BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK163680.1|CK163680 FGAS016310 Triticum aestivum FGAS: L... 246 7e-064
gb|CD882666.1|CD882666 F1.110K22F010502 F1 Triticum aestivu... 242 1e-062
gb|BJ209432.1|BJ209432 BJ209432 Y. Ogihara unpublished cDNA... 236 7e-061
gb|BQ620368.1|BQ620368 TaLr1166H03R TaLr1 Triticum aestivum... 226 7e-058
gb|CA498544.1|CA498544 WHE3244_G06_N12ZT Wheat meiotic anth... 218 2e-055
gb|CD921760.1|CD921760 G750.001O08F010308 G750 Triticum aes... 218 2e-055
gb|BE604359.1|BE604359 WHE1405-1408_G02_G02ZS Wheat drought... 210 4e-053
gb|BU672156.1|BU672156 WHE3301_C05_E09ZS Chinese Spring whe... 210 4e-053
gb|CK162546.1|CK162546 FGAS015142 Triticum aestivum FGAS: L... 202 1e-050
gb|BQ804745.1|BQ804745 WHE3558_D06_H12ZS Wheat developing g... 182 9e-045
gb|BJ290807.1|BJ290807 BJ290807 Y. Ogihara unpublished cDNA... 180 4e-044
gb|CA638851.1|CA638851 wre1n.pk0017.e6 wre1n Triticum aesti... 178 1e-043
gb|CK163206.1|CK163206 FGAS015826 Triticum aestivum FGAS: L... 176 6e-043
gb|BQ744069.1|BQ744069 WHE4111_D05_H09ZS Wheat salt-stresse... 155 2e-036
gb|AL823053.1|AL823053 AL823053 p:133 Triticum aestivum cDN... 149 1e-034
gb|BQ788568.1|BQ788568 WHE4151_D01_G01ZS Wheat CS whole pla... 135 2e-030
gb|CD938610.1|CD938610 OV.110H18F010312 OV Triticum aestivu... 127 5e-028
gb|CD876799.1|CD876799 AZO3.110P05F011010 AZO3 Triticum aes... 109 1e-022
gb|BI751617.1|BI751617 Ta01_16c08_R Ta01_AAFC_ECORC_Fusariu... 72 2e-011
gb|CK163208.1|CK163208 FGAS015828 Triticum aestivum FGAS: L... 72 2e-011
gb|CK194020.1|CK194020 FGAS002439 Triticum aestivum FGAS: L... 72 2e-011
gb|CK203901.1|CK203901 FGAS012436 Triticum aestivum FGAS: L... 72 2e-011
gb|CK204227.1|CK204227 FGAS012763 Triticum aestivum FGAS: L... 72 2e-011
gb|CV761736.1|CV761736 FGAS056124 Triticum aestivum FGAS: L... 68 4e-010
gb|CA647598.1|CA647598 wre1n.pk0112.c5 wre1n Triticum aesti... 60 9e-008
gb|CA651482.1|CA651482 wre1n.pk177.e10 wre1n Triticum aesti... 60 9e-008
gb|BQ237865.1|BQ237865 TaE05011C08F TaE05 Triticum aestivum... 50 9e-005
gb|BE402152.1|BE402152 CSB005A02F990908 ITEC CSB Wheat Endo... 48 3e-004
gb|BE500801.1|BE500801 WHE0991-0994_H07_H07ZS Wheat pre-ant... 48 3e-004
gb|AW448208.1|AW448208 BRY_1430 BRY Triticum aestivum cDNA ... 48 3e-004
gb|BJ223222.1|BJ223222 BJ223222 Y. Ogihara unpublished cDNA... 48 3e-004
gb|BQ605854.1|BQ605854 BRY_1430 wheat EST endosperm library... 48 3e-004
gb|BQ607689.1|BQ607689 BRY_3584 wheat EST endosperm library... 48 3e-004
gb|CV064423.1|CV064423 WNEL10g3 Wheat EST endosperm library... 48 3e-004
gb|CV764418.1|CV764418 FGAS058803 Triticum aestivum FGAS: L... 48 3e-004
gb|BJ289489.1|BJ289489 BJ289489 Y. Ogihara unpublished cDNA... 44 0.005
>gb|CK163680.1|CK163680 FGAS016310 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1124
Score = 246 bits (124), Expect = 7e-064
Identities = 253/296 (85%)
Strand = Plus / Minus
Query: 9 tggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtagaccgtg 68
|||||||| ||||| ||||| || |||||||||||| ||||||| |||||||| ||||||
Sbjct: 775 tggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaaaccgtg 716
Query: 69 aggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggaca 128
|| ||| |||||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct: 715 agcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttggggact 656
Query: 129 ccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctg 188
||| ||||||||| |||||||| || || || || ||||| || |||||||||||||||
Sbjct: 655 ccgagggggtcttccccgatgtagccactggggtgggcgccgaccgggttgaagtacctg 596
Query: 189 agcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtcttcaatc 248
|||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||
Sbjct: 595 agcagtatgatcttccagtcggggtccgagcgctggaggtcacggcagatgtcttcaatg 536
Query: 249 acaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtgca 304
|| ||||| ||||| || || || ||||| ||| |||||||||| || ||||||||
Sbjct: 535 acgagcttagtccggccgtaagggttggtcgcggagagcgggaactcctcggtgca 480
