BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM10b11.yg.2.1
(554 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK193367.1|CK193367 FGAS001781 Triticum aestivum FGAS: L... 111 5e-023
gb|BQ838426.1|BQ838426 WHE2910_C10_E20ZS Wheat aluminum-str... 98 8e-019
gb|CK207955.1|CK207955 FGAS019629 Triticum aestivum FGAS: L... 62 4e-008
gb|BE430032.1|BE430032 TAS006.D01R990622 ITEC TAS Wheat cDN... 54 1e-005
gb|DR733717.1|DR733717 FGAS079475 Triticum aestivum FGAS: L... 54 1e-005
gb|BF485060.1|BF485060 WHE1792_H10_O20ZS Wheat pre-anthesis... 50 2e-004
gb|BG907456.1|BG907456 TaLr1160B10R TaLr1 Triticum aestivum... 50 2e-004
gb|AL820007.1|AL820007 AL820007 N:130 Triticum aestivum cDN... 50 2e-004
gb|CA731107.1|CA731107 wip1c.pk007.m1 wip1c Triticum aestiv... 50 2e-004
gb|BG263447.1|BG263447 WHE2342_B04_C08ZS Wheat pre-anthesis... 46 0.003
gb|BJ244035.1|BJ244035 BJ244035 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ280189.1|BJ280189 BJ280189 Y. Ogihara unpublished cDNA... 46 0.003
gb|CD876679.1|CD876679 AZO3.110I14F011010 AZO3 Triticum aes... 46 0.003
gb|CV760567.1|CV760567 FGAS054953 Triticum aestivum FGAS: L... 46 0.003
gb|CN008278.1|CN008278 WHE2639_D04_H07ZE Wheat Fusarium gra... 42 0.040
gb|BQ483488.1|BQ483488 WHE3509_B09_C17ZS Wheat unstressed r... 40 0.16
gb|CK208726.1|CK208726 FGAS020442 Triticum aestivum FGAS: L... 40 0.16
>gb|CK193367.1|CK193367 FGAS001781 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 836
Score = 111 bits (56), Expect = 5e-023
Identities = 206/256 (80%)
Strand = Plus / Plus
Query: 251 ggaacgctcgatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagca 310
|||||| | |||||| ||| |||| |||||| ||| ||||||| || ||||||||||||
Sbjct: 258 ggaacggttgatatctacagacagcctgctctcaagcagagcactggcaactggagagca 317
Query: 311 tgcttcatgattctgggtaccgagttcgccgaatgcctggcattttacgcgaccgcaaag 370
|||||| | ||||| || |||| ||| ||||||| || || | ||| ||| |||
Sbjct: 318 tgcttcttcattctaggcgccgaattcagcgaatgcatgtgcttcttcgccgtcgccaag 377
Query: 371 aacctggtcacctacctcacggctgagcttggtgagaccaacatcgatgccgcgacgaac 430
||| ||||||||||||| ||| | | ||| ||||| |||| |||| || |||| ||||
Sbjct: 378 aacttggtcacctaccttacgacggtgctccatgagagcaacgtcgacgctgcgaggaac 437
Query: 431 gtgtccacctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgac 490
||||| || ||||| |||||||||| |||||||||| ||||| | |||||||||||||||
Sbjct: 438 gtgtcgacttggatcggcagctgcttcctcacgccggtcatcggagccttcttggccgac 497
Query: 491 acgtactggggaagat 506
| |||||||||||||
Sbjct: 498 tcttactggggaagat 513
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactg 196
|||||||||||||||||||||
Sbjct: 177 gcagatgaggagaggccactg 197
>gb|BQ838426.1|BQ838426 WHE2910_C10_E20ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2910_C10_E20, mRNA
sequence
Length = 373
Score = 97.6 bits (49), Expect = 8e-019
Identities = 202/253 (79%)
Strand = Plus / Plus
Query: 251 ggaacgctcgatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagca 310
|||||| | |||||| ||| |||| |||||| ||| ||||||| || ||||||||||||
Sbjct: 121 ggaacggttgatatctacagacagcctgctctcaagcagagcactggcaactggagagca 180
Query: 311 tgcttcatgattctgggtaccgagttcgccgaatgcctggcattttacgcgaccgcaaag 370
|||||| | ||||| || |||| ||| ||||||| || || | ||| ||| |||
Sbjct: 181 tgcttcttcattctaggcgccgaattcagcgaatgcatgtgcttcttcgccgtcgccaag 240
Query: 371 aacctggtcacctacctcacggctgagcttggtgagaccaacatcgatgccgcgacgaac 430
||| ||||||||||||| ||| | | ||| ||||| |||| |||| || |||| ||||
Sbjct: 241 aacttggtcacctaccttacgacggtgctccatgagagcaacgtcgacgctgcgaggaac 300
Query: 431 gtgtccacctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgac 490
||||| || ||||| |||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 301 gtgtcgacttggatcggcagctgcttcctcacgccgggcatcggagccttcttggccgac 360
Query: 491 acgtactggggaa 503
| ||||||||||
Sbjct: 361 tcttactggggaa 373
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactg 196
|||||||||||||||||||||
Sbjct: 40 gcagatgaggagaggccactg 60
>gb|CK207955.1|CK207955 FGAS019629 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1095
Score = 61.9 bits (31), Expect = 4e-008
Identities = 100/123 (81%)
Strand = Plus / Plus
Query: 368 aagaacctggtcacctacctcacggctgagcttggtgagaccaacatcgatgccgcgacg 427
|||||||||||||||||||||||| | | ||| |||| |||| |||| ||||||| |
Sbjct: 379 aagaacctggtcacctacctcacgacggtgctccacgagagcaacgtcgacgccgcgagg 438
Query: 428 aacgtgtccacctggattggcagctgctacctcacgccgctcatcagcgccttcttggcc 487
|| || ||||||||| | |||| ||||| | |||||||| || || | |||||| |||||
Sbjct: 439 aatgtatccacctgggtcggcacctgcttcatcacgccggtcctcggagccttcctggcc 498
Query: 488 gac 490
|||
Sbjct: 499 gac 501
>gb|BE430032.1|BE430032 TAS006.D01R990622 ITEC TAS Wheat cDNA Library Triticum aestivum
cDNA clone TAS006.D01, mRNA sequence
Length = 511
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 479 ttcttggccgacacgtactggggaagatacaagac 513
