BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7987759.3.1
(658 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB307508.1|CB307508 HFIG493 Hessian fly infested cDNA li... 127 1e-027
gb|CK204735.1|CK204735 FGAS013271 Triticum aestivum FGAS: L... 127 1e-027
gb|CK205087.1|CK205087 FGAS013624 Triticum aestivum FGAS: L... 127 1e-027
gb|BE490233.1|BE490233 WHE0366_H10_P20ZS Wheat cold-stresse... 125 4e-027
gb|BQ839184.1|BQ839184 WHE4163_C09_E17ZS Wheat CS whole pla... 123 2e-026
gb|BE414993.1|BE414993 MWL010.A06F990625 ITEC MWL Wheat Roo... 115 4e-024
gb|BQ578376.1|BQ578376 WHE0302_B09_C18ZS Wheat unstressed s... 109 2e-022
gb|AL822821.1|AL822821 AL822821 p:335 Triticum aestivum cDN... 90 2e-016
gb|BJ279395.1|BJ279395 BJ279395 Y. Ogihara unpublished cDNA... 86 4e-015
gb|CA711702.1|CA711702 wdk2c.pk014.h15 wdk2c Triticum aesti... 60 2e-007
gb|BE406921.1|BE406921 WHE0433_g09_m17zS Wheat etiolated se... 56 3e-006
gb|AL825266.1|AL825266 AL825266 p:335 Triticum aestivum cDN... 56 3e-006
gb|CK201053.1|CK201053 FGAS009572 Triticum aestivum FGAS: L... 56 3e-006
gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase ... 56 3e-006
gb|CA626923.1|CA626923 wl1n.pk0145.d6 wl1n Triticum aestivu... 54 1e-005
gb|BE438369.1|BE438369 WHE0020.C01F000701 ITEC WHE Wheat En... 48 8e-004
gb|AW448347.1|AW448347 BRY_596 BRY Triticum aestivum cDNA c... 48 8e-004
gb|BJ236504.1|BJ236504 BJ236504 Y. Ogihara unpublished cDNA... 48 8e-004
gb|BQ609206.1|BQ609206 BRY_5130 wheat EST endosperm library... 48 8e-004
gb|BQ609731.1|BQ609731 BRY_596 wheat EST endosperm library ... 48 8e-004
gb|BQ167446.1|BQ167446 WHE0064_H07_O14ZK Cheyenne wheat end... 48 8e-004
gb|CD885973.1|CD885973 G118.101A01F010601 G118 Triticum aes... 48 8e-004
gb|CD890148.1|CD890148 G118.113P13F010716 G118 Triticum aes... 48 8e-004
gb|CN012140.1|CN012140 WHE3893_A03_B05ZS Wheat Fusarium gra... 48 8e-004
gb|BM135730.1|BM135730 WHE2623_D07_H13ZS Wheat Fusarium gra... 42 0.047
gb|AL825088.1|AL825088 AL825088 p:234 Triticum aestivum cDN... 42 0.047
gb|CA599207.1|CA599207 wyr1c.pk002.e15 wyr1c Triticum aesti... 42 0.047
gb|CD875174.1|CD875174 AZO3.104H15F010930 AZO3 Triticum aes... 42 0.047
gb|CD896262.1|CD896262 G174.102E19F010822 G174 Triticum aes... 42 0.047
gb|CK199380.1|CK199380 FGAS007876 Triticum aestivum FGAS: L... 42 0.047
gb|CV766560.1|CV766560 FGAS060947 Triticum aestivum FGAS: L... 42 0.047
gb|CV771798.1|CV771798 FGAS066191 Triticum aestivum FGAS: L... 42 0.047
gb|CV771886.1|CV771886 FGAS066279 Triticum aestivum FGAS: L... 42 0.047
gb|CV777204.1|CV777204 FGAS071609 Triticum aestivum FGAS: L... 42 0.047
gb|CV782698.1|CV782698 FGAS077111 Triticum aestivum FGAS: L... 42 0.047
gb|BF473672.1|BF473672 WHE0931_A06_B11ZS Wheat 5-15 DAP spi... 40 0.19
gb|BI479793.1|BI479793 WHE3452_B08_C16ZS Wheat pre-anthesis... 40 0.19
gb|BJ245375.1|BJ245375 BJ245375 Y. Ogihara unpublished cDNA... 40 0.19
gb|CD907712.1|CD907712 G468.107N02F010814 G468 Triticum aes... 40 0.19
gb|CK203893.1|CK203893 FGAS012428 Triticum aestivum FGAS: L... 40 0.19
gb|CK204216.1|CK204216 FGAS012752 Triticum aestivum FGAS: L... 40 0.19
gb|DQ157836.1| Triticum turgidum strain Langdon chromosome ... 40 0.19
gb|DQ157840.1| Triticum turgidum strain Langdon chromosome ... 40 0.19
>gb|CB307508.1|CB307508 HFIG493 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 646
Score = 127 bits (64), Expect = 1e-027
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 116 gatgccgagctccagctgtggaaccacaccttcggctacgtcaagtccatggcgctcaag 175
|||||| ||||| |||| ||| | |||||| ||||||| |||||||||||||||||||||
Sbjct: 119 gatgcccagctcgagctctggcatcacaccctcggctatgtcaagtccatggcgctcaag 178
Query: 176 gccgcgctcgacctcggcatacccgatgccatccaccagcacggcggctcggctaccatc 235
|||| || || |||||||| |||| |||||||||| || |||||| | || ||| ||