>gb|CD882666.1|CD882666 F1.110K22F010502 F1 Triticum aestivum cDNA clone F1110K22, mRNA
sequence
Length = 503
Score = 242 bits (122), Expect = 1e-062
Identities = 257/302 (85%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| |||| || ||||||||
Sbjct: 375 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtattcggtcccgtaa 316
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|||||||| ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 315 accgtgagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 256
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| ||| ||||||||| |||||||| || || || || ||||| || |||||||||
Sbjct: 255 gggactccgagggggtcttccccgatgtagccactggggtgggcgccgaccgggttgaag 196
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
|||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||
Sbjct: 195 tacctgagcagtatgatcttccagtcggggtccgagcgctggaggtcacggcagatgtct 136
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| || ||||| ||||| || || || ||||| ||| |||||||||| || ||||||
Sbjct: 135 tcaatgacgagcttagtccggccgtaagggttggtcgcggagagcgggaactcctcggtg 76
Query: 303 ca 304
||
Sbjct: 75 ca 74
>gb|BJ209432.1|BJ209432 BJ209432 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh14d01 5', mRNA sequence
Length = 525
Score = 236 bits (119), Expect = 7e-061
Identities = 258/303 (85%), Gaps = 1/303 (0%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatcc-ttggtgctgtagtccgtcccgta 61
||||| |||||||| ||||| ||||| || |||||| |||||| ||||||| ||||||||
Sbjct: 525 acaacatggatgtagtcacgtacccctgttccatcccttggtgttgtagtcggtcccgta 466
Query: 62 gaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 465 aaccgtgagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgtt 406
Query: 122 cgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaa 181
||||| ||| ||||||||| |||||||| || || || || ||||| || ||||||||
Sbjct: 405 ggggactccgagggggtcttccccgatgtagccactggggtgggcgccgaccgggttgaa 346
Query: 182 gtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtc 241
||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 345 gtacctgagcagtatgatcttccagtcggggtccgagcgctggaggtcacggcagatgtc 286
Query: 242 ttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggt 301
|||||| || ||||| ||||| || || || ||||| ||| |||||||||| || |||||
Sbjct: 285 ttcaatgacgagcttagtccggccgtaagggttggtcgcggagagcgggaactcctcggt 226
Query: 302 gca 304
|||
Sbjct: 225 gca 223
>gb|BQ620368.1|BQ620368 TaLr1166H03R TaLr1 Triticum aestivum cDNA clone TaLr1166H03R, mRNA
sequence
Length = 524
Score = 226 bits (114), Expect = 7e-058
Identities = 255/302 (84%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||| ||
Sbjct: 322 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccataa 263
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|||||||| || |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 262 accgtgagcgcgggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 203
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| ||| ||||||||| |||||||| || || || || ||||| || |||||||||
Sbjct: 202 gggactccgagggggtcttccccgatgtagccactcgggtgcgcgccgaccgggttgaag 143
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||
Sbjct: 142 tacctcagcaggatgatcttccagtcggggtccgagcgctggaggtcgcggcagatgtct 83
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| |||||||| || || || || || ||||| ||| |||||||||| || ||||||
Sbjct: 82 tcaatgacaagcttagttcggccgtaagggttggtcgcggagagcgggaactcctcggtg 23
Query: 303 ca 304
||
Sbjct: 22 ca 21
>gb|CA498544.1|CA498544 WHE3244_G06_N12ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3244_G06_N12, mRNA sequence
Length = 694
Score = 218 bits (110), Expect = 2e-055
Identities = 245/290 (84%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 476 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 417
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || || |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 416 accgtcagcgcgggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 357
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| ||| ||||||||| |||||||| || || || || ||||| || |||||||||
