BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD453772.1|CD453772 WHE2105_D09_G17ZT CS wheat salt-stre... 343 1e-092
gb|CA500396.1|CA500396 WHE4018_H09_O18ZT Wheat meiotic anth... 335 3e-090
gb|CK158573.1|CK158573 FGAS039848 Triticum aestivum FGAS: T... 301 3e-080
gb|CA483980.1|CA483980 WHE3207_G07_N13ZS Wheat meiotic anth... 242 3e-062
gb|BE498473.1|BE498473 WHE0967_D07_G13ZS Wheat pre-anthesis... 194 6e-048
gb|CK160384.1|CK160384 FGAS041959 Triticum aestivum FGAS: T... 180 9e-044
gb|CA498409.1|CA498409 WHE3243_A06_B11ZT Wheat meiotic anth... 168 3e-040
>gb|CD453772.1|CD453772 WHE2105_D09_G17ZT CS wheat salt-stressed crown cDNA library
Triticum aestivum cDNA clone WHE2105_D09_G17, mRNA
sequence
Length = 685
Score = 343 bits (173), Expect = 1e-092
Identities = 335/389 (86%)
Strand = Plus / Plus
Query: 236 actgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaaca 295
|||| |||||||||| |||||||||||||||| |||| | |||||||||||| |||||||
Sbjct: 297 actgtccaagcttcccccatatgcctttctttactgttaggcacttcaatttaccaaaca 356
Query: 296 caaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgcatt 355
| || || ||||| |||| |||||||| | || ||||||||||||||||| |||||||
Sbjct: 357 cgaaccctgactttggaggattgccatctatgagggagttctcgtatatctccttgcatt 416
Query: 356 cttgtacaacctccttggcttccttttttggaatgccttcccgcattgccacaagcttat 415
||||||| |||||||||||||| || |||||||||||| |||| ||| || ||||| |
Sbjct: 417 cttgtacgacctccttggcttctttccgtggaatgccttctcgcagtgcaacgagcttct 476
Query: 416 aaaaaacctcaggcgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaa 475
|| |||||| | ||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct: 477 caacaacctccgacgggcaatctggttgatgttccagaatatttgtgtaaatgagagtga 536
Query: 476 agctatccaaactctcagctgaagctagctccctcatatctgccagaatccgcactctgc 535
| ||||||| ||||||||||||||| |||||||| | ||| |||||||| || ||||||
Sbjct: 537 aactatccagactctcagctgaagcaagctcccttagatcagccagaattcgtactctgt 596
Query: 536 tttcaacttttgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatcta 595
|||||||||| ||||| | |||| || |||||||||||||||||||||||||||||||
Sbjct: 597 tttcaactttagtcacactagtgtgctctctgaagaaatccataagcacctcttcatcta 656
Query: 596 acctcatcctctctatcgtttcttctttt 624
|||||||||||| | |||||||||||||
Sbjct: 657 gcctcatcctctcaaccgtttcttctttt 685
>gb|CA500396.1|CA500396 WHE4018_H09_O18ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4018_H09_O18, mRNA sequence
Length = 707
Score = 335 bits (169), Expect = 3e-090
Identities = 358/421 (85%)
Strand = Plus / Minus
Query: 236 actgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaaca 295
|||| |||||||||| |||||||||||||||| |||| | |||||||||||| |||||||
Sbjct: 437 actgtccaagcttcccccatatgcctttctttactgttaggcacttcaatttaccaaaca 378
Query: 296 caaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgcatt 355
| || || ||||| | || |||||||| | || ||||||||||||||||| |||||||
Sbjct: 377 cgaaccctgactttggcggattgccatctatgagggagttctcgtatatctccttgcatt 318
Query: 356 cttgtacaacctccttggcttccttttttggaatgccttcccgcattgccacaagcttat 415
||||||| |||||||||||||| || ||||||||||||||||| ||| || ||||| |
Sbjct: 317 cttgtacgacctccttggcttctttccgtggaatgccttcccgcagtgcaacgagcttct 258
Query: 416 aaaaaacctcaggcgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaa 475
|| |||||| | |||||| || |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 257 caacaacctccgacgggcagtctggttgatgttccagaatatttgtgtaaatcagagtga 198
Query: 476 agctatccaaactctcagctgaagctagctccctcatatctgccagaatccgcactctgc 535
| ||||||| ||||||||||||||| |||||||||| ||| |||||||| || ||||||
Sbjct: 197 aactatccagactctcagctgaagcaagctccctcagatcagccagaattcgtactctgt 138