Sbjct: 179 tccgccctggaactcggcatcgccgacgccatccaccgccaaggcggcgccgccaccctc 238
Query: 236 ccacagatagtcaccaggatcacgctccacccgtccaagacaccatgcctgcggcgcctc 295
| ||||| | | ||| | |||||||||||||||||||| | |||||||| ||||||
Sbjct: 239 tcccagattgccgccacggccacgctccacccgtccaagatctcctgcctgcgccgcctc 298
Query: 296 atgcgcgtgctcaccgtcaccggcgtcttcgg 327
||||| |||||||||||| | |||||||||||
Sbjct: 299 atgcgtgtgctcaccgtctcaggcgtcttcgg 330
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctccttgtcg 410
||||||| |||| |||||||||||||||||||| ||||
Sbjct: 370 cgtctacgcgctgacgccggcgtcccgtctcctcgtcg 407
>gb|CK204735.1|CK204735 FGAS013271 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 863
Score = 127 bits (64), Expect = 1e-027
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 116 gatgccgagctccagctgtggaaccacaccttcggctacgtcaagtccatggcgctcaag 175
|||||| ||||| |||| ||| | |||||| ||||||| |||||||||||||||||||||
Sbjct: 223 gatgcccagctcgagctctggcatcacaccctcggctatgtcaagtccatggcgctcaag 282
Query: 176 gccgcgctcgacctcggcatacccgatgccatccaccagcacggcggctcggctaccatc 235
|||| || || |||||||| |||| |||||||||| || |||||| | || ||| ||
Sbjct: 283 tccgccctggaactcggcatcgccgacgccatccaccgccaaggcggcgccgccaccctc 342
Query: 236 ccacagatagtcaccaggatcacgctccacccgtccaagacaccatgcctgcggcgcctc 295
| ||||| | | ||| | |||||||||||||||||||| | |||||||| ||||||
Sbjct: 343 tcccagattgccgccacggccacgctccacccgtccaagatctcctgcctgcgccgcctc 402
Query: 296 atgcgcgtgctcaccgtcaccggcgtcttcgg 327
||||| |||||||||||| | |||||||||||
Sbjct: 403 atgcgtgtgctcaccgtctcaggcgtcttcgg 434
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctccttgtcg 410
||||||| |||| |||||||||||||||||||| ||||
Sbjct: 474 cgtctacgcgctgacgccggcgtcccgtctcctcgtcg 511
>gb|CK205087.1|CK205087 FGAS013624 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 865
Score = 127 bits (64), Expect = 1e-027
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 116 gatgccgagctccagctgtggaaccacaccttcggctacgtcaagtccatggcgctcaag 175
|||||| ||||| |||| ||| | |||||| ||||||| |||||||||||||||||||||
Sbjct: 225 gatgcccagctcgagctctggcatcacaccctcggctatgtcaagtccatggcgctcaag 284
Query: 176 gccgcgctcgacctcggcatacccgatgccatccaccagcacggcggctcggctaccatc 235
|||| || || |||||||| |||| |||||||||| || |||||| | || ||| ||
Sbjct: 285 tccgccctggaactcggcatcgccgacgccatccaccgccaaggcggcgccgccaccctc 344
Query: 236 ccacagatagtcaccaggatcacgctccacccgtccaagacaccatgcctgcggcgcctc 295
| ||||| | | ||| | |||||||||||||||||||| | |||||||| ||||||
Sbjct: 345 tcccagattgccgccacggccacgctccacccgtccaagatctcctgcctgcgccgcctc 404
Query: 296 atgcgcgtgctcaccgtcaccggcgtcttcgg 327
||||| |||||||||||| | |||||||||||
Sbjct: 405 atgcgtgtgctcaccgtctcaggcgtcttcgg 436
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctccttgtcg 410
||||||| |||| |||||||||||||||||||| ||||
Sbjct: 476 cgtctacgcgctgacgccggcgtcccgtctcctcgtcg 513
>gb|BE490233.1|BE490233 WHE0366_H10_P20ZS Wheat cold-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0366_H10_P20, mRNA
sequence
Length = 491
Score = 125 bits (63), Expect = 4e-027
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 151 ctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatcca 210
|||| |||||||||||||||||||| |||| ||||||||| || | |||| ||||||||
Sbjct: 88 ctacatcaagtccatggcgctcaagtccgccctcgacctccgcctcgccgacgccatcca 147
Query: 211 ccagcacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtc 270
||| ||||||||| || ||| |||| ||||||| | ||||| ||||| | ||||||||
Sbjct: 148 ccaccacggcggcggcgccaccctcccccagatagccgccagggtcacggtgcacccgtc 207
Query: 271 caagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttc 325
||||| || |||||||| |||||||||||| |||||||||| | |||||||||
Sbjct: 208 caagatcccctgcctgcgccgcctcatgcgcacgctcaccgtctcgggcgtcttc 262
>gb|BQ839184.1|BQ839184 WHE4163_C09_E17ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4163_C09_E17, mRNA sequence