Sbjct: 356 gggactccgagggggtcttccccgatgtagccactcgggtgcgcgccgaccgggttgaag 297
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||
Sbjct: 296 tacctcagcaggatgatcttccagtcggggtccgagcgctggaggtcgcggcagatgtct 237
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaa 292
||||| |||||||| || || || || || ||||| ||| ||||||||||
Sbjct: 236 tcaatgacaagcttagttcggccgtaagggttggtcgcggagagcgggaa 187
>gb|CD921760.1|CD921760 G750.001O08F010308 G750 Triticum aestivum cDNA clone G750001O08,
mRNA sequence
Length = 655
Score = 218 bits (110), Expect = 2e-055
Identities = 245/290 (84%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 417 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 358
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || || |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 357 accgtcagcgcgggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 298
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| ||| ||||||||| |||||||| || || || || ||||| || |||||||||
Sbjct: 297 gggactccgagggggtcttccccgatgtagccactcgggtgcgcgccgaccgggttgaag 238
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||
Sbjct: 237 tacctcagcaggatgatcttccagtcggggtccgagcgctggaggtcgcggcagatgtct 178
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaa 292
||||| |||||||| || || || || || ||||| ||| ||||||||||
Sbjct: 177 tcaatgacaagcttagttcggccgtaagggttggtcgcggagagcgggaa 128
>gb|BE604359.1|BE604359 WHE1405-1408_G02_G02ZS Wheat drought stressed leaf cDNA library
Triticum aestivum cDNA clone WHE1405-1408_G02_G02, mRNA
sequence
Length = 559
Score = 210 bits (106), Expect = 4e-053
Identities = 253/302 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || ||||||||| || ||||||| ||||| ||
Sbjct: 431 acaacatggatgtagtcacgtacccctgttccatccttgctgttgtagtcggtcccataa 372
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 371 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 312
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| ||||| || |||||||| || |||||||||
Sbjct: 311 gggactccaagggggtcttccccgatgtagccgctcgggtgagcgccgactgggttgaag 252
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| |||||||||||||||||||| ||||| ||||| |||| ||| ||||||||||||
Sbjct: 251 tacctcagcagtatgatcttccagtcagggtccgagcgctggaggtcacggcagatgtct 192
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| ||||||||||| | || || || ||||| || |||||||||| || ||||||
Sbjct: 191 tcaatgacaagctttgttctgccgtaagggttggtcgccgagagcgggaactcctcggtg 132
Query: 303 ca 304
||
Sbjct: 131 ca 130
>gb|BU672156.1|BU672156 WHE3301_C05_E09ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3301_C05_E09,
mRNA sequence
Length = 621
Score = 210 bits (106), Expect = 4e-053
Identities = 253/302 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || ||||||||| || ||||||| ||||| ||
Sbjct: 387 acaacatggatgtagtcacgtacccctgttccatccttgctgttgtagtcggtcccataa 328
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 327 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 268
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| ||||| || |||||||| || |||||||||
Sbjct: 267 gggactccaagggggtcttccccgatgtagccgctcgggtgagcgccgactgggttgaag 208
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| |||||||||||||||||||| ||||| ||||| |||| ||| ||||||||||||
Sbjct: 207 tacctcagcagtatgatcttccagtcagggtccgagcgctggaggtcacggcagatgtct 148
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| ||||||||||| | || || || ||||| || |||||||||| || ||||||
Sbjct: 147 tcaatgacaagctttgttctgccgtaagggttggtcgccgagagcgggaactcctcggtg 88
Query: 303 ca 304
||
Sbjct: 87 ca 86
>gb|CK162546.1|CK162546 FGAS015142 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1091
Score = 202 bits (102), Expect = 1e-050
Identities = 252/302 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || ||||||||| || ||||||| ||||| ||
Sbjct: 487 acaacatggatgtagtcacgtacccctgttccatccttgctgttgtagtcggtcccataa 428
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 427 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 368
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| ||||| || |||||||| || |||||||||
