggcggtcatccggttccgcgccgacaaccccgggggt 594
Query: 180 nnngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcct 239
||||||||| ||||| || |||||||||||||||||||| || || |||||||| ||
Sbjct: 595 ttggctcatgcattgccatctcgacgtgcacatcacctggggcctggcaatggcgtttct 654
Query: 240 ggtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|||||||||||| || ||| | ||||||||||||||||
Sbjct: 655 ggtggaggacgggtatggcgagctacagtcactggaggcgc 695
>gb|BQ753073.1|BQ753073 WHE4122_F11_K22ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4122_F11_K22, mRNA sequence
Length = 660
Score = 167 bits (84), Expect = 7e-040
Identities = 231/281 (82%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 292
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
| ||||||| |||| |||| | |||||| | || |||| || |||||||||
Sbjct: 293 tacgacgccgagaaggacgccgcgaagttcaacctcgagaacccaccgcagaggaacacc 352
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatccc-ggggn 179
|||| |||||||| |||||||||||||||||||| ||| || || || ||| ||||
Sbjct: 353 gtggcggtgccggtgaacggctgggcggtcatccggttccgcgccgacaagcccgggggt 412
Query: 180 nnngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcct 239
||||||||| ||||| || || ||||||||||||||||| || || |||||||| ||
Sbjct: 413 gtggctcatgcattgccatctcgatgtgcacatcacctggggcctggcaatggcgtttct 472
Query: 240 ggtggaggacggcgtcggggagatgcagtcactggaggcgc 280
||| |||||||| || ||| | ||||||||||||||||
Sbjct: 473 ggtcgaggacgggtatggcgagctacagtcactggaggcgc 513
>gb|CA622381.1|CA622381 wl1n.pk0091.e3 wl1n Triticum aestivum cDNA clone wl1n.pk0091.e3 5'
end, mRNA sequence
Length = 486
Score = 107 bits (54), Expect = 6e-022
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 245 aaccaccccatccacatccacggctacgatttcttcatcctcgccgagggcttcggcaac 304
Query: 61 ttcgac 66
||||||
Sbjct: 305 ttcgac 310
>gb|CK200177.1|CK200177 FGAS008684 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 875
Score = 91.7 bits (46), Expect = 3e-017
Identities = 138/170 (81%)
Strand = Plus / Minus
Query: 111 gaggaacacggtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataa 170
||||||||| |||| |||||||| |||||||||||||||||||| ||| || || ||
Sbjct: 550 gaggaacaccgtggcggtgccggtgaacggctgggcggtcatccggttccgcgccgacaa 491
Query: 171 tcccggggnnnngctcatgcactgccacctggacgtgcacatcacctggggtctcgccat 230
|| |||| ||||||||| ||||| || || ||||||||||||||||| || || ||
Sbjct: 490 cccgggggtgtggctcatgcattgccatctcgatgtgcacatcacctggggcctggcaat 431
Query: 231 ggcgttcctggtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|||||| ||||| |||||||| || ||| | ||||||||||||||||
Sbjct: 430 ggcgtttctggtcgaggacgggtatggcgagctacagtcactggaggcgc 381
>gb|CA603455.1|CA603455 wr1.pk0024.b3 wr1 Triticum aestivum cDNA clone wr1.pk0024.b3 5'
end, mRNA sequence
Length = 279
Score = 85.7 bits (43), Expect = 2e-015
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 113 ggaacacggtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatc 172
||||||| |||| ||||| || |||||||||||||||||||| ||| || || || |
Sbjct: 69 ggaacaccgtggcggtgcccgtgaacggctgggcggtcatccggttccgcgccgacaacc 128
Query: 173 ccggggnnnngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
| |||| ||||||||| ||||| || |||||||||||||||||||| || || ||||
Sbjct: 129 cgggggtgtggctcatgcattgccatctcgacgtgcacatcacctggggcctggcaatgg 188
Query: 233 cgttcctggtggaggacgg 251
|||| ||||| ||||||||
Sbjct: 189 cgtttctggtcgaggacgg 207
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 cgagggcttcggcaacttcgacgcc 69
||||||||||||||||| |||||||
Sbjct: 1 cgagggcttcggcaactacgacgcc 25
>gb|CA606529.1|CA606529 wr1.pk0071.g7 wr1 Triticum aestivum cDNA clone wr1.pk0071.g7 5'
end, mRNA sequence
Length = 357
