BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923331.2.1
(496 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ167130.1|BQ167130 WHE0946_F09_K18ZY Wheat 5-15 DAP spi... 133 1e-029
gb|CA602908.1|CA602908 wr1.pk0007.e11 wr1 Triticum aestivum... 133 1e-029
gb|CD907374.1|CD907374 G468.106L19R010929 G468 Triticum aes... 133 1e-029
emb|AJ582182.1|TAE582182 Triticum aestivum mRNA for putativ... 133 1e-029
gb|CA502151.1|CA502151 WHE4043_D07_H13ZT Wheat meiotic anth... 98 7e-019
gb|CD907433.1|CD907433 G468.106O06F010813 G468 Triticum aes... 88 7e-016
gb|CA661821.1|CA661821 wlmk1.pk0008.b8 wlmk1 Triticum aesti... 50 1e-004
>gb|BQ167130.1|BQ167130 WHE0946_F09_K18ZY Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0946_F09_K18, mRNA sequence
Length = 701
Score = 133 bits (67), Expect = 1e-029
Identities = 154/183 (84%)
Strand = Plus / Plus
Query: 309 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatc 368
|||||||||| |||| | |||| |||||||| |||| ||| || | |||||||||||
Sbjct: 292 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 351
Query: 369 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 428
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 352 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 411
Query: 429 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 488
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 412 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 471
Query: 489 tct 491
|||
Sbjct: 472 tct 474
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 191 gtagttacacaaaaattacttcaagctttgcacagggatgg 231
||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 174 gtagttatacaaaaatcacctcaagctttgcacatggatgg 214
>gb|CA602908.1|CA602908 wr1.pk0007.e11 wr1 Triticum aestivum cDNA clone wr1.pk0007.e11 5'
end, mRNA sequence
Length = 487
Score = 133 bits (67), Expect = 1e-029
Identities = 154/183 (84%)
Strand = Plus / Minus
Query: 309 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatc 368
|||||||||| |||| | |||| |||||||| |||| ||| || | |||||||||||
Sbjct: 264 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 205
Query: 369 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 428
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 204 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 145
Query: 429 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 488
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 144 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 85
Query: 489 tct 491
|||
Sbjct: 84 tct 82
>gb|CD907374.1|CD907374 G468.106L19R010929 G468 Triticum aestivum cDNA clone G468106L19,
mRNA sequence
Length = 769
Score = 133 bits (67), Expect = 1e-029
Identities = 154/183 (84%)
Strand = Plus / Plus
Query: 309 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatc 368
|||||||||| |||| | |||| |||||||| |||| ||| || | |||||||||||
Sbjct: 300 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 359
Query: 369 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 428
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 360 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 419
Query: 429 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 488
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 420 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 479
Query: 489 tct 491
|||
Sbjct: 480 tct 482
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 191 gtagttacacaaaaattacttcaagctttgcacagggatgg 231
||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 182 gtagttatacaaaaatcacctcaagctttgcacatggatgg 222
>emb|AJ582182.1|TAE582182 Triticum aestivum mRNA for putative glycoprotein
3-alpha-L-fucosyltransferase (core3ft gene)
Length = 1750
Score = 133 bits (67), Expect = 1e-029
Identities = 154/183 (84%)
Strand = Plus / Minus
Query: 309 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatc 368
|||||||||| |||| | |||| |||||||| |||| ||| || | |||||||||||
Sbjct: 1417 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 1358
Query: 369 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 428
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 1357 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 1298
Query: 429 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 488
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 1297 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 1238
Query: 489 tct 491
|||
Sbjct: 1237 tct 1235
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 191 gtagttacacaaaaattacttcaagctttgcacagggatgg 231
||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 1535 gtagttatacaaaaatcacctcaagctttgcacatggatgg 1495
>gb|CA502151.1|CA502151 WHE4043_D07_H13ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4043_D07_H13, mRNA sequence
Length = 534
Score = 97.6 bits (49), Expect = 7e-019
Identities = 133/161 (82%)
Strand = Plus / Minus
Query: 309 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatc 368
|||||||||| |||| | |||| |||||||| |||| ||| || | |||||||||||
Sbjct: 201 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 142
Query: 369 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 428
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 141 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 82
Query: 429 tcccagagttaactggcctgatctcatgtaaatgctctctg 469
||| | ||||||||| ||||||| | |||||||||||||
Sbjct: 81 tcctaaagttaactgatctgatcttagataaatgctctctg 41
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 191 gtagttacacaaaaattacttcaagctttgcacagggatgg 231
||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 319 gtagttatacaaaaatcacctcaagctttgcacatggatgg 279
>gb|CD907433.1|CD907433 G468.106O06F010813 G468 Triticum aestivum cDNA clone G468106O06,
mRNA sequence
Length = 653
Score = 87.7 bits (44), Expect = 7e-016
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
|||||||||||| || |||||||| ||||||||||| || | || || ||| | |||||
Sbjct: 653 ccatacaggaacatgcttgagggatctaaatttaccatgcccggcagactcccaagctcc 594
Query: 432 cagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctct 491
| ||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct: 593 taaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctctct 534
>gb|CA661821.1|CA661821 wlmk1.pk0008.b8 wlmk1 Triticum aestivum cDNA clone wlmk1.pk0008.b8
5' end, mRNA sequence
Length = 600
Score = 50.1 bits (25), Expect = 1e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 368 ccttccatacaggaacgtggttgagggacctaaatt 403
|||||||||||||||| || |||||||| |||||||
Sbjct: 430 ccttccatacaggaacatgtttgaggganctaaatt 395
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,067
Number of Sequences: 636343
Number of extensions: 106067
Number of successful extensions: 18839
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18821
Number of HSP's gapped (non-prelim): 17
length of query: 496
length of database: 367,240,239
effective HSP length: 19
effective length of query: 477
effective length of database: 355,149,722
effective search space: 169406417394
effective search space used: 169406417394
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)