BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9232502.2.1
(560 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG605054.1|BG605054 WHE2326_H10_O20ZS Wheat pre-anthesis... 272 2e-071
gb|BE499632.1|BE499632 WHE0962_C03_F06ZS Wheat pre-anthesis... 266 1e-069
gb|CA624181.1|CA624181 wl1n.pk0115.g7 wl1n Triticum aestivu... 266 1e-069
gb|BQ483872.1|BQ483872 WHE3513_E11_I21ZS Wheat unstressed r... 264 6e-069
gb|DR737865.1|DR737865 FGAS083082 Triticum aestivum FGAS: L... 254 6e-066
gb|CN010649.1|CN010649 WHE3874_E04_J08ZS Wheat Fusarium gra... 250 9e-065
gb|CK217774.1|CK217774 FGAS029776 Triticum aestivum FGAS: L... 248 3e-064
gb|BQ483168.1|BQ483168 WHE3505_D08_G15ZS Wheat unstressed r... 214 5e-054
gb|BI480414.1|BI480414 WHE2902_H01_O02ZS Wheat aluminum-str... 194 5e-048
gb|CK195906.1|CK195906 FGAS004352 Triticum aestivum FGAS: L... 161 6e-038
gb|BQ838433.1|BQ838433 WHE2910_D05_G10ZS Wheat aluminum-str... 157 1e-036
gb|AL822677.1|AL822677 AL822677 p:335 Triticum aestivum cDN... 153 2e-035
gb|BU100984.1|BU100984 WHE3360_D06_G12ZS Chinese Spring alu... 153 2e-035
gb|BU101081.1|BU101081 WHE3361_D06_H11ZS Chinese Spring alu... 153 2e-035
gb|CA727436.1|CA727436 wdi1c.pk001.o7 wdi1c Triticum aestiv... 141 6e-032
gb|BG262892.1|BG262892 WHE0948_E10_J20ZS Wheat 5-15 DAP spi... 105 3e-021
gb|BG262506.1|BG262506 WHE0936_G08_N16ZS Wheat 5-15 DAP spi... 86 3e-015
gb|CA732852.1|CA732852 wlp1c.pk006.o23 wlp1c Triticum aesti... 72 4e-011
gb|CA623111.1|CA623111 wl1n.pk0090.g12 wl1n Triticum aestiv... 68 7e-010
gb|DR737864.1|DR737864 FGAS083081 Triticum aestivum FGAS: L... 58 7e-007
gb|CA618399.1|CA618399 wl1n.pk0033.d10 wl1n Triticum aestiv... 50 2e-004
gb|CD899333.1|CD899333 G174.111P20F010827 G174 Triticum aes... 50 2e-004
gb|CK207427.1|CK207427 FGAS019049 Triticum aestivum FGAS: L... 48 7e-004
gb|CA648905.1|CA648905 wre1n.pk0131.h9 wre1n Triticum aesti... 44 0.010
gb|AL825729.1|AL825729 AL825729 p:234 Triticum aestivum cDN... 42 0.040
gb|CA642156.1|CA642156 wre1n.pk0053.a12 wre1n Triticum aest... 42 0.040
gb|BG904885.1|BG904885 TaLr1135F01R TaLr1 Triticum aestivum... 40 0.16
gb|BQ743339.1|BQ743339 WHE4102_H01_O02ZS Wheat salt-stresse... 40 0.16
gb|CK163072.1|CK163072 FGAS015687 Triticum aestivum FGAS: L... 40 0.16
>gb|BG605054.1|BG605054 WHE2326_H10_O20ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2326_H10_O20, mRNA sequence
Length = 544
Score = 272 bits (137), Expect = 2e-071
Identities = 245/281 (87%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 343 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 284
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 283 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagcgagtagaac 224
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcagc 242
||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||
Sbjct: 223 cggggcagcacgcagtagagcaccatctggatctgctcctgggacgacagcccattgagg 164
Query: 243 acgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgttg 302
||| ||||| | | ||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct: 163 gtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaagatggtcagcccgttg 104
Query: 303 tagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 103 tagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 63
>gb|BE499632.1|BE499632 WHE0962_C03_F06ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0962_C03_F06, mRNA sequence
Length = 598
Score = 266 bits (134), Expect = 1e-069
Identities = 244/281 (86%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 592 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 533
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 532 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagcgagtagaac 473
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcagc 242
|||||||||||||||||||||||||||||||||||||| || | ||||||||| || ||
