BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF14f01.yg.2.1
(319 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ614103.1|AJ614103 AJ614103 Triticum turgidum subsp. du... 44 0.006
>gb|AJ614103.1|AJ614103 AJ614103 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 09755R, mRNA
sequence
Length = 312
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 51 gatgcttggattatagccaagacccattacatgccatg 88
||||||||||||||| ||||| ||||| |||||||||
Sbjct: 42 gatgcttggattatacccaaggcccatctcatgccatg 5
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,521
Number of Sequences: 636343
Number of extensions: 26521
Number of successful extensions: 7142
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7141
Number of HSP's gapped (non-prelim): 1
length of query: 319
length of database: 367,240,239
effective HSP length: 19
effective length of query: 300
effective length of database: 355,149,722
effective search space: 106544916600
effective search space used: 106544916600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)