Score = 83.8 bits (42), Expect = 8e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||||||| ||||| || |||||||||||||||||||| || || |||||||| |||||
Sbjct: 43 gctcatgcattgccatctcgacgtgcacatcacctggggcctggcaatggcgtttctggt 102
Query: 243 ggaggacggcgtcggggagatgcagtcactggaggcgc 280
||||||||| || ||| | ||||||||||||||||
Sbjct: 103 ggaggacgggtatggcgagctacagtcactggaggcgc 140
>gb|CD491640.1|CD491640 WHE2851_E09_I17ZT CS wheat unstressed root tip cDNA library
Triticum aestivum cDNA clone WHE2851_E09_I17, mRNA
sequence
Length = 629
Score = 73.8 bits (37), Expect = 8e-012
Identities = 197/250 (78%), Gaps = 2/250 (0%)
Strand = Plus / Minus
Query: 4 caccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttc 63
|||||||| ||| ||||||||||| |||||||| | |||||| || |||||||||| |
Sbjct: 501 caccccatgcacatccacggctaccacttctacgtgctcgccaccgggttcggcaactac 442
Query: 64 gacgccnnngcgg-acaccgccagcttcaacatggacgacccgcccatgaggaacacggt 122
||| || |||| || | | ||| |||||||||| |||||||||| ||||||| |
Sbjct: 441 gac-ccgaggcgggacgcgggcaggttcaacatggttgacccgcccagccggaacaccat 383
Query: 123 gggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnnnn 182
|||||||| ||| ||||||||| ||| | |||||||||||||| || || ||||
Sbjct: 382 cggcgtgcccgtcggcggctgggccgtcgtgcgcttcgtggcggacaacccgggggtgtg 323
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||| ||||||||||| | |||| ||| || || | || |||||||||||| | |||||
Sbjct: 322 gctggtgcactgccacatcgacgcgcatctctccggcgggctcgccatggcgctgctggt 263
Query: 243 ggaggacggc 252
||||||||||
Sbjct: 262 ggaggacggc 253
>gb|CA620836.1|CA620836 wl1n.pk0069.g6 wl1n Triticum aestivum cDNA clone wl1n.pk0069.g6 5'
end, mRNA sequence
Length = 624
Score = 69.9 bits (35), Expect = 1e-010
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 4 caccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaact 61
|||||||||||| ||||||||||||| |||| |||||||||||| || ||||||||||
Sbjct: 247 caccccatccacatccacggctacgatttcttcatcctcgccgangg-ttcggcaact 303
>gb|BE443384.1|BE443384 WHE1104_G08_N16ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1104_G08_N16,
mRNA sequence
Length = 323
Score = 67.9 bits (34), Expect = 5e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||||||| ||||| || || ||||||||||||||||| || || |||||||| |||||
Sbjct: 8 gctcatgcattgccatctcgatgtgcacatcacctggggcctggcaatggcgtttctggt 67
Query: 243 ggaggacggcgtcggggagatgcagtcactggaggcgc 280
|||||||| || ||| | ||||||||||||||||
Sbjct: 68 cgaggacgggtatggcgagctacagtcactggaggcgc 105
>gb|BE445607.1|BE445607 WHE1451_B11_C21ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1451_B11_C21,
mRNA sequence
Length = 323
Score = 67.9 bits (34), Expect = 5e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||||||| ||||| || || ||||||||||||||||| || || |||||||| |||||
Sbjct: 8 gctcatgcattgccatctcgatgtgcacatcacctggggcctggcaatggcgtttctggt 67
Query: 243 ggaggacggcgtcggggagatgcagtcactggaggcgc 280
|||||||| || ||| | ||||||||||||||||
Sbjct: 68 cgaggacgggtatggcgagctacagtcactggaggcgc 105
>gb|CD453012.1|CD453012 WHE1451_B11_C21ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1451_B11_C21,
mRNA sequence
Length = 336
Score = 67.9 bits (34), Expect = 5e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||||||| ||||| || || ||||||||||||||||| || || |||||||| |||||
Sbjct: 315 gctcatgcattgccatctcgatgtgcacatcacctggggcctggcaatggcgtttctggt 256
Query: 243 ggaggacggcgtcggggagatgcagtcactggaggcgc 280
|||||||| || ||| | ||||||||||||||||
Sbjct: 255 cgaggacgggtatggcgagctacagtcactggaggcgc 218
>gb|CK193650.1|CK193650 FGAS002066 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 868
Score = 67.9 bits (34), Expect = 5e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||||||| ||||| || || ||||||||||| ||||| || || |||||||| |||||