Sbjct: 472 cggggcagcacgcagtagagcaccatctggatctgctcntgggacgacagcccattgagg 413
Query: 243 acgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgttg 302
||| ||||| | | ||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct: 412 gtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaagatggtcagcccgttg 353
Query: 303 tagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 352 tagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 312
>gb|CA624181.1|CA624181 wl1n.pk0115.g7 wl1n Triticum aestivum cDNA clone wl1n.pk0115.g7 5'
end, mRNA sequence
Length = 580
Score = 266 bits (134), Expect = 1e-069
Identities = 233/259 (89%), Gaps = 8/259 (3%)
Strand = Plus / Minus
Query: 219 tcctgcggcgacagcccgttcagcacgcccgccttcatcttgtcgaaggcggcgttggtg 278
|||||||| ||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct: 527 tcctgcgg-gacagcccgttgagcac--ccgccttcatcttgt-gaaggcggcgttgt-- 474
Query: 279 ggcgccatgatggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtcc 338
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 473 ggcgccatgatg-tcagcccgttgtagctgtccgtcagctgcgcgttnatctgcgtgtcc 415
Query: 339 acgcgcgtgtcgtgcaacagct-gccggaactcgctgaactgctcgtccttcagcgcctt 397
|||||||||||||||| ||||| || ||||||||||||||| |||||||| ||||||||
Sbjct: 414 acgcgcgtgtcgtgcagcagcttgcttgaactcgctgaactggtcgtccttgagcgcctt 355
Query: 398 gttcacgtccgtcggcggcgccgcgtccgccgcgcccgcgcccgagcccgacgacgacgc 457
||||||||| || || || ||||||||||||||||||||||| || |||||||| |||
Sbjct: 354 gttcacgtctgtgggaggggccgcgtccgccgcgcccgcgccggacgacgacgacgccgc 295
Query: 458 cggccctggcgcggccttc 476
|||||||||||| ||||||
Sbjct: 294 cggccctggcgccgccttc 276
Score = 50.1 bits (25), Expect = 2e-004
Identities = 42/47 (89%), Gaps = 3/47 (6%)
Strand = Plus / Minus
Query: 489 agcagcggtgacg---ccgccaggagcaccaagaggatggcgaggcg 532
||||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct: 233 agcagcggtgacgccgccgccaggagcaccaggagggtggcgaggcg 187
>gb|BQ483872.1|BQ483872 WHE3513_E11_I21ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3513_E11_I21, mRNA sequence
Length = 703
Score = 264 bits (133), Expect = 6e-069
Identities = 244/281 (86%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 613 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 554
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct: 553 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagggagtagaac 494
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcagc 242
|| |||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||
Sbjct: 493 cgtggcagcacgcagtagagcaccatctggatctgctcctgggacgagagcccgttgagg 434
Query: 243 acgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgttg 302
||| ||||| | | ||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct: 433 gtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaagatggtcagcccgttg 374
Query: 303 tagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
||||||||||||||||||||||||||||| || ||||||||
Sbjct: 373 tagctgtccgtcagctgcgcgttgatctgggtctccacgcg 333
>gb|DR737865.1|DR737865 FGAS083082 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1183
Score = 254 bits (128), Expect = 6e-066
Identities = 245/284 (86%)
Strand = Plus / Minus
Query: 60 cccgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcg 119
|||||||| || |||||||||| || || ||||||| | ||| ||||||| ||| |
Sbjct: 678 cccgtggagaccgtgacgttgttgccggagggcttgatcttgtaggtgtaggggccggag 619
Query: 120 tggccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtag 179
||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 618 tggccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagggagtag 559
Query: 180 aaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttc 239
||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 558 aaccgtggcagcacgcagtagagcaccatctggatctgctcctgggacgagagcccgttg 499
Query: 240 agcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccg 299
|| ||| ||||| | | ||||| |||||||| ||||||||| | |||||||||||||
