BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802297.2.1
(606 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ250058.1|BJ250058 BJ250058 Y. Ogihara unpublished cDNA... 274 7e-072
gb|BJ249964.1|BJ249964 BJ249964 Y. Ogihara unpublished cDNA... 256 2e-066
gb|BJ249108.1|BJ249108 BJ249108 Y. Ogihara unpublished cDNA... 161 7e-038
gb|BJ255363.1|BJ255363 BJ255363 Y. Ogihara unpublished cDNA... 121 6e-026
gb|BJ250042.1|BJ250042 BJ250042 Y. Ogihara unpublished cDNA... 86 3e-015
gb|BJ252439.1|BJ252439 BJ252439 Y. Ogihara unpublished cDNA... 86 3e-015
gb|BE606718.1|BE606718 WHE0907_G06_N11ZS Wheat 5-15 DAP spi... 62 5e-008
gb|CV777756.1|CV777756 FGAS072163 Triticum aestivum FGAS: L... 62 5e-008
gb|CK211986.1|CK211986 FGAS023849 Triticum aestivum FGAS: L... 48 7e-004
gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA... 44 0.011
gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA... 44 0.011
gb|BJ243429.1|BJ243429 BJ243429 Y. Ogihara unpublished cDNA... 40 0.17
gb|BJ249481.1|BJ249481 BJ249481 Y. Ogihara unpublished cDNA... 40 0.17
gb|CD872754.1|CD872754 AZO2.121G23F010209 AZO2 Triticum aes... 40 0.17
gb|CD896340.1|CD896340 G174.102I17F010822 G174 Triticum aes... 40 0.17
gb|CK162455.1|CK162455 FGAS015049 Triticum aestivum FGAS: L... 40 0.17
gb|CK195448.1|CK195448 FGAS003887 Triticum aestivum FGAS: L... 40 0.17
>gb|BJ250058.1|BJ250058 BJ250058 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14p02 3', mRNA sequence
Length = 721
Score = 274 bits (138), Expect = 7e-072
Identities = 345/414 (83%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||| |
Sbjct: 540 ggcgcaggggcgcaaggagaggcactcggccggcggcatcgtcatccacaactgcaccat 481
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggccggttcaggaccttcctgggccgccc 120
|| ||||||| |||||||| | | | | ||| || || |||| |||||||| || ||
Sbjct: 480 cgagccgcacgcggagttcaaagaccacatgggcaggctccggacgttcctggggcggcc 421
Query: 121 gtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcatcgaccc 180
||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||||||
Sbjct: 420 gtggaaggagcactcccgcaccctctacatccagtcggagatcggcgacctgatcgaccc 361
Query: 181 gcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgccaaggt 240
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 360 gcaggggtggctgccgtggctcggcgacttcgcgctcagcacctgctactacgccgaggt 301
Query: 241 ggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtatcaagaa 300
||| |||| ||||| || ||| |||||||| | ||||| | ||||| ||| ||||| |
Sbjct: 300 ggacaaccgggggccgggggccgacatgagcaaccgcgtcacgtggaagggcgtcaagca 241
Query: 301 catcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccagggccagca 360
| | ||||||| ||| ||| ||||||||||||| ||||| ||||||||||| |||
Sbjct: 240 cgtgacctaccggcaggcggaagagaagtacaccgtggagaggttcatccaggggaagct 181
Query: 361 ctggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
|||| || | || ||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 180 ctggatctccaagtacggcgtgcccttcatcccggggttgctgccgcaggagca 127
>gb|BJ249964.1|BJ249964 BJ249964 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14j03 3', mRNA sequence
Length = 529
Score = 256 bits (129), Expect = 2e-066
Identities = 344/415 (82%), Gaps = 1/415 (0%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||||| |
Sbjct: 477 ggcgcaggggcgcaagnagaggcactcggccggcggcatcgtcatccacaactgcaccat 418
Query: 61 cg-cgccgcacccggagttcgagaagagcgtcggccggttcaggaccttcctgggccgcc 119
|| ||||||| |||||||| | | | | ||| || || |||| |||||||| || |
Sbjct: 417 cgangccgcacgcggagttcaaagaccacatgggcaggctccggacgttcctggggcggc 358
Query: 120 cgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcatcgacc 179
|||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||||
Sbjct: 357 cgtggaaggagcactcccgcaccctctacatccagtcggagatcggcgacctgatcgacc 298
Query: 180 cgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgccaagg 239
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 297 cgcaggggtggctgccgtggctcggcgacttcgcgctcagcacctgctactacgccgagg 238
Query: 240 tggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtatcaaga 299