Sbjct: 492 gctcatgcattgccatctcgaagtgcacatcacgtggggcctggcaatggcgtttctggt 433
Query: 243 ggaggacggcgtcggggagatgcagtcactggaggcgc 280
||||||||| || ||| | ||||||||||||||||
Sbjct: 432 ggaggacgggtatggcgagctacagtcactggaggcgc 395
>gb|BF201692.1|BF201692 WHE1774_E05_J10ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1774_E05_J10, mRNA sequence
Length = 429
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 185 tcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgt 235
|||||||||||||||||||||||||| | | |||||| || |||||||||
Sbjct: 373 tcatgcactgccacctggacgtgcacctgagctggggcctgtccatggcgt 423
Score = 42.1 bits (21), Expect = 0.029
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 13 cacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgacgcc 69
||||| ||||||||||||||| || || ||| | ||| |||||||||| |||||||
Sbjct: 201 cacctgcacggctacgacttccacgtcgtcggcacggggttcggcaactacgacgcc 257
>gb|BE430514.1|BE430514 SUN003.F12R991208 ITEC SUN Wheat cDNA Library Triticum aestivum
cDNA clone SUN003.F12, mRNA sequence
Length = 844
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|||| ||||||||||| | |||| ||| ||||| | || |||||||||||||| ||||
Sbjct: 288 gctcgtgcactgccacatcgacgcgcatctcaccggcgggctcgccatggcgttggtggt 229
Query: 243 ggaggacggc 252
||||||||||
Sbjct: 228 ggaggacggc 219
>gb|BJ281253.1|BJ281253 BJ281253 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr21d06 5', mRNA sequence
Length = 383
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|||| ||||||||||| | |||| ||| ||||| | || |||||||||||||| ||||
Sbjct: 168 gctcgtgcactgccacatcgacgcgcatctcaccggcgggctcgccatggcgttggtggt 227
Query: 243 ggaggacggc 252
||||||||||
Sbjct: 228 ggaggacggc 237
>gb|BJ286316.1|BJ286316 BJ286316 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr21d06 3', mRNA sequence
Length = 332
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|||| ||||||||||| | |||| ||| ||||| | || |||||||||||||| ||||
Sbjct: 168 gctcgtgcactgccacatcgacgcgcatctcaccggcgggctcgccatggcgttggtggt 109
Query: 243 ggaggacggc 252
||||||||||
Sbjct: 108 ggaggacggc 99
>gb|CD909805.1|CD909805 G468.113J06R010929 G468 Triticum aestivum cDNA clone G468113J06,
mRNA sequence
Length = 724
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|||| ||||||||||| | |||| ||| ||||| | || |||||||||||||| ||||
Sbjct: 285 gctcgtgcactgccacatcgacgcgcatctcaccggcgggctcgccatggcgttggtggt 226
Query: 243 ggaggacggc 252
||||||||||
Sbjct: 225 ggaggacggc 216
>gb|CK193643.1|CK193643 FGAS002057 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 874
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 183 gctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|||| ||||||||||| | |||| ||| ||||| | || |||||||||||||| ||||
Sbjct: 385 gctcgtgcactgccacatcgacgcgcatctcaccggcgggctcgccatggcgttggtggt 326
Query: 243 ggaggacggc 252
||||||||||
Sbjct: 325 ggaggacggc 316
>gb|CD373848.1|CD373848 WHE2607_A07_B13ZT Sumai3 Wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
WHE2607_A07_B13, mRNA sequence
Length = 694
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 5 accccatccacctccacggctacgacttctacatcctcgcc 45
||||||| |||||||| ||||||||||||| | ||||||||
Sbjct: 603 accccatgcacctccatggctacgacttcttcgtcctcgcc 563
>gb|CA613946.1|CA613946 wr1.pk182.f9 wr1 Triticum aestivum cDNA clone wr1.pk182.f9 5' end,
mRNA sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 185 tcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgt 235
|||||||||||||||||||||| ||| | | |||||| || |||||||||
Sbjct: 318 tcatgcactgccacctggacgtacacctgagctggggcctatccatggcgt 368