Sbjct: 367 gggactccaagggggtcttccccgatgtagccgctcgggtgagcgccgactgggttgaag 308
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| |||||||||||||||||| | ||||| ||||| |||| ||| ||||||||||||
Sbjct: 307 tacctcagcagtatgatcttccagccagggtccgagcgctggaggtcacggcagatgtct 248
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| ||||||||||| | || || || ||||| || |||||||||| || ||||||
Sbjct: 247 tcaatgacaagctttgttctgccgtaagggttggtcgccgagagcgggaactcctcggtg 188
Query: 303 ca 304
||
Sbjct: 187 ca 186
>gb|BQ804745.1|BQ804745 WHE3558_D06_H12ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3558_D06_H12, mRNA sequence
Length = 762
Score = 182 bits (92), Expect = 9e-045
Identities = 185/216 (85%)
Strand = Plus / Minus
Query: 89 agcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcgccgat 148
|||||||||||| || ||||||||||||||||| ||||| || ||||||||| |||||
Sbjct: 715 agcgacttgctggacatagggcatcaggttgttggggactccaagggggtcttccccgat 656
Query: 149 gtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttccagtc 208
||| ||||| || |||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 655 gtagccgctcgggtgagcgccgactgggttgaagtacctcagcagtatgatcttccagtc 596
Query: 209 ggggtcggagcggtggacgtcgcggcagatgtcttcaatcacaagctttgtccgcccata 268
||||| ||||| |||| ||| ||||||||||||||||| ||||||||||| | || ||
Sbjct: 595 agggtccgagcgctggaggtcacggcagatgtcttcaatgacaagctttgttctgccgta 536
Query: 269 gggattggtggcgcagagcgggaattcttcggtgca 304
|| ||||| || |||||||||| || ||||||||
Sbjct: 535 agggttggtcgccgagagcgggaactcctcggtgca 500
>gb|BJ290807.1|BJ290807 BJ290807 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl20f04 5', mRNA sequence
Length = 414
Score = 180 bits (91), Expect = 4e-044
Identities = 178/207 (85%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 207 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 148
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|||||||| ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 147 accgtgagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 88
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| ||| ||||||||| |||||||| || || || || ||||| || |||||||||
Sbjct: 87 gggactccgagggggtcttccccgatgtagccactggggtgggcgccgaccgggttgaag 28
Query: 183 tacctgagcagtatgatcttccagtcg 209
|||||||||||||||||||||||||||
Sbjct: 27 tacctgagcagtatgatcttccagtcg 1
>gb|CA638851.1|CA638851 wre1n.pk0017.e6 wre1n Triticum aestivum cDNA clone wre1n.pk0017.e6
5' end, mRNA sequence
Length = 527
Score = 178 bits (90), Expect = 1e-043
Identities = 197/233 (84%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
||||| || |||||||||||| ||||||| ||||| || ||||| || || ||||
Sbjct: 279 acccctgttccatccttggtgttgtagtcggtcccataaaccgtcagcgcgggccgcctc 220
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|| ||||||||||| || || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 219 ccgacagcgacttgntggacatagggcatcaggttgttggggactccgagggggtcttcc 160
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|||||||| || || || || ||||| || |||||||||||||| ||||| |||||||||
Sbjct: 159 ccgatgtagccactcgggtgcgcgccgaccgggttgaagtacctcagcaggatgatcttc 100
Query: 204 cagtcggggtcggagcggtggacgtcgcggcagatgtcttcaatcacaagctt 256
||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||
Sbjct: 99 cagtcggggtccgagcgctggaggtcgcggcagatgtcttcaatgacaagctt 47
>gb|CK163206.1|CK163206 FGAS015826 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1090
Score = 176 bits (89), Expect = 6e-043
Identities = 249/302 (82%), Gaps = 1/302 (0%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| |||| |||| ||||| ||||||| ||||| ||
Sbjct: 886 acaacatggatgtagtcacgtacccctgtcc-atccntggtgttgtagtcggtcccataa 828
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || || |||||| |||||||||||||| || |||||||||||||
Sbjct: 827 accgtcagcgcgggccgcctcccgacagcgacttgctggacatagggcatcaggtgtgnn 768
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| ||| ||||||||| |||||||| || || || || ||||| || |||||||||
Sbjct: 767 gggactccgagggggtcttccccgatgtagccactcgggtgcgcgccgaccgggttgaag 708
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||