Sbjct: 498 agggtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaagatggtcagcccg 439
Query: 300 ttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 438 ttgtagctgtccgtcagctgcgcgttgatctgggtctccacgcg 395
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacg 32
|||||||||||||||||||||
Sbjct: 732 agcgggaagtccttgctgacg 712
>gb|CN010649.1|CN010649 WHE3874_E04_J08ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3874_E04_J08,
mRNA sequence
Length = 572
Score = 250 bits (126), Expect = 9e-065
Identities = 210/238 (88%)
Strand = Plus / Minus
Query: 106 tgtagggcccgtcgtggccggacccctgcgtgttgaccttgccgctgagggtgccgagca 165
||||||| ||| |||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 554 tgtaggggccggagtggccggacgcctgcgtgctgaccttgccgttgagggtgccgagca 495
Query: 166 tggacaggctgtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcg 225
|||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 494 tggagagggagtagaaccgtggcagcacgcagtagagcaccatctggatctgctcctggg 435
Query: 226 gcgacagcccgttcagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgcca 285
||| |||||||| || ||| ||||| | | ||||| |||||||| ||||||||| |
Sbjct: 434 acgagagcccgttgagggtgccggccttgagcccgtcgatggcggcgtcggtgggcgcga 375
Query: 286 tgatggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 374 agatggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgggtctccacgcg 317
>gb|CK217774.1|CK217774 FGAS029776 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1154
Score = 248 bits (125), Expect = 3e-064
Identities = 242/281 (86%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| ||||||||||||| || || ||||||| | ||| ||||| | ||| ||||
Sbjct: 675 gtggagacgttgacgttgtcgccggagggcttgatcttgtaggtgtagcggccggagtgg 616
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct: 615 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagggagtagaac 556
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcagc 242
|| |||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||
Sbjct: 555 cgtggcagcacgcagtagagcaccatctggatctgctcctgggacgagagcccgttgagg 496
Query: 243 acgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgttg 302
||| ||||| | | ||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct: 495 gtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaagatggtcagcccgttg 436
Query: 303 tagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
||||||||||||||||||||||||||||| || ||||||||
Sbjct: 435 tagctgtccgtcagctgcgcgttgatctgggtctccacgcg 395
>gb|BQ483168.1|BQ483168 WHE3505_D08_G15ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3505_D08_G15, mRNA sequence
Length = 731
Score = 214 bits (108), Expect = 5e-054
Identities = 213/248 (85%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 248 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 189
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 188 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagcgagtagaac 129
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcagc 242
||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||
Sbjct: 128 cggggcagcacgcagtagagcaccatctggatctgctcctgggacgacagcccattgagg 69
Query: 243 acgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgttg 302
||| ||||| | | ||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct: 68 gtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaagatggtcagcccgttg 9
Query: 303 tagctgtc 310
||||||||
Sbjct: 8 tagctgtc 1
>gb|BI480414.1|BI480414 WHE2902_H01_O02ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2902_H01_O02, mRNA
sequence
Length = 582
Score = 194 bits (98), Expect = 5e-048
Identities = 217/254 (85%), Gaps = 2/254 (0%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 253 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 194
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 193 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagcgagtagaac 134
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcagc 242