Query: 536 tttcaacttttgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatcta 595
|||||||||| ||||| | ||| || |||||||||||||||||||| ||||||||||
Sbjct: 137 tttcaactttagtcacactagtgtactctctgaagaaatccataagcacttcttcatcta 78
Query: 596 acctcatcctctctatcgtttcttcttttatgtagtttttctgagaaaggagatggtcaa 655
|||||||||||| | ||||||||||||||| || ||||||||| || ||||||||||
Sbjct: 77 gcctcatcctctcaaccgtttcttcttttatataatttttctgactgagaagatggtcaa 18
Query: 656 c 656
|
Sbjct: 17 c 17
>gb|CK158573.1|CK158573 FGAS039848 Triticum aestivum FGAS: TaLt5 Triticum aestivum cDNA,
mRNA sequence
Length = 914
Score = 301 bits (152), Expect = 3e-080
Identities = 344/406 (84%), Gaps = 2/406 (0%)
Strand = Plus / Plus
Query: 236 actgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaaca 295
|||| |||||||||| ||||||| |||||||| |||| | ||||||||||| |||||||
Sbjct: 404 actgtccaagcttcccccatatgtctttctttactgttagacacttcaatttaccaaaca 463
Query: 296 caaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgcatt 355
| || || ||||| |||| |||||||| | ||| ||||||||||||||||| |||||||
Sbjct: 464 cgaaccctgactttggaggattgccatctataagggagttctcgtatatctccttgcatt 523
Query: 356 cttgtacaacctccttggcttccttttttggaatgccttcccgcattgccacaagcttat 415
||||||| |||||||||||||| || ||||||||||||||||| ||| || ||||| |
Sbjct: 524 cttgtacgacctccttggcttctttccgtggaatgccttcccgcagtgcaacgagcttct 583
Query: 416 aaaaaacctcaggcgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaa 475
|| |||||| | ||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct: 584 caacaacctccgacgggcaatctggttgatgttccagaatatttgtgtaaatcagagtga 643
Query: 476 agctatccaaactctcagctgaagctagctccctcatatctgccagaatccgcactctgc 535
| ||||||| ||||||||||||||| |||||||| | ||| |||||||| || ||||||
Sbjct: 644 aactatccagactctcagctgaagcaagctcccttagatcagccagaattcgtactctgt 703
Query: 536 tttcaacttttgtcac-gttgatgtgttccctgaagaaatccataagcacctcttcatct 594
|||||||||| ||||| | | |||| || |||||||||||||||||||| |||||||||
Sbjct: 704 tttcaactttagtcacactagttgtgctctctgaagaaatccataagcacttcttcatct 763
Query: 595 aacc-tcatcctctctatcgtttcttcttttatgtagtttttctga 639
||| ||||| ||| | || |||||||||||| || |||||||||
Sbjct: 764 taccttcatcttcttcancgnttcttcttttatataatttttctga 809
>gb|CA483980.1|CA483980 WHE3207_G07_N13ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3207_G07_N13, mRNA sequence
Length = 455
Score = 242 bits (122), Expect = 3e-062
Identities = 236/274 (86%)
Strand = Plus / Minus
Query: 420 aacctcaggcgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagct 479
|||||| | |||||| || |||||||||||||| ||||| |||||||| ||||| || ||
Sbjct: 431 aacctccgacgggcagtctggttgatgttccagaatatttgtgtaaatcagagtgaaact 372
Query: 480 atccaaactctcagctgaagctagctccctcatatctgccagaatccgcactctgctttc 539
||||| ||||||||||||||| |||||||||| ||| |||||||| || |||||| ||||
Sbjct: 371 atccagactctcagctgaagcaagctccctcagatcagccagaattcgtactctgttttc 312
Query: 540 aacttttgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacct 599
|||||| ||||| | ||| || |||||||||||||||||||| |||||||||| |||
Sbjct: 311 aactttagtcacactagtgtactctctgaagaaatccataagcacttcttcatctagcct 252
Query: 600 catcctctctatcgtttcttcttttatgtagtttttctgagaaaggagatggtcaacata 659
||||||||| | ||||||||||||||| || ||||||||| || ||||||||||||||
Sbjct: 251 catcctctcaaccgtttcttcttttatataatttttctgactgagaagatggtcaacata 192
Query: 660 gaccacaattgtttcctctatgcaagcctccaca 693
|| |||||||||||||||| ||||| |||||||
Sbjct: 191 tacaacaattgtttcctctaggcaagactccaca 158
>gb|BE498473.1|BE498473 WHE0967_D07_G13ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0967_D07_G13, mRNA sequence
Length = 459
Score = 194 bits (98), Expect = 6e-048
Identities = 193/225 (85%)
