BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ320027.1|BJ320027 BJ320027 Y. Ogihara unpublished cDNA... 157 8e-037
gb|BT009236.1| Triticum aestivum clone wle1n.pk0109.e10:fis... 157 8e-037
gb|CA687551.1|CA687551 wlm96.pk038.n7 wlm96 Triticum aestiv... 72 4e-011
gb|AL810110.1|AL810110 AL810110 d:15 Triticum aestivum cDNA... 66 2e-009
gb|AL819732.1|AL819732 AL819732 n:129 Triticum aestivum cDN... 60 1e-007
gb|BQ238253.1|BQ238253 TaE05006E03F TaE05 Triticum aestivum... 52 3e-005
>gb|BJ320027.1|BJ320027 BJ320027 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf13c22 3', mRNA sequence
Length = 699
Score = 157 bits (79), Expect = 8e-037
Identities = 178/211 (84%)
Strand = Plus / Minus
Query: 9 gccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccg 68
|||||||| | ||||||||||||| | | | ||||||||||| ||| || || |||
Sbjct: 392 gccggcctcacgccgtggatcatgtacaggcccgagaaccacgtcgtgccggagccgccg 333
Query: 69 tgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaag 128
|||| ||| |||||||||||||||||||||||||| || || |||| || |||||||| |
Sbjct: 332 tgcggccgtgccatgtccatcgagccgtgcttccaccaggccccctacttcgactgcagg 273
Query: 129 gcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtg 188
|||| || |||| |||| |||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 272 gcgaagagggacgccgacctgggcaaggtggtgccgtacgtgaggcactgcgaagacgtc 213
Query: 189 agctgggggctcaagattgtagatcaaactc 219
||||||||||||||||||||| || ||||||
Sbjct: 212 agctgggggctcaagattgtaaatgaaactc 182
>gb|BT009236.1| Triticum aestivum clone wle1n.pk0109.e10:fis, full insert mRNA
sequence
Length = 1262
Score = 157 bits (79), Expect = 8e-037
Identities = 178/211 (84%)
Strand = Plus / Plus
Query: 9 gccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccg 68
|||||||| | ||||||||||||| | | | ||||||||||| ||| || || |||
Sbjct: 790 gccggcctcacgccgtggatcatgtacaggcccgagaaccacgtcgtgccggagccgccg 849
Query: 69 tgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaag 128
|||| ||| |||||||||||||||||||||||||| || || |||| || ||||||||||
Sbjct: 850 tgcggccgtgccatgtccatcgagccgtgcttccaccaggccccctacttcgactgcaag 909
Query: 129 gcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtg 188
|| | || |||| |||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct: 910 gccaagagggacgccgacctgggcaaggtggtgccgtacgtgaggcactgcgaggacgtc 969
Query: 189 agctgggggctcaagattgtagatcaaactc 219
|||||||| |||||||||||| || ||||||
Sbjct: 970 agctggggcctcaagattgtaaatgaaactc 1000
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 370 tgtagatagttgatagacagatccattaat 399
||||||||||||||| |||||| |||||||
Sbjct: 1146 tgtagatagttgataaacagattcattaat 1175
>gb|CA687551.1|CA687551 wlm96.pk038.n7 wlm96 Triticum aestivum cDNA clone wlm96.pk038.n7 5'
end, mRNA sequence
Length = 468
Score = 71.9 bits (36), Expect = 4e-011
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 120 gactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgc 179
||||||| |||||||| |||| ||| |||| ||||| ||||| || ||| |||||||
Sbjct: 239 gactgcacggcgaggagggacgtggatgtggggaaggtggtgccgtatgtgcggcactgt 180
Query: 180 gaggacgtgagctgggggctcaagattg 207
|||||||||||||||||| |||||||||
Sbjct: 179 gaggacgtgagctgggggatcaagattg 152
>gb|AL810110.1|AL810110 AL810110 d:15 Triticum aestivum cDNA clone C06_d15_plate_6, mRNA
sequence
Length = 390
Score = 65.9 bits (33), Expect = 2e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 63 ccaccgtgcgtccgcgccatgtccatcgagccgtgcttcca 103
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 292 ccaccgtgcgtgcgcgccatgtccatggagccgtgcttcca 332
>gb|AL819732.1|AL819732 AL819732 n:129 Triticum aestivum cDNA clone B11_n129_plate_4, mRNA
sequence
Length = 410
Score = 60.0 bits (30), Expect = 1e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 42 gagaaccacgtgacgccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttc 101
||||||||||| ||| || || ||||||| ||| ||||||||||||||||||||||||
Sbjct: 339 gagaaccacgtcgtgccggagccgccgtgcggccgtgccatgtccatcgagccgtgcttc 398
Query: 102 ca 103
||
Sbjct: 399 ca 400
>gb|BQ238253.1|BQ238253 TaE05006E03F TaE05 Triticum aestivum cDNA clone TaE05006E03F, mRNA
sequence
Length = 500
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 66 ccgtgcgtccgcgccatgtccatcgagccgtgcttcca 103
|||||||| |||||| ||||||| ||||||||||||||
Sbjct: 306 ccgtgcgtgcgcgccgtgtccatggagccgtgcttcca 269
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,926
Number of Sequences: 636343
Number of extensions: 89926
Number of successful extensions: 26471
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26458
Number of HSP's gapped (non-prelim): 10
length of query: 466
length of database: 367,240,239
effective HSP length: 19
effective length of query: 447
effective length of database: 355,149,722
effective search space: 158751925734
effective search space used: 158751925734
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)