BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB307577.1|CB307577 HFIG562 Hessian fly infested cDNA li... 607 e-172
gb|BE470666.1|BE470666 WHE0262_G04_G04ZS Wheat drought-stre... 392 e-107
gb|BE470667.1|BE470667 WHE0262_G05_G05ZS Wheat drought-stre... 319 2e-085
gb|BE405497.1|BE405497 WHE1212_A05_B10ZS Wheat etiolated se... 285 3e-075
gb|AL812867.1|AL812867 AL812867 e:411 Triticum aestivum cDN... 202 3e-050
gb|CD923910.1|CD923910 G750.110L13F010710 G750 Triticum aes... 190 1e-046
gb|BI750676.1|BI750676 Ta01_10e08_R Ta01_AAFC_ECORC_Fusariu... 149 4e-034
gb|BJ270210.1|BJ270210 BJ270210 Y. Ogihara unpublished cDNA... 107 1e-021
gb|CA501829.1|CA501829 WHE4039_C02_F03ZT Wheat meiotic anth... 107 1e-021
gb|BF200983.1|BF200983 WHE0825-0828_K07_K07ZS Wheat vernali... 42 0.064
gb|AL815383.1|AL815383 AL815383 j:223 Triticum aestivum cDN... 40 0.25
>gb|CB307577.1|CB307577 HFIG562 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 636
Score = 607 bits (306), Expect = e-172
Identities = 494/557 (88%)
Strand = Plus / Plus
Query: 317 catcaaggaggagtttggccagatcccacggattggctggcagattgatccgtttgggca 376
|||||||||||||||||| ||||| || ||||||| |||||||| ||||||||||||||
Sbjct: 17 catcaaggaggagtttggtcagattccgaggattggttggcagatcgatccgtttgggca 76
Query: 377 ctctgcggttcaggcttaccttcttggcgcagaagtaggattcgatgctttctatttctt 436
||||||||||||||||||||| || || ||||| |||||||| ||||| || ||||| ||
Sbjct: 77 ctctgcggttcaggcttacctgctcggtgcagaggtaggatttgatgccttatatttttt 136
Query: 437 ccggattgattaccaagaccgtgatacacggaaaggaacaaaagaactcgaggttgtatg 496
|||||||||||||||||| ||||| || |||| | |||||||||||||||||||||||
Sbjct: 137 ccggattgattaccaagatcgtgacacgaggaatgtgacaaaagaactcgaggttgtatg 196
Query: 497 gaggggctccaagaccttgggctcatcggctgatatctttgctggcatctttccaaaaaa 556
|||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 197 gaggggctccaagaccttcggctcatcagctgatatttttgctggcatcttcccaaaaaa 256
Query: 557 ctatgaaccacctcctggtgatttttattttgaagttgatgataattcccctgttgtcca 616
||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 257 ttatgaaccaccacctggtgagttttattttgaagtcgatgatacttcccctgttgtcca 316
Query: 617 ggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttgttgctgc 676
|||||||||||||||||| ||||| ||||||||| |||| || |||||||||||||||||
Sbjct: 317 ggatgatccccttctttttgattacaatgttgaacaacgggtgaatgattttgttgctgc 376
Query: 677 agctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaacaga 736
||| | |||||||||||| | || |||||||| ||||||||||||||||||||||||||
Sbjct: 377 agcgctggcacaggcaaatgttacaaggacaaaccatatcatgtttacaatgggaacaga 436
Query: 737 cttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcactatgt 796
||||||||| ||||||||||| ||||||||| || | ||||||||| ||||||| |||||
Sbjct: 437 cttcaaatatcaatacgcagaaagttggttcagacagatggacaaattaattcattatgt 496
Query: 797 gaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaa 856
|||||||||||||||| | |||| || || || || ||||||||||| || ||||| ||
Sbjct: 497 gaacaaggatggccgtgtgaatgccctgtactctactccttccatttacactgatgcgaa 556
Query: 857 atatgctgcaaatgagc 873
|| | ||||| ||||||
Sbjct: 557 attttctgcanatgagc 573
>gb|BE470666.1|BE470666 WHE0262_G04_G04ZS Wheat drought-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0262_G04_G04, mRNA
sequence
Length = 406
Score = 392 bits (198), Expect = e-107
Identities = 319/358 (89%), Gaps = 1/358 (0%)
Strand = Plus / Plus
Query: 516 ggctcatcggctgatatctttgctggcatctttccaaaaaactatgaaccacctcctggt 575
|||||||| |||||||| |||||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 4 ggctcatcagctgatatttttgctggcatcttcccaaaaat-tatgaaccaccacctggt 62
Query: 576 gatttttattttgaagttgatgataattcccctgttgtccaggatgatccccttcttttc 635
|| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63 gagttttattttgaagtcgatgatacttcccctgttgtccaggatgatccccttcttttt 122
Query: 636 gattataatgttgaagaacgagtaaatgattttgttgctgcagctgtagcacaggcaaat 695
||||| ||||||||| |||| || |||||||||||||||||||| | ||||||||||||
Sbjct: 123 gattacaatgttgaacaacgggtgaatgattttgttgctgcagcgctggcacaggcaaat 182
Query: 696 atcacgaggacaaatcatatcatgtttacaatgggaacagacttcaaataccaatacgca 755
| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 183 gttacaaggacaaaccatatcatgtttacaatgggaacagacttcaaatatcaatacgca 242
Query: 756 gagagttggttcggaaatatggacaaactaattcactatgtgaacaaggatggccgtatc 815
|| ||||||||| || | ||||||||| ||||||| ||||||||||||||||||||| |
Sbjct: 243 gaaagttggttcagacagatggacaaattaattcattatgtgaacaaggatggccgtgtg 302
Query: 816 catgctctttattccacaccttccatttataccgatgcaaaatatgctgcaaatgagc 873
||||||| || ||||| ||||||||||| || |||||||||| | || |||||||||
Sbjct: 303 aatgctctgtactccactccttccatttacactgatgcaaaattttctacaaatgagc 360
>gb|BE470667.1|BE470667 WHE0262_G05_G05ZS Wheat drought-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0262_G05_G05, mRNA
sequence
Length = 315
Score = 319 bits (161), Expect = 2e-085
Identities = 263/297 (88%)
Strand = Plus / Plus
Query: 516 ggctcatcggctgatatctttgctggcatctttccaaaaaactatgaaccacctcctggt 575
|||||||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 4 ggctcatcagctgatatttttgctggcatcttcccaaaaaattatgaaccaccacctggt 63
Query: 576 gatttttattttgaagttgatgataattcccctgttgtccaggatgatccccttcttttc 635
|| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 64 gagttttattttgaagtcgatgatacttcccctgttgtccaggatgatccccttcttttt 123
Query: 636 gattataatgttgaagaacgagtaaatgattttgttgctgcagctgtagcacaggcaaat 695
||||| ||||||||| |||| || |||||||||||||||||||| || || |||||||||
Sbjct: 124 gattacaatgttgaacaacgggtgaatgattttgttgctgcagcggtggcgcaggcaaat 183
Query: 696 atcacgaggacaaatcatatcatgtttacaatgggaacagacttcaaataccaatacgca 755
| || |||||||| |||||||||||||| |||||||||||||| |||| || | ||||
Sbjct: 184 gttacaaggacaaaccatatcatgtttacggtgggaacagacttctaatatcagtgcgca 243
Query: 756 gagagttggttcggaaatatggacaaactaattcactatgtgaacaaggatggccgt 812
|| ||||||||| || ||||||| | ||||||| |||||||||||||||||||||
Sbjct: 244 gaaagttggttcagaccgatggacatattaattcattatgtgaacaaggatggccgt 300
>gb|BE405497.1|BE405497 WHE1212_A05_B10ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1212_A05_B10, mRNA
sequence
Length = 675
Score = 285 bits (144), Expect = 3e-075
Identities = 241/272 (88%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 602 ttcccctgttgtccaggatgatccccttcttttcgattataatgttgaagaacgagtaaa 661
|||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| || ||
Sbjct: 2 ttcccctgttgtccagga-gatccccttctttttgattacaatgttgaacaacgggtgaa 60
Query: 662 tgattttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgtt 721
|||||||||||||||||| | |||||||||||| | || |||||||| |||||||||||
Sbjct: 61 tgattttgttgctgcagcgctggcacaggcaaatgttacaaggacaaaccatatcatgtt 120
Query: 722 tacaatgggaacagacttcaaataccaatacgcagagagttggttcggaaatatggacaa 781
|||||||||||||||||||||||| ||||||||||| ||||||||| || | ||||||||
Sbjct: 121 tacaatgggaacagacttcaaatatcaatacgcagaaagttggttcagacagatggacaa 180
Query: 782 actaattcactatgtgaacaaggatggccgtatccatgctctttattccacaccttccat 841
| ||||||| ||||||||||||||||||||| | ||||||| || ||||| ||||||||
Sbjct: 181 attaattcattatgtgaacaaggatggccgtgtgaatgctctgtactccactccttccat 240
Query: 842 ttataccgatgcaaaatatgctgcaaatgagc 873
||| || |||||||||| | || |||||||||
Sbjct: 241 ttacactgatgcaaaattttctacaaatgagc 272
>gb|AL812867.1|AL812867 AL812867 e:411 Triticum aestivum cDNA clone G02_e411_plate_4, mRNA
sequence
Length = 423
Score = 202 bits (102), Expect = 3e-050
Identities = 168/190 (88%)
Strand = Plus / Plus
Query: 684 gcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaacagacttcaaa 743
|||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12 gcacaggcaaatgttacaaggacaaaccatatcatgtttacaatgggaacagacttcaaa 71
Query: 744 taccaatacgcagagagttggttcggaaatatggacaaactaattcactatgtgaacaag 803
|| ||||||||||| ||||||||| || | ||||||||| ||||||| ||||||||||||
Sbjct: 72 tatcaatacgcagaaagttggttcagacagatggacaaattaattcattatgtgaacaag 131
Query: 804 gatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatgct 863
||||||||| | ||||||| || ||||| ||||||||||| || |||||||||| | ||
Sbjct: 132 gatggccgtgtgaatgctctgtactccactccttccatttacactgatgcaaaattttct 191
Query: 864 gcaaatgagc 873
|||||||||