Sbjct: 707 tacctcagcaggatgatcttccagtcggggtccgagcgctggaggtcgcggcagatgtct 648
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| |||||||| || || || || || ||||| ||| |||||||||| || ||||||
Sbjct: 647 tcaatgacaagcttagttcggccgtaagggttggtcgcggagagcgggaactcctcggtg 588
Query: 303 ca 304
||
Sbjct: 587 ca 586
>gb|BQ744069.1|BQ744069 WHE4111_D05_H09ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4111_D05_H09, mRNA sequence
Length = 785
Score = 155 bits (78), Expect = 2e-036
Identities = 173/202 (85%), Gaps = 2/202 (0%)
Strand = Plus / Minus
Query: 92 gacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcgccgatgt- 150
||||||||| || ||||||||||||||||| ||||| ||| ||||||||| |||||||
Sbjct: 785 gacttgctggacatagggcatcaggttgtt-gggactccgagggggtcttccccgatgtt 727
Query: 151 acccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttccagtcgg 210
| || || || || ||||| || |||||||||||||| ||||| ||||||||||||||||
Sbjct: 726 agccactcgggtgcgcgccgaccgggttgaagtacctcagcaggatgatcttccagtcgg 667
Query: 211 ggtcggagcggtggacgtcgcggcagatgtcttcaatcacaagctttgtccgcccatagg 270
|||| ||||| |||| ||||||||||||||||||||| |||||||| || || || || |
Sbjct: 666 ggtccgagcgctggaggtcgcggcagatgtcttcaatgacaagcttagttcggccgtaag 607
Query: 271 gattggtggcgcagagcgggaa 292
| ||||| ||| ||||||||||
Sbjct: 606 ggttggtcgcggagagcgggaa 585
>gb|AL823053.1|AL823053 AL823053 p:133 Triticum aestivum cDNA clone E09_p133_plate_10, mRNA
sequence
Length = 381
Score = 149 bits (75), Expect = 1e-034
Identities = 184/219 (84%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || ||||||||| || ||||||| ||||| ||
Sbjct: 227 acaacatggatgtagtcacgtacccctgttccatccttgctgttgtagtcggtcccataa 168
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcat-caggttgtt 121
||||| || ||| |||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 167 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatacaggttgtt 108
Query: 122 cgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaa 181
||||| || ||||||||| |||||||| ||||| || |||||||| || ||||||||
Sbjct: 107 ggggactccaagggggtcttccccgatgtagccgctcgggtgagcgccgactgggttgaa 48
Query: 182 gtacctgagcagtatgatcttccagtcggggtcggagcg 220
|||||| |||||||||||||||||||| ||||| |||||
Sbjct: 47 gtacctcagcagtatgatcttccagtcagggtccgagcg 9
>gb|BQ788568.1|BQ788568 WHE4151_D01_G01ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4151_D01_G01, mRNA sequence
Length = 653
Score = 135 bits (68), Expect = 2e-030
Identities = 104/116 (89%)
Strand = Plus / Minus
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|||||||| ||||| || |||||||| || |||||||||||||| |||||||||||||||
Sbjct: 652 ccgatgtagccgctcgggtgagcgccgactgggttgaagtacctcagcagtatgatcttc 593
Query: 204 cagtcggggtcggagcggtggacgtcgcggcagatgtcttcaatcacaagctttgt 259
||||| ||||| ||||| |||| ||| ||||||||||||||||| |||||||||||
Sbjct: 592 cagtcagggtccgagcgctggaggtcacggcagatgtcttcaatgacaagctttgt 537
>gb|CD938610.1|CD938610 OV.110H18F010312 OV Triticum aestivum cDNA clone OV110H18, mRNA
sequence
Length = 726
Score = 127 bits (64), Expect = 5e-028
Identities = 112/128 (87%)
Strand = Plus / Minus
Query: 165 gcgccaacggggttgaagtacctgagcagtatgatcttccagtcggggtcggagcggtgg 224
||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct: 708 gcgccgaccgggttgaagtacctcagcaggatgatcttccagtcggggtccgagcgctgg 649
Query: 225 acgtcgcggcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcgcag 284
| ||||||||||||||||||||| |||||||| || || || || || ||||| ||| ||
Sbjct: 648 aggtcgcggcagatgtcttcaatgacaagcttagttcggccgtaagggttggtcgcggag 589
Query: 285 agcgggaa 292
||||||||
Sbjct: 588 agcgggaa 581
>gb|CD876799.1|CD876799 AZO3.110P05F011010 AZO3 Triticum aestivum cDNA clone AZO3110P05,
mRNA sequence
Length = 644
Score = 109 bits (55), Expect = 1e-022
Identities = 112/131 (85%)
Strand = Plus / Minus
Query: 174 gggttgaagtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcgg 233
|||||||||||||| | |||||||||||||||||| ||||| ||||| |||| ||| |||
Sbjct: 633 gggttgaagtacctcaccagtatgatcttccagtcagggtccgagcgctggaggtcacgg 574
Query: 234 cagatgtcttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaat 293