>gb|CA614878.1|CA614878 wr1.pk183.d3 wr1 Triticum aestivum cDNA clone wr1.pk183.d3 5' end,
mRNA sequence
Length = 481
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 185 tcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgt 235
|||||||||||||||||||||| ||| | | |||||| || |||||||||
Sbjct: 183 tcatgcactgccacctggacgtacacctgagctggggcctatccatggcgt 233
>gb|CA608059.1|CA608059 wr1.pk0086.b12 wr1 Triticum aestivum cDNA clone wr1.pk0086.b12 5'
end, mRNA sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 185 tcatgcactgccacctggacgt 206
||||||||||||||||||||||
Sbjct: 385 tcatgcactgccacctggacgt 406
>gb|CA612613.1|CA612613 wr1.pk0137.d7 wr1 Triticum aestivum cDNA clone wr1.pk0137.d7 5'
end, mRNA sequence
Length = 279
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 223 ctcgccatggcgttcctggtggaggacggc 252
|||||||||||||| ||||||||||||||
Sbjct: 22 ctcgccatggcgttggtggtggaggacggc 51
>gb|CD868080.1|CD868080 AZO2.107P20R010515 AZO2 Triticum aestivum cDNA clone AZO2107P20,
mRNA sequence
Length = 454
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 223 ctcgccatggcgttcctggtggaggacggc 252
|||||||||||||| ||||||||||||||
Sbjct: 224 ctcgccatggcgttggtggtggaggacggc 195
>gb|CK199656.1|CK199656 FGAS008160 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 839
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 223 ctcgccatggcgttcctggtggaggacggc 252
|||||||||||||| ||||||||||||||
Sbjct: 424 ctcgccatggcgttggtggtggaggacggc 395
>gb|BF201817.1|BF201817 WHE1759-1762_B09_B09ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE1759-1762_B09_B09, mRNA
sequence
Length = 466
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 185 tcatgcactgccacctggacgtgcacatcacctgggg 221
||||||| ||||||||||| |||||| ||| ||||||
Sbjct: 412 tcatgcattgccacctggaggtgcacgtcagctgggg 448
>gb|BJ253690.1|BJ253690 BJ253690 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2o13 3', mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 185 tcatgcactgccacctggacgtgcacatcacctgggg 221
||||||| ||||||||||| |||||| ||| ||||||
Sbjct: 455 tcatgcattgccacctggaggtgcacgtcagctgggg 419
>gb|AL825905.1|AL825905 AL825905 p:234 Triticum aestivum cDNA clone
H12_p234_plate_17_run_2, mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 atccacctccacggctacgacttct 34
|||||||||||||||| ||||||||
Sbjct: 116 atccacctccacggcttcgacttct 140
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 243 ggctgggccgtcatccgcttcgt 265
>gb|BG905538.1|BG905538 TaLr1140E03R TaLr1 Triticum aestivum cDNA clone TaLr1140E03 5',
mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 3 ccaccccatccacctccacggctacgacttct 34
|||||| |||||||||||||||| | ||||||
Sbjct: 561 ccacccgatccacctccacggcttcaacttct 530
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 428 ggctgggccgtcatccgcttcgt 406
>gb|BJ289468.1|BJ289468 BJ289468 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl5h22 5', mRNA sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttct 34
|||||| |||||||||||||||| | ||||||
Sbjct: 349 ccacccgatccacctccacggcttcaacttct 380
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 482 ggctgggccgtcatccgcttcgt 504
>gb|BJ295794.1|BJ295794 BJ295794 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl5h22 3', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 3 ccaccccatccacctccacggctacgacttct 34
|||||| |||||||||||||||| | ||||||
Sbjct: 524 ccacccgatccacctccacggcttcaacttct 493
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 391 ggctgggccgtcatccgcttcgt 369
>gb|BQ294620.1|BQ294620 WHE2851_E09_I17ZS Wheat unstressed root tip cDNA library Triticum
aestivum cDNA clone WHE2851_E09_I17, mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 4 caccccatccacctccacggctacgacttcta 35
