BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE8g03.yg.2.1
(360 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ252937.1|BJ252937 BJ252937 Y. Ogihara unpublished cDNA... 96 2e-018
gb|BJ265398.1|BJ265398 BJ265398 Y. Ogihara unpublished cDNA... 96 2e-018
gb|CD454163.1|CD454163 WHE0984_H06_O12ZT CS wheat pre-anthe... 96 2e-018
gb|AF347067.1| Triticum aestivum sucrose-phosphate synthase... 96 2e-018
gb|CD922362.1|CD922362 G750.102I14F010528 G750 Triticum aes... 84 7e-015
gb|BJ255184.1|BJ255184 BJ255184 Y. Ogihara unpublished cDNA... 80 1e-013
gb|BJ261640.1|BJ261640 BJ261640 Y. Ogihara unpublished cDNA... 80 1e-013
gb|BJ265682.1|BJ265682 BJ265682 Y. Ogihara unpublished cDNA... 80 1e-013
gb|CD454742.1|CD454742 WHE2341_B06_C11ZT CS wheat pre-anthe... 80 1e-013
gb|AF347068.1| Triticum aestivum sucrose-phosphate synthase... 80 1e-013
gb|CA741934.1|CA741934 wia1c.pk002.c15 wia1c Triticum aesti... 70 1e-010
gb|BQ901635.1|BQ901635 Ta02_14b06_R Ta02_AAFC_ECORC_Fusariu... 64 7e-009
gb|BE500424.1|BE500424 WHE0987-0990_O07_O07ZS Wheat pre-ant... 56 2e-006
gb|BG263365.1|BG263365 WHE2341_B06_C11ZS Wheat pre-anthesis... 48 4e-004
>gb|BJ252937.1|BJ252937 BJ252937 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf26j11 3', mRNA sequence
Length = 584
Score = 95.6 bits (48), Expect = 2e-018
Identities = 159/196 (81%)
Strand = Plus / Plus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| |||||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 309 gacgggacgacgtcttccttgtggtaactccctgagctcctcagcaggtcctcggagcct 368
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || ||| ||||| |||||||||| || || |||||||||||| |
Sbjct: 369 ttctcggtgacgcctttgacgatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 428
Query: 141 tcggtgtcgccatgttccccagtgatcagatacatgttccccacatataggccccagcgc 200
|||||||||||||||||||| || || |||||||| ||||| ||||||||||||
Sbjct: 429 tcggtgtcgccatgttccccgaggacaaggtacatgttgcccacgggcaggccccagcgc 488
Query: 201 acaaaaagatacctga 216
||||| || |||||||
Sbjct: 489 acaaagaggtacctga 504
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 498 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 541
>gb|BJ265398.1|BJ265398 BJ265398 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh21m21 3', mRNA sequence
Length = 652
Score = 95.6 bits (48), Expect = 2e-018
Identities = 159/196 (81%)
Strand = Plus / Plus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| |||||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 323 gacgggacgacgtcttccttgtggtaactccctgagctcctcagcaggtcctcggagcct 382
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || ||| ||||| |||||||||| || || |||||||||||| |
Sbjct: 383 ttctcggtgacgcctttgacgatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 442
Query: 141 tcggtgtcgccatgttccccagtgatcagatacatgttccccacatataggccccagcgc 200
|||||||||||||||||||| || || |||||||| ||||| ||||||||||||
Sbjct: 443 tcggtgtcgccatgttccccgaggacaaggtacatgttgcccacgggcaggccccagcgc 502
Query: 201 acaaaaagatacctga 216
||||| || |||||||
Sbjct: 503 acaaagaggtacctga 518
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctgaagccttgtcgagttc 353
||||||||||| |||||||||||||| | |||||||||||||| | ||| || ||||||
Sbjct: 512 tacctgagtgcttgtgaccttgatgccatgagagggacaacctgcatcctcgttgagttc 571
Query: 354 ctgcagt 360
| |||||
Sbjct: 572 cggcagt 578
>gb|CD454163.1|CD454163 WHE0984_H06_O12ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0984_H06_O12, mRNA sequence
Length = 687
Score = 95.6 bits (48), Expect = 2e-018
Identities = 159/196 (81%)
Strand = Plus / Plus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| |||||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 357 gacgggacgacgtcttccttgtggtaactccctgagctcctcagcaggtcctcggagcct 416
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || ||| ||||| |||||||||| || || |||||||||||| |
Sbjct: 417 ttctcggtgacgcctttgacgatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 476
Query: 141 tcggtgtcgccatgttccccagtgatcagatacatgttccccacatataggccccagcgc 200
|||||||||||||||||||| || || |||||||| ||||| ||||||||||||
Sbjct: 477 tcggtgtcgccatgttccccgaggacaaggtacatgttgcccacgggcaggccccagcgc 536
Query: 201 acaaaaagatacctga 216
||||| || |||||||
Sbjct: 537 acaaagaggtacctga 552
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctgaagccttgtcgagttc 353
||||||||||| |||||||||||||| | |||||||||||||| | ||| || ||||||