|||||||||||||| ||||||||||| | || || || ||||| || ||||||||||
Sbjct: 573 cagatgtcttcaatgacaagctttgttctgccgtaagggttggtcgccgagagcgggaac 514
Query: 294 tcttcggtgca 304
|| ||||||||
Sbjct: 513 tcctcggtgca 503
>gb|BI751617.1|BI751617 Ta01_16c08_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_16c08, mRNA
sequence
Length = 160
Score = 71.9 bits (36), Expect = 2e-011
Identities = 127/160 (79%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
||||| || |||||||||||| ||||||| ||||| || ||||| || || ||||
Sbjct: 160 acccctgttccatccttggtgttgtagtcggtcccataaaccgtcagcgcgggccgcctc 101
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|| ||| | ||| ||| || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 100 ccgacavcsactkbctggacatagggcatcaggttgttggggactccgagggggtcttcc 41
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagt 183
|||||||| || || || || ||||| || ||||||||||
Sbjct: 40 ccgatgtagccactcgggtgcgcgccgaccgggttgaagt 1
>gb|CK163208.1|CK163208 FGAS015828 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1094
Score = 71.9 bits (36), Expect = 2e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 174 gggttgaagtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcgg 233
|||||||||||||| ||||| ||||| ||||||||||| | ||||| |||| ||||||
Sbjct: 718 gggttgaagtacctcagcaggatgatgttccagtcgggtccagagcgctggagatcgcgg 659
Query: 234 cagatgtcttcaatcacaag 253
||||||| |||||| |||||
Sbjct: 658 cagatgtattcaatgacaag 639
>gb|CK194020.1|CK194020 FGAS002439 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 840
Score = 71.9 bits (36), Expect = 2e-011
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||||||||| |||||||| ||||||||||| |||||||| || || || | |||||
Sbjct: 421 cctcccaacagcaacttgctgaacgtagggcataaggttgtttggaactccacgtgggtc 362
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || || ||||| ||||| ||||||||||||||
Sbjct: 361 ttcaccaaggtatccactggggtgagccccaaccgggttgaagtacct 314
>gb|CK203901.1|CK203901 FGAS012436 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 858
Score = 71.9 bits (36), Expect = 2e-011
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||||||||| |||||||| ||||||||||| |||||||| || || || | |||||
Sbjct: 436 cctcccaacagcaacttgctgaacgtagggcataaggttgtttggaactccacgtgggtc 377
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || || ||||| ||||| ||||||||||||||
Sbjct: 376 ttcaccaaggtatccactggggtgagccccaaccgggttgaagtacct 329
>gb|CK204227.1|CK204227 FGAS012763 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 812
Score = 71.9 bits (36), Expect = 2e-011
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||||||||| |||||||| ||||||||||| |||||||| || || || | |||||
Sbjct: 437 cctcccaacagcaacttgctgaacgtagggcataaggttgtttggaactccacgtgggtc 378
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || || ||||| ||||| ||||||||||||||
Sbjct: 377 ttcaccaaggtatccactggggtgagccccaaccgggttgaagtacct 330
>gb|CV761736.1|CV761736 FGAS056124 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 875
Score = 67.9 bits (34), Expect = 4e-010
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 189 agcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtcttcaatc 248
|||||||||||||||||||| ||||| ||||| |||| ||| || ||||| ||||||||
Sbjct: 718 agcagtatgatcttccagtcagggtccgagcgctggaggtcccgccagat-tcttcaatg 660
Query: 249 acaagctttg 258
||||||||||
Sbjct: 659 acaagctttg 650
>gb|CA647598.1|CA647598 wre1n.pk0112.c5 wre1n Triticum aestivum cDNA clone wre1n.pk0112.c5
5' end, mRNA sequence
Length = 367
Score = 60.0 bits (30), Expect = 9e-008
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 87 cctcccaacagcaacttgctgaacgtagggcataaggttgtt 46
>gb|CA651482.1|CA651482 wre1n.pk177.e10 wre1n Triticum aestivum cDNA clone wre1n.pk177.e10
5' end, mRNA sequence
Length = 346
Score = 60.0 bits (30), Expect = 9e-008
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 55 cctcccaacagcaacttgctgaacgtagggcataaggttgtt 14
>gb|BQ237865.1|BQ237865 TaE05011C08F TaE05 Triticum aestivum cDNA clone TaE05011C08F, mRNA
sequence
Length = 613
