BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923171.2.1
(570 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA486940.1|CA486940 WHE4337_G03_M05ZS Wheat meiotic anth... 174 4e-042
gb|CA484547.1|CA484547 WHE4307_H01_P01ZS Wheat meiotic anth... 139 2e-031
gb|BE419087.1|BE419087 WWR018.H12R000101 ITEC WWR Wheat Roo... 50 2e-004
gb|BQ484040.1|BQ484040 WHE3515_G04_N07ZS Wheat unstressed r... 50 2e-004
gb|CK201118.1|CK201118 FGAS009637 Triticum aestivum FGAS: L... 50 2e-004
gb|CK216430.1|CK216430 FGAS028422 Triticum aestivum FGAS: L... 50 2e-004
gb|BE213555.1|BE213555 EST0245 Triticum aestivum Lambda Zap... 48 7e-004
gb|BE217039.1|BE217039 EST0434 Triticum aestivum Lambda Zap... 48 7e-004
gb|BI479961.1|BI479961 WHE3453_B02_D03ZS Wheat pre-anthesis... 42 0.041
gb|CA690232.1|CA690232 wlm96.pk046.l12 wlm96 Triticum aesti... 42 0.041
gb|BE213600.1|BE213600 EST0290 Triticum aestivum Lambda Zap... 40 0.16
gb|BJ243210.1|BJ243210 BJ243210 Y. Ogihara unpublished cDNA... 40 0.16
>gb|CA486940.1|CA486940 WHE4337_G03_M05ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4337_G03_M05, mRNA sequence
Length = 415
Score = 174 bits (88), Expect = 4e-042
Identities = 117/126 (92%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 274 agaaggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgc---ca 330
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 30 agaaggcgtgggtgccagaccctgtgaccggctactatcgcccagcaggtagcgctgcca 89
Query: 331 aggaggttgacgcggcggagctacgcgccaagctgctgacggaggctgcggccaactgat 390
||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 90 aggaggtggacgccgcggagctgcgcgccaagctgctcacggaggctgcggccaactgat 149
Query: 391 taatca 396
||||||
Sbjct: 150 taatca 155
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 205 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 264
Query: 503 gagc 506
||||
Sbjct: 265 gagc 268
>gb|CA484547.1|CA484547 WHE4307_H01_P01ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4307_H01_P01, mRNA sequence
Length = 480
Score = 139 bits (70), Expect = 2e-031
Identities = 106/116 (91%), Gaps = 4/116 (3%)
Strand = Plus / Plus
Query: 284 ggtgccggaccctgtcaccggctactatcgcccagcaggtagcgc---caaggaggttga 340
|||||| |||||||| |||||||| |||||||||||||||||||| ||||||||| ||
Sbjct: 1 ggtgccagaccctgtgaccggcta-tatcgcccagcaggtagcgctgccaaggaggtgga 59
Query: 341 cgcggcggagctacgcgccaagctgctgacggaggctgcggccaactgattaatca 396
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 60 cgccgcggagctgcgcgccaagctgctcacggaggctgcggccaactgattaatca 115
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 443 tccacctagcttctcctgctttaatattcgcgctcgttgatccccgagctcgttggccta 502
||||||||||||||| |||||||| || |||||||||||||| | | |||| ||||||||
Sbjct: 165 tccacctagcttctcttgctttaagatccgcgctcgttgatcgcggggctccttggccta 224
Query: 503 gagc 506
||||
Sbjct: 225 gagc 228
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 517 ctgaatgatacatatataata 537
|||||||||||||||||||||
Sbjct: 446 ctgaatgatacatatataata 466
>gb|BE419087.1|BE419087 WWR018.H12R000101 ITEC WWR Wheat Root Library Triticum aestivum
cDNA clone WWR018.H12, mRNA sequence
Length = 558
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgccc 316
|||||||||| ||||| |||||||||||||| |||||
Sbjct: 267 cgtgggtgcccgaccccgtcaccggctactaccgccc 303
>gb|BQ484040.1|BQ484040 WHE3515_G04_N07ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3515_G04_N07, mRNA sequence
Length = 604
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgccc 316