||||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||
Sbjct: 133 cggggcagcacgcagtagagcaccatctggatctgctcctgggacgacagccc-atgagg 75
Query: 243 acgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcc-cgtt 301
||| ||||| | | ||||| |||||||| ||||||||| | ||||||||||| ||||
Sbjct: 74 gtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaagatggtcagcctcgtt 15
Query: 302 gtagctgtccgtca 315
||||||||||||||
Sbjct: 14 gtagctgtccgtca 1
>gb|CK195906.1|CK195906 FGAS004352 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 858
Score = 161 bits (81), Expect = 6e-038
Identities = 196/233 (84%), Gaps = 1/233 (0%)
Strand = Plus / Minus
Query: 109 agggcccgtcgtggccggacccctgcgtgttgaccttgccgctga-gggtgccgagcatg 167
|||||||| ||| |||||| | |||||| | ||||||||| ||| ||||||||||||||
Sbjct: 685 agggcccggagtgcccggacgcttgcgtgctaaccttgccgttgaagggtgccgagcatg 626
Query: 168 gacaggctgtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggc 227
|| ||| ||||| ||| |||||||||||||||||||||||| ||| | ||||| | |
Sbjct: 625 gagagggagtagacccgtggcagcacgcagtagagcaccatccagatacggtcctgggac 566
Query: 228 gacagcccgttcagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatg 287
|| |||||||| || ||| ||||| | | ||||| |||||||| ||||||||| | |
Sbjct: 565 gagagcccgttgagggtgccggccttgagcccgtcgatggcggcgtcggtgggcgcgaag 506
Query: 288 atggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 505 atggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgggtctccac 453
>gb|BQ838433.1|BQ838433 WHE2910_D05_G10ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2910_D05_G10, mRNA
sequence
Length = 393
Score = 157 bits (79), Expect = 1e-036
Identities = 139/159 (87%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||| | | ||| ||||||| ||| ||||
Sbjct: 159 gtggagacgttgacgttgttgccggagggcttgctcttgtaggtgtaggggccggagtgg 100
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct: 99 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagggagtagaac 40
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcc 221
|| ||||||||||||||||||||||||||||||||||||
Sbjct: 39 cgtggcagcacgcagtagagcaccatctggatctgctcc 1
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacggggctgcccagcagcat 49
||||||||||||||||||||| |||||| || |||||
Sbjct: 216 agcgggaagtccttgctgacgacgctgccgaggagcat 179
>gb|AL822677.1|AL822677 AL822677 p:335 Triticum aestivum cDNA clone A04_p335_plate_1, mRNA
sequence
Length = 373
Score = 153 bits (77), Expect = 2e-035
Identities = 140/161 (86%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 165 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 106
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct: 105 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagggagtagaac 46
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctg 223
|| |||||||||||||||||||| ||||||||||||||||
Sbjct: 45 cgtggcagcacgcagtagagcacattctggatctgctcctg 5
Score = 46.1 bits (23), Expect = 0.003
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 8 ggcgagcgggaagtccttgctgacggggctgcccagcagcat 49
||| ||||||||||||||||||||| |||||| || |||||
Sbjct: 226 ggcnagcgggaagtccttgctgacgacgctgccgaggagcat 185
>gb|BU100984.1|BU100984 WHE3360_D06_G12ZS Chinese Spring aluminum-stressed root tip cDNA
library Triticum aestivum cDNA clone WHE3360_D06_G12,
mRNA sequence
Length = 545
Score = 153 bits (77), Expect = 2e-035
Identities = 140/161 (86%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 210 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 151
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 150 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagcgagtagaag 91
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctg 223
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 90 cgggggagcacgcagtagagcaccatctggatctgctcctg 50
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacggggctgcccagcagcat 49
||||||||||||||||||||| |||||| || |||||