|||||||| ||| ||||||||||| |||||||
Sbjct: 560 caccccatgcacatccacggctaccacttcta 591
>gb|AL824971.1|AL824971 AL824971 p:234 Triticum aestivum cDNA clone
C10_p234_plate_11_run_2, mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttct 34
|||||| |||||||||||||||| | ||||||
Sbjct: 509 ccacccgatccacctccacggcttcaacttct 540
>gb|CV772231.1|CV772231 FGAS066624 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 871
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttct 34
|||||| |||||||||||||||| | ||||||
Sbjct: 548 ccacccgatccacctccacggcttcaacttct 579
>gb|CV776169.1|CV776169 FGAS070573 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 836
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttct 34
|||||| |||||||||||||||| | ||||||
Sbjct: 261 ccacccgatccacctccacggcttcaacttct 292
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 394 ggctgggccgtcatccgcttcgt 416
>gb|BG314263.1|BG314263 WHE2461_C09_F17ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2461_C09_F17,
mRNA sequence
Length = 173
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4 caccccatccacctccacg 22
|||||||||||||||||||
Sbjct: 159 caccccatccacctccacg 141
>gb|BG906020.1|BG906020 TaLr1144C10F TaLr1 Triticum aestivum cDNA clone TaLr1144C10 3',
mRNA sequence
Length = 526
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 417 ggctgggccgtcatccgcttcgt 395
>gb|CA594002.1|CA594002 wpa1c.pk004.m15 wpa1c Triticum aestivum cDNA clone wpa1c.pk004.m15
5' end, mRNA sequence
Length = 542
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4 caccccatccacctccacg 22
|||||||||||||||||||
Sbjct: 173 caccccatccacctccacg 155
>gb|CA625829.1|CA625829 wl1n.pk0134.d9 wl1n Triticum aestivum cDNA clone wl1n.pk0134.d9 5'
end, mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 126 ggctgggccgtcatccgcttcgt 148
>gb|CD921802.1|CD921802 G750.100A23F010423 G750 Triticum aestivum cDNA clone G750100A23,
mRNA sequence
Length = 419
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4 caccccatccacctccacg 22
|||||||||||||||||||
Sbjct: 174 caccccatccacctccacg 156
>gb|CD928859.1|CD928859 GR45.106D05F010319 GR45 Triticum aestivum cDNA clone GR45106D05,
mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4 caccccatccacctccacg 22
|||||||||||||||||||
Sbjct: 184 caccccatccacctccacg 166
>gb|AJ610434.1|AJ610434 AJ610434 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 02170R, mRNA
sequence
Length = 265
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 139 ggctgggcggtcatccgcttcgt 161
|||||||| ||||||||||||||
Sbjct: 147 ggctgggccgtcatccgcttcgt 169
>gb|CV776469.1|CV776469 FGAS070873 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 866
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4 caccccatccacctccacg 22
|||||||||||||||||||
Sbjct: 284 caccccatccacctccacg 266
>gb|CV778139.1|CV778139 FGAS072547 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 837
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4 caccccatccacctccacg 22
|||||||||||||||||||
Sbjct: 289 caccccatccacctccacg 271
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,991
Number of Sequences: 636343
Number of extensions: 72991
Number of successful extensions: 23446
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23348
Number of HSP's gapped (non-prelim): 89
length of query: 405
length of database: 367,240,239
effective HSP length: 19
effective length of query: 386
effective length of database: 355,149,722
effective search space: 137087792692
effective search space used: 137087792692
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)