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 80 cctcccaacagcgacttgctgcacgtagggcat 112
|||||||||||| |||||||| |||||||||||
Sbjct: 581 cctcccaacagcaacttgctgaacgtagggcat 613
>gb|BE402152.1|BE402152 CSB005A02F990908 ITEC CSB Wheat Endosperm Library Triticum aestivum
cDNA clone CSB005A02, mRNA sequence
Length = 619
Score = 48.1 bits (24), Expect = 3e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggac 127
|||||| ||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 573 cctcccgacaacgacttgctgcacatagggc-tcaggttgttggggac 527
>gb|BE500801.1|BE500801 WHE0991-0994_H07_H07ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_H07_H07, mRNA
sequence
Length = 495
Score = 48.1 bits (24), Expect = 3e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggac 127
|||||| ||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 101 cctcccgacaacgacttgctgcacatagggc-tcaggttgttggggac 55
>gb|AW448208.1|AW448208 BRY_1430 BRY Triticum aestivum cDNA clone P36-1L, mRNA sequence
Length = 816
Score = 48.1 bits (24), Expect = 3e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggac 127
|||||| ||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 488 cctcccgacaacgacttgctgcacatagggc-tcaggttgttggggac 442
>gb|BJ223222.1|BJ223222 BJ223222 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl3i24 5', mRNA sequence
Length = 457
Score = 48.1 bits (24), Expect = 3e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggac 127
|||||| ||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 55 cctcccgacaacgacttgctgcacatagggc-tcaggttgttggggac 9
>gb|BQ605854.1|BQ605854 BRY_1430 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 816
Score = 48.1 bits (24), Expect = 3e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggac 127
|||||| ||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 488 cctcccgacaacgacttgctgcacatagggc-tcaggttgttggggac 442
>gb|BQ607689.1|BQ607689 BRY_3584 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 619
Score = 48.1 bits (24), Expect = 3e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggac 127
|||||| ||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 573 cctcccgacaacgacttgctgcacatagggc-tcaggttgttggggac 527
>gb|CV064423.1|CV064423 WNEL10g3 Wheat EST endosperm library Triticum aestivum cDNA clone
WNEL10g3 5' similar to Triticum aestivum p34cdc2, mRNA
sequence
Length = 686
Score = 48.1 bits (24), Expect = 3e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggac 127
|||||| ||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 214 cctcccgacaacgacttgctgcacatagggc-tcaggttgttggggac 168
>gb|CV764418.1|CV764418 FGAS058803 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 827
Score = 48.1 bits (24), Expect = 3e-004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 233 gcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaa 292
||||||||||||||| || ||||| ||||| || || || ||||| ||| |||||||||
Sbjct: 826 gcagatgtcttcaatgacgagcttagtccggccgtaagggttggtcgcggagagcgggac 767
Query: 293 ttcttcggtgca 304
| | ||||||||
Sbjct: 766 tccctcggtgca 755
>gb|BJ289489.1|BJ289489 BJ289489 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl5j02 5', mRNA sequence
Length = 523
Score = 44.1 bits (22), Expect = 0.005
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 235 agatgtcttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaatt 294
||||||||||||| ||||||||||| | || || || ||||| || |||||||||| |
Sbjct: 523 agatgtcttcaatgacaagctttgttctgccgtaagggttggtcgccgagagcgggaact 464
Query: 295 cttcggtgca 304
| ||||||||
Sbjct: 463 cctcggtgca 454
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,307
Number of Sequences: 636343
Number of extensions: 46307
Number of successful extensions: 11962
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11890
Number of HSP's gapped (non-prelim): 63
length of query: 308
length of database: 367,240,239
effective HSP length: 19
effective length of query: 289
effective length of database: 355,149,722
effective search space: 102638269658
effective search space used: 102638269658
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)