Sbjct: 267 agcgggaagtccttgctgacgacgctgccgaggagcat 230
>gb|BU101081.1|BU101081 WHE3361_D06_H11ZS Chinese Spring aluminum-stressed root tip cDNA
library Triticum aestivum cDNA clone WHE3361_D06_H11,
mRNA sequence
Length = 581
Score = 153 bits (77), Expect = 2e-035
Identities = 140/161 (86%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 212 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 153
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 152 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagcgagtagaag 93
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctg 223
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 92 cgggggagcacgcagtagagcaccatctggatctgctcctg 52
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacggggctgcccagcagcat 49
||||||||||||||||||||| |||||| || |||||
Sbjct: 269 agcgggaagtccttgctgacgacgctgccgaggagcat 232
>gb|CA727436.1|CA727436 wdi1c.pk001.o7 wdi1c Triticum aestivum cDNA clone wdi1c.pk001.o7 5'
end, mRNA sequence
Length = 384
Score = 141 bits (71), Expect = 6e-032
Identities = 174/207 (84%), Gaps = 2/207 (0%)
Strand = Plus / Minus
Query: 139 tgaccttgccgctgagggtgccgagcatggacaggctgtagaaccgg-ggcagcacgcag 197
||||||||||| ||||||||||||||||||| ||| |||| || | ||||||| ||||
Sbjct: 244 tgaccttgccgttgagggtgccgagcatggagagggattagaccccgtggcagcangcag 185
Query: 198 tagagcaccatctggatctgctcctgcggcgacagcccgttcagcacgcccgccttcatc 257
||||||||||| |||||||||||||| | ||| |||||||| || ||| ||||| | |
Sbjct: 184 tagagcaccatttggatctgctcctgggacgagagcccgttgagggtgccggccttgagc 125
Query: 258 ttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgttgtagctgtccgtcagc 317
||||| |||||||| ||||||||| | | |||||||||||||||||||| |||||| |
Sbjct: 124 ccgtcgatggcggcgtcggtgggcgcgangntggtcagcccgttgtagctgnccgtcaac 65
Query: 318 tg-cgcgttgatctgcgtgtccacgcg 343
|| | |||||||||| || ||||||||
Sbjct: 64 tgccccgttgatctgggtctccacgcg 38
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 302 gtagctgtccgtcagctgcgcgttga 327
||||||||||||||||||||||||||
Sbjct: 26 gtagctgtccgtcagctgcgcgttga 1
>gb|BG262892.1|BG262892 WHE0948_E10_J20ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0948_E10_J20, mRNA sequence
Length = 477
Score = 105 bits (53), Expect = 3e-021
Identities = 116/137 (84%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 137 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 78
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| ||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 77 ccggacgcctgcgtgctgaccttgccgttgagggtgccgagcatggagagcgagtagaag 18
Query: 183 cggggcagcacgcagta 199
||||| |||||||||||
Sbjct: 17 cgggggagcacgcagta 1
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacggggctgcccagcagcat 49
||||||||||||||||||||| |||||| || |||||
Sbjct: 194 agcgggaagtccttgctgacgacgctgccgaggagcat 157
>gb|BG262506.1|BG262506 WHE0936_G08_N16ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0936_G08_N16, mRNA sequence
Length = 129
Score = 85.7 bits (43), Expect = 3e-015
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 293 cagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 129 cagcccgttgtagctgtcagtcagctgcgcgttgatctgcgtctccacgcg 79
>gb|CA732852.1|CA732852 wlp1c.pk006.o23 wlp1c Triticum aestivum cDNA clone wlp1c.pk006.o23
5' end, mRNA sequence
Length = 447
Score = 71.9 bits (36), Expect = 4e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 268 cggcgttggtgggcgccatgatggtcagcccgttgtagctgtccgtca 315
|||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 390 cggcgtcggtgggcgctaagatggtcagcccgttgtagctgtccgtca 343
>gb|CA623111.1|CA623111 wl1n.pk0090.g12 wl1n Triticum aestivum cDNA clone wl1n.pk0090.g12
5' end, mRNA sequence
Length = 388
Score = 67.9 bits (34), Expect = 7e-010
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 392 cgccttgttcacgtccgtcggcggcgccgcgtccgccgcgcccgcgcccga-gcccgacg 450
||||||||||||| | || || || |||||| ||||||| |||||||| || | ||||||