Strand = Plus / Minus
Query: 469 agagtaaagctatccaaactctcagctgaagctagctccctcatatctgccagaatccgc 528
||||| || ||||||| ||||||||||||||| |||||||||| ||| |||||||| ||
Sbjct: 458 agagtgaaactatccagactctcagctgaagcaagctccctcagatcagccagaattcgt 399
Query: 529 actctgctttcaacttttgtcacgttgatgtgttccctgaagaaatccataagcacctct 588
|||||| | |||||||| ||||| | ||| || |||||||||||||||||||| |||
Sbjct: 398 actctgttntcaactttagtcacactagtgtactctctgaagaaatccataagcacttct 339
Query: 589 tcatctaacctcatcctctctatcgtttcttcttttatgtagtttttctgagaaaggaga 648
||||||| |||||||||||| | ||||||||||||||| || ||||||||| || |||
Sbjct: 338 tcatctagcctcatcctctcaaccgtttcttcttttatataatttttctgactgagaaga 279
Query: 649 tggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||||||||| || |||||||||||||||| ||||| |||||||
Sbjct: 278 tggtcaacatatacaacaattgtttcctctaggcaagactccaca 234
>gb|CK160384.1|CK160384 FGAS041959 Triticum aestivum FGAS: TaLt5 Triticum aestivum cDNA,
mRNA sequence
Length = 904
Score = 180 bits (91), Expect = 9e-044
Identities = 253/305 (82%), Gaps = 2/305 (0%)
Strand = Plus / Plus
Query: 236 actgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaaca 295
|||| |||||||||| ||||||| |||||||| |||| | ||||||||||| |||||||
Sbjct: 400 actgtccaagcttcccccatatgtctttctttactgttagacacttcaatttaccaaaca 459
Query: 296 caaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgcatt 355
| || || ||||| |||| |||||||| | ||| ||||||||||||||||| |||||||
Sbjct: 460 cgaaccctgactttggaggattgccatctataagggagttctcgtatatctccttgcatt 519
Query: 356 cttgtacaacctccttggcttccttttttggaatgccttcccgcattgccacaagcttat 415
||||||| |||||||||||||| || ||||||||||||||||| ||| || ||||| |
Sbjct: 520 cttgtacgacctccttggcttctttccgtggaatgccttcccgcagtgcaacgagcttct 579
Query: 416 aaaaaacctcaggcgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaa 475
| |||||| | |||| ||| | || ||||||||| ||||| |||||||| ||||| |
Sbjct: 580 -cacaacctccgacgggncatctgntttatgttccagaatatttgtgtaaatcagagtga 638
Query: 476 agctatccaaactctcagctgaagctagctccctcatatctgccagaatccgcactctgc 535
| |||||| ||||||||||||||| |||||||| | ||| | |||||| || ||||||
Sbjct: 639 a-atatccagactctcagctgaagcaagctcccttagatcaggcagaattcgtactctgt 697
Query: 536 tttca 540
|||||
Sbjct: 698 tttca 702
>gb|CA498409.1|CA498409 WHE3243_A06_B11ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3243_A06_B11, mRNA sequence
Length = 735
Score = 168 bits (85), Expect = 3e-040
Identities = 154/177 (87%)
Strand = Plus / Minus
Query: 517 gccagaatccgcactctgctttcaacttttgtcacgttgatgtgttccctgaagaaatcc 576
|||||||| || |||||| |||||||||| ||||| | |||| || ||||||||||||
Sbjct: 729 gccagaattcgtactctgttttcaactttagtcacactagtgtgctctctgaagaaatcc 670
Query: 577 ataagcacctcttcatctaacctcatcctctctatcgtttcttcttttatgtagtttttc 636
||||||||||||||||||| |||||||||||| | ||||||||||||||| || ||||||
Sbjct: 669 ataagcacctcttcatctagcctcatcctctcaaccgtttcttcttttatataatttttc 610
Query: 637 tgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||| || |||||||||||||| || |||||||||||||||| ||||| |||||||
Sbjct: 609 tgactgagaagatggtcaacatatacaacaattgtttcctctaggcaagactccaca 553
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,696
Number of Sequences: 636343
Number of extensions: 136696
Number of successful extensions: 34638
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34620
Number of HSP's gapped (non-prelim): 12
length of query: 721
length of database: 367,240,239
effective HSP length: 19
effective length of query: 702
effective length of database: 355,149,722
effective search space: 249315104844
effective search space used: 249315104844
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)