Sbjct: 546 tacctgagtgcttgtgaccttgatgccatgagagggacaacctgcatcctcgttgagttc 605
Query: 354 ctgcagt 360
| |||||
Sbjct: 606 cggcagt 612
>gb|AF347067.1| Triticum aestivum sucrose-phosphate synthase 5 mRNA, partial cds
Length = 1999
Score = 95.6 bits (48), Expect = 2e-018
Identities = 159/196 (81%)
Strand = Plus / Minus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| |||||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 1638 gacgggacgacgtcttccttgtggtaactccctgagctcctcagcaggtcctcggagcct 1579
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || ||| ||||| |||||||||| || || |||||||||||| |
Sbjct: 1578 ttctcggtgacgcctttgacgatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 1519
Query: 141 tcggtgtcgccatgttccccagtgatcagatacatgttccccacatataggccccagcgc 200
|||||||||||||||||||| || || |||||||| ||||| ||||||||||||
Sbjct: 1518 tcggtgtcgccatgttccccgaggacaaggtacatgttgcccacgggcaggccccagcgc 1459
Query: 201 acaaaaagatacctga 216
||||| || |||||||
Sbjct: 1458 acaaagaggtacctga 1443
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctgaagccttgtcgagttc 353
||||||||||| |||||||||||||| | |||||||||||||| | ||| || ||||||
Sbjct: 1449 tacctgagtgcttgtgaccttgatgccatgagagggacaacctgcatcctcgttgagttc 1390
Query: 354 ctgcagt 360
| |||||
Sbjct: 1389 cggcagt 1383
>gb|CD922362.1|CD922362 G750.102I14F010528 G750 Triticum aestivum cDNA clone G750102I14,
mRNA sequence
Length = 531
Score = 83.8 bits (42), Expect = 7e-015
Identities = 135/166 (81%)
Strand = Plus / Minus
Query: 51 cctgggctcctcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtc 110
|||| |||||||||||| | || || |||||||||||||| || ||| ||||| |||
Sbjct: 445 cctgagctcctcagcaggtcctcggagcctttctcggtgacgcctttgacgatcaccgtc 386
Query: 111 ttgtgtaacccagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcaga 170
||||||| || || |||||||||||| | |||||||||||||||||||| || ||
Sbjct: 385 ttgtgtagtcctgaaagcatctcctcacggtcggtgtcgccatgttccccgaggacaagg 326
Query: 171 tacatgttccccacatataggccccagcgcacaaaaagatacctga 216
|||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 325 tacatgttgcccacgggcaggccccagcgcacaaagaggtacctga 280
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctgaagccttgtcgagttc 353
||||||||||| |||||||||||||| | |||||||||||||| | ||| || ||||||
Sbjct: 286 tacctgagtgcttgtgaccttgatgccatgagagggacaacctgcatcctcgttgagttc 227
Query: 354 ctgcagt 360
| |||||
Sbjct: 226 cggcagt 220
>gb|BJ255184.1|BJ255184 BJ255184 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8l03 3', mRNA sequence
Length = 560
Score = 79.8 bits (40), Expect = 1e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| || ||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 328 gacgggacaacgtcttccttgtggtaactccctgagctcctcagcaggtcctctgagcct 387
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || |||||||| |||||||||| || || |||||||||||| |
Sbjct: 388 ttctcggtgacgcctttaacaatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 447
Query: 141 tcggtgtcgccatgttcccc 160
||||||||||||||||||||
Sbjct: 448 tcggtgtcgccatgttcccc 467
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 517 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 560
>gb|BJ261640.1|BJ261640 BJ261640 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh3o22 3', mRNA sequence
Length = 736
Score = 79.8 bits (40), Expect = 1e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| || ||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 242 gacgggacaacgtcttccttgtggtaactccctgagctcctcagcaggtcctctgagcct 301
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || |||||||| |||||||||| || || |||||||||||| |
Sbjct: 302 ttctcggtgacgcctttaacaatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 361
Query: 141 tcggtgtcgccatgttcccc 160
||||||||||||||||||||
Sbjct: 362 tcggtgtcgccatgttcccc 381
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 431 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 474
>gb|BJ265682.1|BJ265682 BJ265682 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh22p10 3', mRNA sequence
Length = 617
Score = 79.8 bits (40), Expect = 1e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| || ||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 280 gacgggacaacgtcttccttgtggtaactccctgagctcctcagcaggtcctctgagcct 339
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || |||||||| |||||||||| || || |||||||||||| |