Length = 545
Score = 123 bits (62), Expect = 2e-026
Identities = 176/214 (82%)
Strand = Plus / Plus
Query: 112 gctggatgccgagctccagctgtggaaccacaccttcggctacgtcaagtccatggcgct 171
|||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct: 27 gctggatgcccagctcgagctttggcaccacaccttcagctacgtcaagtccatggcgct 86
Query: 172 caaggccgcgctcgacctcggcatacccgatgccatccaccagcacggcggctcggctac 231
|||| | || || ||||||||||| | || |||||||||| || |||||| | |||||
Sbjct: 87 caagtctgccctggacctcggcattgcggacgccatccaccgccaaggcggcgccgctac 146
Query: 232 catcccacagatagtcaccaggatcacgctccacccgtccaagacaccatgcctgcggcg 291
| || | ||||| | | ||| | ||||||||||||| |||||| | |||||||| ||
Sbjct: 147 cctctcccagattgccgccacggccacgctccacccgaccaagatctcctgcctgcgccg 206
Query: 292 cctcatgcgcgtgctcaccgtcaccggcgtcttc 325
||||||||| |||||| |||| ||||| |||||
Sbjct: 207 cctcatgcgtgtgctcgtcgtctccggcatcttc 240
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||| ||||||||||||||||||||
Sbjct: 282 cgtctacgcgctgacgccggcgtcccgtctcct 314
>gb|BE414993.1|BE414993 MWL010.A06F990625 ITEC MWL Wheat Root Library Triticum aestivum
cDNA clone MWL010.A06, mRNA sequence
Length = 410
Score = 115 bits (58), Expect = 4e-024
Identities = 155/188 (82%)
Strand = Plus / Plus
Query: 140 cacaccttcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcataccc 199
|||||| ||||||| ||||||||||||||||||||| |||| || || |||||||| ||
Sbjct: 6 cacaccctcggctatgtcaagtccatggcgctcaagtccgccctggaactcggcatcgcc 65
Query: 200 gatgccatccaccagcacggcggctcggctaccatcccacagatagtcaccaggatcacg 259
|| |||||||||| || ||||| | || ||| || | ||||| | | ||| | ||||
Sbjct: 66 gacgccatccaccgncaaggcggngccgccaccctctcccagattgccgccacgggcacg 125
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| | |||||||| ||||||||||| |||||||||||| | |||
Sbjct: 126 ctccacccgtccaagatctcctgcctgcgccgcctcatgcgtgtgctcaccgtctcaggc 185
Query: 320 gtcttcgg 327
||||||||
Sbjct: 186 gtcttcgg 193
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||| ||||||||||||||||||||
Sbjct: 233 cgtctacgcgctgacgccggcgtcccgtctcct 265
>gb|BQ578376.1|BQ578376 WHE0302_B09_C18ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0302_B09_C18, mRNA
sequence
Length = 684
Score = 109 bits (55), Expect = 2e-022
Identities = 145/175 (82%)
Strand = Plus / Plus
Query: 151 ctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatcca 210
|||| |||||||||||||||||||| | || || |||||| || | |||| ||||||||
Sbjct: 122 ctacatcaagtccatggcgctcaagtcggcccttgacctccgcctcgccgacgccatcca 181
Query: 211 ccagcacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtc 270
||| ||||||||| | || ||| |||| ||||||| | ||||| || || | ||||||||
Sbjct: 182 ccaccacggcggcgccgccaccctccctcagatagccgccagggtcgcggtgcacccgtc 241
Query: 271 caagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttc 325
||||| || |||||||| |||||||||||| |||||||||| | |||||||||
Sbjct: 242 caagatcccctgcctgcgccgcctcatgcgcacgctcaccgtctcgggcgtcttc 296
>gb|AL822821.1|AL822821 AL822821 p:335 Triticum aestivum cDNA clone A03_p335_plate_3, mRNA
sequence
Length = 512
Score = 89.7 bits (45), Expect = 2e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 177 ccgcgctcgacctcggcatacccgatgccatccaccagcacggcggctcggctaccatcc 236
|||| ||||||||| || | |||| ||||||||||| ||||||||| || ||| |||
Sbjct: 127 ccgccctcgacctccgcctcgccgacgccatccaccaccacggcggcggcgccaccctcc 186
Query: 237 cacagatagtcaccaggatcacgctccacccgtccaagacaccatgcctgcggcgcctca 296
| ||||||| | ||||| ||||| | ||||||||||||| || |||||||| |||||||
Sbjct: 187 cccagatagccgccagggtcacggtgcacccgtccaagatcccctgcctgcgccgcctca 246
Query: 297 tgcgcgtgctcaccgtcaccggcgtcttc 325
||||| |||||||||| | |||||||||
Sbjct: 247 tgcgcacgctcaccgtctcgggcgtcttc 275
>gb|BJ279395.1|BJ279395 BJ279395 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr2m04 5', mRNA sequence
Length = 573
