BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ752685.1|BQ752685 WHE4117_H12_O23ZS Wheat salt-stresse... 184 3e-045
gb|CV759624.1|CV759624 FGAS054008 Triticum aestivum FGAS: L... 172 1e-041
gb|BM137049.1|BM137049 WHE2627_F11_L20ZS Wheat Fusarium gra... 141 4e-032
gb|BQ239666.1|BQ239666 TaE05028C01R TaE05 Triticum aestivum... 129 1e-028
gb|BE500437.1|BE500437 WHE0987-0990_M05_M05ZS Wheat pre-ant... 48 4e-004
gb|CA743809.1|CA743809 wri1s.pk005.a4 wri1s Triticum aestiv... 34 6.0
>gb|BQ752685.1|BQ752685 WHE4117_H12_O23ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4117_H12_O23, mRNA sequence
Length = 802
Score = 184 bits (93), Expect = 3e-045
Identities = 135/150 (90%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||
Sbjct: 437 agatctgtatcacgggaagcacatctgctagcttacaccaaattcttccatggttgtatt 496
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
||||||| ||||||||||||||||| || ||||||| ||||||||||||||||| || |
Sbjct: 497 atcacaaggtcattggtgtttcacactttattctatttgttgaaggagaggctgctaaac 556
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| || |||||||| ||||||||||
Sbjct: 557 cagctgttacttctgttctcgaatctattc 586
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 151 agccgcatttggaatgagacttg 173
||||||||||||||||| |||||
Sbjct: 640 agccgcatttggaatgaaacttg 662
Score = 34.2 bits (17), Expect = 6.0
Identities = 42/53 (79%)
Strand = Plus / Plus
Query: 232 aacatggaaatgnnnattattatgnnnagggatgctagaatggattnnatcat 284
|||||||||||| ||| ||||| ||||| ||| ||||||||| |||||
Sbjct: 721 aacatggaaatggctattgttatggcaagggaggctggaatggattggatcat 773
>gb|CV759624.1|CV759624 FGAS054008 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 826
Score = 172 bits (87), Expect = 1e-041
Identities = 132/148 (89%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||
Sbjct: 580 agatctgtataacgggaagcacatctgctagcttacaccaaattcttccatggttgtatt 639
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
||||||| ||||||||||||||||| || ||||||| ||||||||||||||||| || |
Sbjct: 640 atcacaaggtcattggtgtttcacactttattctatttgttgaaggagaggctgctaaac 699
Query: 121 cagctnnnacctctgttcttgaatctat 148
||||| || |||||||| ||||||||
Sbjct: 700 cagctgttacttctgttctcgaatctat 727
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 151 agccgcatttggaatga 167
|||||||||||||||||
Sbjct: 783 agccgcatttggaatga 799
>gb|BM137049.1|BM137049 WHE2627_F11_L20ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2627_F11_L20,
mRNA sequence
Length = 421
Score = 141 bits (71), Expect = 4e-032
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 21 acatctgctggcctacaccagattcttccatggttgtattatcacaatgtcattggtgtt 80
||||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 acatctgctagcttacaccaaattcttccatggttgtattatcacaaggtcattggtgtt 60
Query: 81 tcacatttctttctattagttgaaggagaggctgcaaagccagctnnnacctctgttctt 140
||||| || ||||||| ||||||||||||||||| || |||||| || ||||||||
Sbjct: 61 tcacactttattctatttgttgaaggagaggctgctaaaccagctgttacttctgttctc 120
Query: 141 gaatctat 148
||||||||
Sbjct: 121 gaatctat 128
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 151 agccgcatttggaatgagacttg 173
||||||||||||||||| |||||
Sbjct: 184 agccgcatttggaatgaaacttg 206
Score = 34.2 bits (17), Expect = 6.0
Identities = 42/53 (79%)
Strand = Plus / Plus
Query: 232 aacatggaaatgnnnattattatgnnnagggatgctagaatggattnnatcat 284
|||||||||||| ||| ||||| ||||| ||| ||||||||| |||||
Sbjct: 265 aacatggaaatggctattgttatggcaagggaggctggaatggattggatcat 317
>gb|BQ239666.1|BQ239666 TaE05028C01R TaE05 Triticum aestivum cDNA clone TaE05028C01R, mRNA
sequence
Length = 531
Score = 129 bits (65), Expect = 1e-028
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||
Sbjct: 434 agatctgtataacgggaagcacatctgctagcttacaccaaattcttccatggttgtatt 493
Query: 61 atcacaatgtcattggtgtttcaca 85
||||||| |||||||||||||||||
Sbjct: 494 atcacaaggtcattggtgtttcaca 518
>gb|BE500437.1|BE500437 WHE0987-0990_M05_M05ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0987-0990_M05_M05, mRNA
sequence
Length = 273
Score = 48.1 bits (24), Expect = 4e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacacca 40
||||||||||| |||||||| |||||||| || |||||||
Sbjct: 230 agatctgtatcccgggaagcccatctgctagcttacacca 269
>gb|CA743809.1|CA743809 wri1s.pk005.a4 wri1s Triticum aestivum cDNA clone wri1s.pk005.a4 5'
end, mRNA sequence
Length = 614
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 138 cttgaatctattcagcc 154
|||||||||||||||||
Sbjct: 480 cttgaatctattcagcc 464
Database: Triticum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:43 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,141
Number of Sequences: 636343
Number of extensions: 33141
Number of successful extensions: 9805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9794
Number of HSP's gapped (non-prelim): 11
length of query: 352
length of database: 367,240,239
effective HSP length: 19
effective length of query: 333
effective length of database: 355,149,722
effective search space: 118264857426
effective search space used: 118264857426
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)