|||||||| |||||||| |||||||||||||||||
Sbjct: 385 ttcttggcagacacgtattggggaagatacaagac 419
>gb|DR733717.1|DR733717 FGAS079475 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 816
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 446 ggcagctgctacctcacgccgctcatcagcgccttcttggccgacac 492
|||| ||||||| |||||||||||||| |||||||| | ||||||||
Sbjct: 559 ggcacctgctacatcacgccgctcatcggcgccttcctcgccgacac 605
>gb|BF485060.1|BF485060 WHE1792_H10_O20ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1792_H10_O20, mRNA sequence
Length = 466
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 446 ggcagctgctacctcacgccgctcatcagcgccttcttggccgac 490
|||| ||||||| |||||||||||||| |||||||| | ||||||
Sbjct: 372 ggcacctgctacatcacgccgctcatcggcgccttcctcgccgac 416
>gb|BG907456.1|BG907456 TaLr1160B10R TaLr1 Triticum aestivum cDNA clone TaLr1160B10 5',
mRNA sequence
Length = 563
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 446 ggcagctgctacctcacgccgctcatcagcgccttcttggccgac 490
|||| ||||||| |||||||||||||| |||||||| | ||||||
Sbjct: 465 ggcacctgctacatcacgccgctcatcggcgccttcctcgccgac 509
>gb|AL820007.1|AL820007 AL820007 N:130 Triticum aestivum cDNA clone E09_N130_plate_56, mRNA
sequence
Length = 680
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 446 ggcagctgctacctcacgccgctcatcagcgccttcttggccgac 490
|||| ||||||| |||||||||||||| |||||||| | ||||||
Sbjct: 396 ggcacctgctacatcacgccgctcatcggcgccttcctcgccgac 440
>gb|CA731107.1|CA731107 wip1c.pk007.m1 wip1c Triticum aestivum cDNA clone wip1c.pk007.m1 5'
end, mRNA sequence
Length = 614
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 446 ggcagctgctacctcacgccgctcatcagcgccttcttggccgac 490
|||| ||||||| |||||||||||||| |||||||| | ||||||
Sbjct: 394 ggcacctgctacatcacgccgctcatcggcgccttcctcgccgac 438
>gb|BG263447.1|BG263447 WHE2342_B04_C08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2342_B04_C08, mRNA sequence
Length = 560
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 479 ttcttggccgacacgtactggggaagatacaagac 513
|||||||| ||||| || |||||||||||||||||
Sbjct: 320 ttcttggcagacacatattggggaagatacaagac 354
>gb|BJ244035.1|BJ244035 BJ244035 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13o09 5', mRNA sequence
Length = 585
Score = 46.1 bits (23), Expect = 0.003
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 459 tcacgccgctcatcagcgccttcttggccgacacgtactggggaagatacaagac 513
|||||||||| || | ||||||||||| |||||||| ||||| || ||||||||
Sbjct: 53 tcacgccgcttattggagccttcttggcagacacgtattgggggaggtacaagac 107
>gb|BJ280189.1|BJ280189 BJ280189 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr6p08 5', mRNA sequence
Length = 199
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 278 gctctgaagaagagcaccgggaactggagagcatgcttc 316
||||| ||| ||||||| || ||||||||||||||||||
Sbjct: 79 gctctcaagcagagcactggcaactggagagcatgcttc 117
>gb|CD876679.1|CD876679 AZO3.110I14F011010 AZO3 Triticum aestivum cDNA clone AZO3110I14,
mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 479 ttcttggccgacacgtactggggaagatacaagac 513
|||||||| ||||| || |||||||||||||||||
Sbjct: 389 ttcttggcagacacatattggggaagatacaagac 423
>gb|CV760567.1|CV760567 FGAS054953 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 827
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 290 agcaccgggaactggagagcatgcttc 316
||||| |||||||||||||||||||||
Sbjct: 352 agcacagggaactggagagcatgcttc 378
>gb|CN008278.1|CN008278 WHE2639_D04_H07ZE Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2639_D04_H07,
mRNA sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 366 caaagaacctggtcacctacctcac 390
|||||||| ||||||||||||||||
Sbjct: 260 caaagaacttggtcacctacctcac 284
>gb|BQ483488.1|BQ483488 WHE3509_B09_C17ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3509_B09_C17, mRNA sequence
Length = 774
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 290 agcaccgggaactggagagcatgc 313
|||||||| |||||||||||||||
Sbjct: 734 agcaccggcaactggagagcatgc 757
>gb|CK208726.1|CK208726 FGAS020442 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1061
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 459 tcacgccgctcatcagcgccttcttggccgac 490
|||||||||||||| |||||||| | ||||||
Sbjct: 32 tcacgccgctcatcggcgccttcctcgccgac 63
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,353
Number of Sequences: 636343
Number of extensions: 122353
Number of successful extensions: 33794
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33750
Number of HSP's gapped (non-prelim): 42
length of query: 554
length of database: 367,240,239
effective HSP length: 19
effective length of query: 535
effective length of database: 355,149,722
effective search space: 190005101270
effective search space used: 190005101270
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)