Sbjct: 340 ttctcggtgacgcctttaacaatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 399
Query: 141 tcggtgtcgccatgttcccc 160
||||||||||||||||||||
Sbjct: 400 tcggtgtcgccatgttcccc 419
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 469 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 512
>gb|CD454742.1|CD454742 WHE2341_B06_C11ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2341_B06_C11, mRNA sequence
Length = 663
Score = 79.8 bits (40), Expect = 1e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| || ||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 352 gacgggacaacgtcttccttgtggtaactccctgagctcctcagcaggtcctctgagcct 411
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || |||||||| |||||||||| || || |||||||||||| |
Sbjct: 412 ttctcggtgacgcctttaacaatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 471
Query: 141 tcggtgtcgccatgttcccc 160
||||||||||||||||||||
Sbjct: 472 tcggtgtcgccatgttcccc 491
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 541 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 584
>gb|AF347068.1| Triticum aestivum sucrose-phosphate synthase 6 mRNA, partial cds
Length = 1030
Score = 79.8 bits (40), Expect = 1e-013
Identities = 115/140 (82%)
Strand = Plus / Minus
Query: 21 gacggcacgacgtcgtccttcttgtagcttcctgggctcctcagcagcccttccgaacct 80
||||| || ||||| ||||| | ||| || |||| |||||||||||| | || || |||
Sbjct: 671 gacgggacaacgtcttccttgtggtaactccctgagctcctcagcaggtcctctgagcct 612
Query: 81 ttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctcatga 140
||||||||||| || |||||||| |||||||||| || || |||||||||||| |
Sbjct: 611 ttctcggtgacgcctttaacaatcaccgtcttgtgtagtcctgaaagcatctcctcacgg 552
Query: 141 tcggtgtcgccatgttcccc 160
||||||||||||||||||||
Sbjct: 551 tcggtgtcgccatgttcccc 532
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 482 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 439
>gb|CA741934.1|CA741934 wia1c.pk002.c15 wia1c Triticum aestivum cDNA clone wia1c.pk002.c15
5' end, mRNA sequence
Length = 569
Score = 69.9 bits (35), Expect = 1e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 78 cctttctcggtgacaccccggacaatcacagtcttgtgtaacccagatagcatctcctca 137
|||||||||||||| || |||||||| |||||||||| || || ||||||||||||
Sbjct: 498 cctttctcggtgacgcctttaacaatcaccgtcttgtgtagtcctgaaagcatctcctca 439
Query: 138 tgatcggtgtcgccatgttcccc 160
| ||||||||||||||||||||
Sbjct: 438 cggtcggtgtcgccatgttcccc 416
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 366 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 323
>gb|BQ901635.1|BQ901635 Ta02_14b06_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_14b06, mRNA
sequence
Length = 500
Score = 63.9 bits (32), Expect = 7e-009
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 99 acaatcacagtcttgtgtaacccagatagcatctcctcatgatcggtgtcgccatgttcc 158
|||||||| |||||||||| || || |||||||||||| | |||||||||||||||||
Sbjct: 422 acaatcaccgtcttgtgtagtcctgaaagcatctcctcacggycggtgtcgccatgttcc 481
Query: 159 cc 160
||
Sbjct: 482 cc 483
>gb|BE500424.1|BE500424 WHE0987-0990_O07_O07ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0987-0990_O07_O07, mRNA
sequence
Length = 539
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 467 tacctgagtgcttgtgaccttgatgccatgagagggacaacctg 424
Score = 40.1 bits (20), Expect = 0.100
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 141 tcggtgtcgccatgttcccc 160
||||||||||||||||||||
Sbjct: 536 tcggtgtcgccatgttcccc 517
>gb|BG263365.1|BG263365 WHE2341_B06_C11ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2341_B06_C11, mRNA sequence
Length = 440
Score = 48.1 bits (24), Expect = 4e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 298 tgagtgcctgtgaccttgatgctagcagagggacaacctg 337
||||||| |||||||||||||| | ||||||||||||||
Sbjct: 395 tgagtgcttgtgaccttgatgccatgagagggacaacctg 356
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,640
Number of Sequences: 636343
Number of extensions: 61640
Number of successful extensions: 15925
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15885
Number of HSP's gapped (non-prelim): 34
length of query: 360
length of database: 367,240,239
effective HSP length: 19
effective length of query: 341
effective length of database: 355,149,722
effective search space: 121106055202
effective search space used: 121106055202
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)