Score = 85.7 bits (43), Expect = 4e-015
Identities = 142/175 (81%)
Strand = Plus / Plus
Query: 151 ctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatcca 210
|||| |||||||||||||||||||| | || || |||||| || | | || ||||||||
Sbjct: 80 ctacatcaagtccatggcgctcaagtcggccctggacctccgcctcgctgacgccatcca 139
Query: 211 ccagcacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtc 270
||| || |||||| | || ||| |||| |||||| | ||||| || || | ||||||||
Sbjct: 140 ccaccatggcggcgccgccaccctcccccagatactgtccagggtcgcggtgcacccgtc 199
Query: 271 caagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttc 325
||||| || |||||||| |||||||||||| |||||||||| | |||||||||
Sbjct: 200 caagatcccctgcctgcgccgcctcatgcgcacgctcaccgtctcgggcgtcttc 254
>gb|CA711702.1|CA711702 wdk2c.pk014.h15 wdk2c Triticum aestivum cDNA clone wdk2c.pk014.h15
5' end, mRNA sequence
Length = 465
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgcca 206
|||||||||||||||||||| |||||||| ||| | ||||||||||| |||| ||||
Sbjct: 140 tcggctacgtcaagtccatgtcgctcaagtgcgccgtggacctcggcatcaccgacgcca 199
Query: 207 tccacc 212
||||||
Sbjct: 200 tccacc 205
>gb|BE406921.1|BE406921 WHE0433_g09_m17zS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0433_g09_m17, mRNA
sequence
Length = 454
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 282 gcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttc 325
||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 145 gcctgcgccgcctcatgcgcgtgctcaccgtatcgggcgtcttc 188
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 139 ccacaccttcggctacgtcaagtccatggcgctcaa 174
|||| ||| ||||| |||||||||||||||||||||
Sbjct: 2 ccacgcctacggcttcgtcaagtccatggcgctcaa 37
>gb|AL825266.1|AL825266 AL825266 p:335 Triticum aestivum cDNA clone E09_p335_plate_7, mRNA
sequence
Length = 310
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 282 gcctgcggcgcctcatgcgcgtgctcaccgtc 313
||||||| ||||||||||||||||||||||||
Sbjct: 252 gcctgcgccgcctcatgcgcgtgctcaccgtc 283
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 148 cggctacgtcaagtccatggcgctcaa 174
||||| |||||||||||||||||||||
Sbjct: 118 cggcttcgtcaagtccatggcgctcaa 144
>gb|CK201053.1|CK201053 FGAS009572 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 812
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 282 gcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttc 325
||||||| || ||||||||||||||||||||| | |||||||||
Sbjct: 365 gcctgcgccgtctcatgcgcgtgctcaccgtctcgggcgtcttc 408
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 139 ccacaccttcggctacgtcaagtccatggcgctcaa 174
|||| ||| ||||| |||||||||||||||||||||
Sbjct: 222 ccacgcctacggcttcgtcaagtccatggcgctcaa 257
>gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase mRNA, complete cds
Length = 1458
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 282 gcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttc 325
||||||| || ||||||||||||||||||||| | |||||||||
Sbjct: 266 gcctgcgccgtctcatgcgcgtgctcaccgtctcgggcgtcttc 309
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 139 ccacaccttcggctacgtcaagtccatggcgctcaa 174
|||| ||| ||||| |||||||||||||||||||||
Sbjct: 123 ccacgcctacggcttcgtcaagtccatggcgctcaa 158
>gb|CA626923.1|CA626923 wl1n.pk0145.d6 wl1n Triticum aestivum cDNA clone wl1n.pk0145.d6 5'
end, mRNA sequence
Length = 283
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 149 ggctacgtcaagtccatggcgctcaag 175
|||||||||||||||||||||||||||
Sbjct: 80 ggctacgtcaagtccatggcgctcaag 106
>gb|BE438369.1|BE438369 WHE0020.C01F000701 ITEC WHE Wheat Endosperm Library Triticum
aestivum cDNA clone WHE0020.C01, mRNA sequence
Length = 400
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 57 agctctgggacctcaccttcggctacctcaaatccatggcgctc 100
>gb|AW448347.1|AW448347 BRY_596 BRY Triticum aestivum cDNA clone P39-4J, mRNA sequence
Length = 716