Sbjct: 322 cgccttgttcacgnctgtgggaggggccgcgnccgccgcncccgcgccggangaccgacg 263
Query: 451 acgacgccggccctggcgc 469
||| |||||||||||||||
Sbjct: 262 acgccgccggccctggcgc 244
Score = 44.1 bits (22), Expect = 0.010
Identities = 41/47 (87%), Gaps = 3/47 (6%)
Strand = Plus / Minus
Query: 489 agcagcggtgacgccgcca---ggagcaccaagaggatggcgaggcg 532
||||||||||||||| ||| ||||||||| |||| ||||||||||
Sbjct: 191 agcagcggtgacgccnccaccaggagcaccaggagggtggcgaggcg 145
>gb|DR737864.1|DR737864 FGAS083081 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1121
Score = 58.0 bits (29), Expect = 7e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 287 gatggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||| ||||||||||||||||| | |||||||||||||||||| || ||||||||
Sbjct: 452 gatgatcagcccgttgtagctggcgtacagctgcgcgttgatctgggtctccacgcg 396
>gb|CA618399.1|CA618399 wl1n.pk0033.d10 wl1n Triticum aestivum cDNA clone wl1n.pk0033.d10
5' end, mRNA sequence
Length = 168
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 500 cgccgccaggagcaccaagaggatggcgaggcg 532
||||||||||||||||| |||| ||||||||||
Sbjct: 93 cgccgccaggagcaccaggagggtggcgaggcg 61
>gb|CD899333.1|CD899333 G174.111P20F010827 G174 Triticum aestivum cDNA clone G174111P20,
mRNA sequence
Length = 489
Score = 50.1 bits (25), Expect = 2e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| || || ||||||| | ||| ||||||| ||| ||||
Sbjct: 91 gtggagacgttgacgttgttgccggagggcttgatcttgtaggtgtaggggccggagtgg 32
Query: 123 ccggacccctgcgtgttgacc 143
|||||| |||||||| |||||
Sbjct: 31 ccggacgcctgcgtgctgacc 11
>gb|CK207427.1|CK207427 FGAS019049 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1116
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 182 ccggggcagcacgcagtagagcaccatctggatctg 217
||||| |||||||||| ||||||||||| |||||||
Sbjct: 15 ccgggtcagcacgcaggagagcaccatccggatctg 50
>gb|CA648905.1|CA648905 wre1n.pk0131.h9 wre1n Triticum aestivum cDNA clone wre1n.pk0131.h9
5' end, mRNA sequence
Length = 154
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacggggctgcccagcagcat 49
||||||||||||||||||||| |||||| || |||||
Sbjct: 112 agcgggaagtccttgctgacgacgctgccgaggagcat 75
>gb|AL825729.1|AL825729 AL825729 p:234 Triticum aestivum cDNA clone C11_p234_plate_15,
mRNA sequence
Length = 145
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacg 32
|||||||||||||||||||||
Sbjct: 61 agcgggaagtccttgctgacg 41
>gb|CA642156.1|CA642156 wre1n.pk0053.a12 wre1n Triticum aestivum cDNA clone
wre1n.pk0053.a12 5' end, mRNA sequence
Length = 488
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 agcgggaagtccttgctgacg 32
|||||||||||||||||||||
Sbjct: 28 agcgggaagtccttgctgacg 8
>gb|BG904885.1|BG904885 TaLr1135F01R TaLr1 Triticum aestivum cDNA clone TaLr1135F01 5',
mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 423 tccgccgcgcccgcgcccgagccc 446
||||||||||||||||||| ||||
Sbjct: 87 tccgccgcgcccgcgcccgcgccc 64
>gb|BQ743339.1|BQ743339 WHE4102_H01_O02ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4102_H01_O02, mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 423 tccgccgcgcccgcgcccgagccc 446
||||||||||||||||||| ||||
Sbjct: 61 tccgccgcgcccgcgcccgcgccc 38
>gb|CK163072.1|CK163072 FGAS015687 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1072
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 421 cgtccgccgcgcccgcgccc 440
||||||||||||||||||||
Sbjct: 24 cgtccgccgcgcccgcgccc 43
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 201,398
Number of Sequences: 636343
Number of extensions: 201398
Number of successful extensions: 63064
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62975
Number of HSP's gapped (non-prelim): 71
length of query: 560
length of database: 367,240,239
effective HSP length: 19
effective length of query: 541
effective length of database: 355,149,722
effective search space: 192135999602
effective search space used: 192135999602
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)