BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.3
(732 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM137049.1|BM137049 WHE2627_F11_L20ZS Wheat Fusarium gra... 111 7e-023
gb|BQ901325.1|BQ901325 Ta02_17h01_R Ta02_AAFC_ECORC_Fusariu... 70 2e-010
gb|BQ752685.1|BQ752685 WHE4117_H12_O23ZS Wheat salt-stresse... 42 0.053
gb|DQ157841.1| Triticum turgidum strain Langdon chromosome ... 42 0.053
>gb|BM137049.1|BM137049 WHE2627_F11_L20ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2627_F11_L20,
mRNA sequence
Length = 421
Score = 111 bits (56), Expect = 7e-023
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 399 gaatggattggatcattcacctcgatactgatgagttgattcatccagctggtgcccgag 458
|||||||||||||||| || || ||||| || ||||| ||||||||||| |||||| | |
Sbjct: 302 gaatggattggatcatacatcttgataccgacgagttaattcatccagcgggtgccaggg 361
Query: 459 agtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggttatcttcc 518
||||||| || ||||| ||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 362 agtactctcttaggcggctgcttttggatgttcctgataatgttgacatggttatcttcc 421
>gb|BQ901325.1|BQ901325 Ta02_17h01_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_17h01, mRNA
sequence
Length = 486
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 477 tgcttttagatgttcctgacaacgttgacatggttatcttccccaattatg 527
||||||| ||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 16 tgcttttggatgttcctgataatgttgacatggttatcttccccaactatg 66
>gb|BQ752685.1|BQ752685 WHE4117_H12_O23ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4117_H12_O23, mRNA sequence
Length = 802
Score = 42.1 bits (21), Expect = 0.053
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 399 gaatggattggatcattcacctcgatactgatgagttgattcatc 443
|||||||||||||||| || || ||||| || ||||| |||||||
Sbjct: 758 gaatggattggatcatacatcttgataccgacgagttaattcatc 802
>gb|DQ157841.1| Triticum turgidum strain Langdon chromosome 1 clone BAC 1219A5 map 1BS,
WORKING DRAFT SEQUENCE, 16 unordered pieces
Length = 105039
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 500 gttgacatggttatcttccccaattatgt 528
|||||||||||||||||||| || |||||
Sbjct: 50282 gttgacatggttatcttccctaactatgt 50254
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,931
Number of Sequences: 636343
Number of extensions: 79931
Number of successful extensions: 19863
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19852
Number of HSP's gapped (non-prelim): 11
length of query: 732
length of database: 367,240,239
effective HSP length: 19
effective length of query: 713
effective length of database: 355,149,722
effective search space: 253221751786
effective search space used: 253221751786
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)