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 81 agctctgggacctcaccttcggctacctcaaatccatggcgctc 124
>gb|BJ236504.1|BJ236504 BJ236504 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe21p03 5', mRNA sequence
Length = 650
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 82 agctctgggacctcaccttcggctacctcaaatccatggcgctc 125
>gb|BQ609206.1|BQ609206 BRY_5130 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 591
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 72 agctctgggacctcaccttcggctacctcaaatccatggcgctc 115
>gb|BQ609731.1|BQ609731 BRY_596 wheat EST endosperm library Triticum aestivum cDNA 5', mRNA
sequence
Length = 716
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 81 agctctgggacctcaccttcggctacctcaaatccatggcgctc 124
>gb|BQ167446.1|BQ167446 WHE0064_H07_O14ZK Cheyenne wheat endosperm cDNA library Triticum
aestivum cDNA clone WHE0064_H07_O14, mRNA sequence
Length = 622
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 73 agctctgggacctcaccttcggctacctcaaatccatggcgctc 116
>gb|CD885973.1|CD885973 G118.101A01F010601 G118 Triticum aestivum cDNA clone G118101A01,
mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 81 agctctgggacctcaccttcggctacctcaaatccatggcgctc 124
>gb|CD890148.1|CD890148 G118.113P13F010716 G118 Triticum aestivum cDNA clone G118113P13,
mRNA sequence
Length = 653
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 72 agctctgggacctcaccttcggctacctcaaatccatggcgctc 115
>gb|CN012140.1|CN012140 WHE3893_A03_B05ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3893_A03_B05,
mRNA sequence
Length = 592
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 129 agctgtggaaccacaccttcggctacgtcaagtccatggcgctc 172
|||| ||| ||| ||||||||||||| |||| ||||||||||||
Sbjct: 76 agctctgggacctcaccttcggctacctcaaatccatggcgctc 119
>gb|BM135730.1|BM135730 WHE2623_D07_H13ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2623_D07_H13,
mRNA sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 158 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 206
>gb|AL825088.1|AL825088 AL825088 p:234 Triticum aestivum cDNA clone H02_p234_plate_12, mRNA
sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.047
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 290 cgcctcatgcgcgtgctcacc 310
|||||||||||||||||||||
Sbjct: 226 cgcctcatgcgcgtgctcacc 246
>gb|CA599207.1|CA599207 wyr1c.pk002.e15 wyr1c Triticum aestivum cDNA clone wyr1c.pk002.e15
5' end, mRNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 125 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 173
>gb|CD875174.1|CD875174 AZO3.104H15F010930 AZO3 Triticum aestivum cDNA clone AZO3104H15,
mRNA sequence
Length = 642
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 157 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 205
>gb|CD896262.1|CD896262 G174.102E19F010822 G174 Triticum aestivum cDNA clone G174102E19,
mRNA sequence
Length = 595
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 114 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 162
>gb|CK199380.1|CK199380 FGAS007876 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 855
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 265 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 313
>gb|CV766560.1|CV766560 FGAS060947 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 249 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 297
>gb|CV771798.1|CV771798 FGAS066191 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 848
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 253 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 301
>gb|CV771886.1|CV771886 FGAS066279 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 882
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 261 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 309