Sbjct: 192 acaaatgagc 201
>gb|CD923910.1|CD923910 G750.110L13F010710 G750 Triticum aestivum cDNA clone G750110L13,
mRNA sequence
Length = 639
Score = 190 bits (96), Expect = 1e-046
Identities = 153/172 (88%)
Strand = Plus / Plus
Query: 702 aggacaaatcatatcatgtttacaatgggaacagacttcaaataccaatacgcagagagt 761
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 14 aggacaaaccatatcatgtttacaatgggaacagacttcaaatatcaatacgcagaaagt 73
Query: 762 tggttcggaaatatggacaaactaattcactatgtgaacaaggatggccgtatccatgct 821
|||||| || | ||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct: 74 tggttcagacagatggacaaattaattcattatgtgaacaaggatggccgtgtgaatgct 133
Query: 822 ctttattccacaccttccatttataccgatgcaaaatatgctgcaaatgagc 873
|| || ||||| ||||||||||| || |||||||||| | || |||||||||
Sbjct: 134 ctgtactccactccttccatttacactgatgcaaaattttctacaaatgagc 185
>gb|BI750676.1|BI750676 Ta01_10e08_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_10e08, mRNA
sequence
Length = 388
Score = 149 bits (75), Expect = 4e-034
Identities = 168/199 (84%)
Strand = Plus / Minus
Query: 198 gtgaaggggctcatcagctctggacggctggaattaataaatggtggcatgtgcatgcac 257
||||| ||||| ||||| | |||||| ||||||| |||||| | |||||||||||||||
Sbjct: 385 gtgaaagggcttgtcagccccggacggttggaattcataaataggggcatgtgcatgcac 326
Query: 258 gatgaggcggctgtacactatattgacatgatcgatcagactacacttggacacaagtac 317
|| |||||| |||| ||| ||||||||||||||||| |||||||| || |||| || |
Sbjct: 325 gacgaggcgactgtgtgctacattgacatgatcgatcaaactacactggggcacaggttc 266
Query: 318 atcaaggaggagtttggccagatcccacggattggctggcagattgatccgtttgggcac 377
||||| ||||| ||| | ||||| || ||||||| |||||||||||||| |||||||||
Sbjct: 265 atcaatgaggaatttagtcagattccgaggattggttggcagattgatccatttgggcac 206
Query: 378 tctgcggttcaggcttacc 396
||| | |||||||||||||
Sbjct: 205 tctacagttcaggcttacc 187
>gb|BJ270210.1|BJ270210 BJ270210 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh6i21 5', mRNA sequence
Length = 419
Score = 107 bits (54), Expect = 1e-021
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 88 acgacgtcggctggctcaagaccgtcgaccagtactacgtcgggtccaacaactccatcc 147
Query: 61 agggggcatgcgtg 74
|||| || ||||||
Sbjct: 148 agggcgcgtgcgtg 161
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 276 tatattgacatgatcgatcagactacacttgg 307
|||||||||||||| |||||||| ||||||||
Sbjct: 363 tatattgacatgattgatcagaccacacttgg 394
>gb|CA501829.1|CA501829 WHE4039_C02_F03ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4039_C02_F03, mRNA sequence
Length = 688
Score = 107 bits (54), Expect = 1e-021
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 210 acgacgtcggctggctcaagaccgtcgaccagtactacgtcgggtccaacaactccatcc 269
Query: 61 agggggcatgcgtg 74
|||| || ||||||
Sbjct: 270 agggcgcgtgcgtg 283
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 276 tatattgacatgatcgatcagactacacttgg 307
|||||||||||||| |||||||| ||||||||
Sbjct: 485 tatattgacatgattgatcagaccacacttgg 516
>gb|BF200983.1|BF200983 WHE0825-0828_K07_K07ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0825-0828_K07_K07, mRNA sequence
Length = 542
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gcgtgcagaacgtgctggatt 90
|||||||||||||||||||||
Sbjct: 137 gcgtgcagaacgtgctggatt 157
>gb|AL815383.1|AL815383 AL815383 j:223 Triticum aestivum cDNA clone B08_j223_plate_4, mRNA
sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 834 ccttccatttataccgatgcaaaatatgctgcaaatgagc 873
||||||||||| || ||||| |||| | ||||||||||||
Sbjct: 32 ccttccatttacactgatgcgaaattttctgcaaatgagc 71
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 182,527
Number of Sequences: 636343
Number of extensions: 182527
Number of successful extensions: 49292
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49269
Number of HSP's gapped (non-prelim): 21
length of query: 888
length of database: 367,240,239
effective HSP length: 19
effective length of query: 869
effective length of database: 355,149,722
effective search space: 308625108418
effective search space used: 308625108418
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)