|||||||||| ||||| |||||||||||||| |||||
Sbjct: 269 cgtgggtgcccgaccccgtcaccggctactaccgccc 305
>gb|CK201118.1|CK201118 FGAS009637 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 832
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgccc 316
|||||||||| ||||| |||||||||||||| |||||
Sbjct: 366 cgtgggtgcccgaccccgtcaccggctactaccgccc 402
>gb|CK216430.1|CK216430 FGAS028422 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1059
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 280 cgtgggtgccggaccctgtcaccggctactatcgccc 316
|||||||||| ||||||||||||||| |||| |||||
Sbjct: 455 cgtgggtgcccgaccctgtcaccggccactaccgccc 419
>gb|BE213555.1|BE213555 EST0245 Triticum aestivum Lambda Zap Triticum aestivum cDNA clone
JA1_4A_G12_T3 5', mRNA sequence
Length = 613
Score = 48.1 bits (24), Expect = 7e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || | || ||||||||||||
Sbjct: 237 ggcgtgggtgccggacccggtgaccgggtactaccggccgtcgggcgccgccaaggaggt 296
Query: 338 tgacgcggcggagctacgcgccaagctg 365
|||||||| || | ||||||||||||
Sbjct: 297 ggacgcggctgacttgcgcgccaagctg 324
>gb|BE217039.1|BE217039 EST0434 Triticum aestivum Lambda Zap Triticum aestivum cDNA clone
JA1_5B_B03_T3 5', mRNA sequence
Length = 739
Score = 48.1 bits (24), Expect = 7e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || | || ||||||||||||
Sbjct: 322 ggcgtgggtgccggacccggtgaccgggtactaccggccgtcgggcgccgccaaggaggt 381
Query: 338 tgacgcggcggagctacgcgccaagctg 365
|||||||| || | ||||||||||||
Sbjct: 382 ggacgcggctgacttgcgcgccaagctg 409
>gb|BI479961.1|BI479961 WHE3453_B02_D03ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3453_B02_D03, mRNA sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctacta 310
|||||||||||||||||| || ||||| |||||
Sbjct: 190 ggcgtgggtgccggacccggtgaccgggtacta 222
>gb|CA690232.1|CA690232 wlm96.pk046.l12 wlm96 Triticum aestivum cDNA clone wlm96.pk046.l12
5' end, mRNA sequence
Length = 498
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctacta 310
|||||||||||||||||| || ||||| |||||
Sbjct: 254 ggcgtgggtgccggacccggtgaccgggtacta 286
Score = 42.1 bits (21), Expect = 0.041
Identities = 67/81 (82%), Gaps = 6/81 (7%)
Strand = Plus / Plus
Query: 79 ccatggagagagttgcatcaagctactgcgtcagcctcctagcacaaagcaggagggcct 138
||||||||||||||||||| | |||||||||||| || |||||| ||||||| ||
Sbjct: 73 ccatggagagagttgcatcgcg---ctgcgtcagccttctcgcacaa---aggaggggct 126
Query: 139 acactgtggccgcggccatgg 159
|| | | ||||||||||||||
Sbjct: 127 actccgcggccgcggccatgg 147
>gb|BE213600.1|BE213600 EST0290 Triticum aestivum Lambda Zap Triticum aestivum cDNA clone
JA1_4B_G05_T3 5', mRNA sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gtcagcctcctagcacaaag 127
||||||||||||||||||||
Sbjct: 113 gtcagcctcctagcacaaag 132
>gb|BJ243210.1|BJ243210 BJ243210 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf10b08 5', mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gtcagcctcctagcacaaag 127
||||||||||||||||||||
Sbjct: 64 gtcagcctcctagcacaaag 83
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,265
Number of Sequences: 636343
Number of extensions: 152265
Number of successful extensions: 49340
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49292
Number of HSP's gapped (non-prelim): 42
length of query: 570
length of database: 367,240,239
effective HSP length: 19
effective length of query: 551
effective length of database: 355,149,722
effective search space: 195687496822
effective search space used: 195687496822
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)