>gb|CV777204.1|CV777204 FGAS071609 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 856
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 183 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 231
>gb|CV782698.1|CV782698 FGAS077111 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 861
Score = 42.1 bits (21), Expect = 0.047
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 147 tcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcat 195
|||||||||||||||||| | |||||||| ||| | |||||||||||
Sbjct: 249 tcggctacgtcaagtccacgtcgctcaagtgcgccgtggacctcggcat 297
>gb|BF473672.1|BF473672 WHE0931_A06_B11ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0931_A06_B11, mRNA sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 145 cttcggctacgtcaagtccatggcgctc 172
||||| |||| |||||||||||||||||
Sbjct: 19 cttcgtctacatcaagtccatggcgctc 46
>gb|BI479793.1|BI479793 WHE3452_B08_C16ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3452_B08_C16, mRNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 145 cttcggctacgtcaagtccatggcgctc 172
||||| |||| |||||||||||||||||
Sbjct: 54 cttcgtctacatcaagtccatggcgctc 81
>gb|BJ245375.1|BJ245375 BJ245375 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19e17 5', mRNA sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 145 cttcggctacgtcaagtccatggcgctc 172
||||| |||| |||||||||||||||||
Sbjct: 77 cttcgtctacatcaagtccatggcgctc 104
>gb|CD907712.1|CD907712 G468.107N02F010814 G468 Triticum aestivum cDNA clone G468107N02,
mRNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 300 gcgtgctcaccgtcaccggc 319
||||||||||||||||||||
Sbjct: 517 gcgtgctcaccgtcaccggc 536
>gb|CK203893.1|CK203893 FGAS012428 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 857
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcacc 310
||||| ||||||||||||||||||
Sbjct: 347 cggcggctcatgcgcgtgctcacc 370
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 145 cttcggctacgtcaagtccatggcgctc 172
||||| || |||||||||||||||||||
Sbjct: 205 cttcgccttcgtcaagtccatggcgctc 232
>gb|CK204216.1|CK204216 FGAS012752 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcacc 310
||||| ||||||||||||||||||
Sbjct: 347 cggcggctcatgcgcgtgctcacc 370
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 145 cttcggctacgtcaagtccatggcgctc 172
||||| || |||||||||||||||||||
Sbjct: 205 cttcgccttcgtcaagtccatggcgctc 232
>gb|DQ157836.1| Triticum turgidum strain Langdon chromosome 5 clone BAC 239E17 map 5BL,
WORKING DRAFT SEQUENCE, 7 unordered pieces
Length = 166253
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 341 cacgatgacgggggcggctg 360
||||||||||||||||||||
Sbjct: 37824 cacgatgacgggggcggctg 37805
>gb|DQ157840.1| Triticum turgidum strain Langdon chromosome 5 clone BAC 1180D24 map
5BL, WORKING DRAFT SEQUENCE, 10 ordered pieces
Length = 122739
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 341 cacgatgacgggggcggctg 360
||||||||||||||||||||
Sbjct: 73191 cacgatgacgggggcggctg 73172
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 341 cacgatgacgggggcggctg 360
||||||||||||||||||||
Sbjct: 67351 cacgatgacgggggcggctg 67332
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 341 cacgatgacgggggcggctg 360
||||||||||||||||||||
Sbjct: 64869 cacgatgacgggggcggctg 64850
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181,066
Number of Sequences: 636343
Number of extensions: 181066
Number of successful extensions: 50440
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50313
Number of HSP's gapped (non-prelim): 115
length of query: 658
length of database: 367,240,239
effective HSP length: 19
effective length of query: 639
effective length of database: 355,149,722
effective search space: 226940672358
effective search space used: 226940672358
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)