|||| |||| ||||| || ||| |||||||| | ||||| | ||||| ||| |||||
Sbjct: 237 tggacaaccgggggccgggggccgacatgagcaaccgcgtcacgtggaagggcgtcaagc 178
Query: 300 acatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccagggccagc 359
|| | ||||||| ||| ||| ||||||||||||| ||||| ||||||||||| |||
Sbjct: 177 acgtgacctaccggcaggcggaagagaagtacaccgtggagaggttcatccaggggaagc 118
Query: 360 actggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
|||| || | || ||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 117 tctggatctccaagtacggcgtgcccttcatcccggggttgctgccgcaggagca 63
>gb|BJ249108.1|BJ249108 BJ249108 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23g24 5', mRNA sequence
Length = 430
Score = 161 bits (81), Expect = 7e-038
Identities = 238/291 (81%), Gaps = 7/291 (2%)
Strand = Plus / Plus
Query: 131 cactcgcgcacgctctacatccagtcggagatcggcgggttcatcgacccgcagggctgg 190
||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 1 cactcccgcaccctctacatccagtcggagatcggcgacctcatcgacccgcaggggtgg 60
Query: 191 ctgccgtggctcggcgacttcggcctcagcacctgctactacgccaaggtggagaa---- 246
|||||||||||||||||||||| |||| |||||||||||||||| ||||||| ||
Sbjct: 61 ctgccgtggctcggcgacttcgcgctcaccacctgctactacgccgaggtggacaaccgg 120
Query: 247 ---ccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtatcaagaacat 303
|| ||||| || ||| |||||||| | ||||| | ||||| ||| ||||| || |
Sbjct: 121 gggccgggggccgggggccgacatgagcaatcgcgtcacgtggaagggcgtcaagcacgt 180
Query: 304 cacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccagggccagcactg 363
|||||||| ||| ||| |||||||||| || ||||| ||||||||||| ||| |||
Sbjct: 181 cacctaccggcaggcgcaagagaagtacactgtggagaggttcatccaggggaagctctg 240
Query: 364 gctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
| || | || ||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 241 gatctccaagtacggcgtgcccttcatcccggggttgctgccgcaggagca 291
>gb|BJ255363.1|BJ255363 BJ255363 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23g24 3', mRNA sequence
Length = 505
Score = 121 bits (61), Expect = 6e-026
Identities = 203/251 (80%), Gaps = 7/251 (2%)
Strand = Plus / Minus
Query: 171 tcatcgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctact 230
|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 501 tcatcgacccgcaggggtggctgccgtggctcggcgacttcgcgctcaccacctgctact 442
Query: 231 acgccaaggtggagaa-------ccacgggcccggcgccaacatgagcgaacgcgtaaag 283
||||| ||||||| || || ||||| || ||| |||||||| | ||||| | |
Sbjct: 441 acgccgaggtggacaaccgggggccgggggccgggggccgacatgagcaatcgcgtcacg 382
Query: 284 tggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagc 343
|||| ||| ||||| || ||||||||| ||| ||| |||||||||| || |||||
Sbjct: 381 tggaagggcgtcaagcacgtcacctaccggcaggcgcaagagaagtacactgtggagagg 322
Query: 344 ttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggggctgctg 403
||||||||||| ||| |||| || | || ||||||||| |||||||||||| |||||
Sbjct: 321 ttcatccaggggaagctctggatctccaagtacggcgtgcccttcatcccggggttgctg 262
Query: 404 ccgcagcagca 414
|||||| ||||
Sbjct: 261 ccgcaggagca 251
>gb|BJ250042.1|BJ250042 BJ250042 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14o03 3', mRNA sequence
Length = 706
Score = 85.7 bits (43), Expect = 3e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagat 162
||||| ||||| ||||| ||||||||| |||| | || ||||||||||| |||||
Sbjct: 482 gacctacctggcgcgcccatggaaggagtactccaggaccatctacatccagaacgagat 423
Query: 163 cggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcctcagcac 222
||||| ||||||||||| |||||||||| |||| ||||||||||| |||| ||
Sbjct: 422 cggcgccttcatcgaccccaagggctggctcgagtggaacggcgacttcgccctcgagac 363
Query: 223 ctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaa 282
| || ||||||| ||||||||||| ||||||||||||| |||||||| | |||| ||
Sbjct: 362 cctcttctacgccgaggtggagaacaccgggcccggcgccgacatgagccagcgcgccaa 303
Query: 283 gtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagag 342
|||| | || ||||||| |||||||| ||||| | || |||||||||||||
Sbjct: 302 gtggggcggcatcaagactgtcacctacgccgacgcgcagaaggagtacaccgtcgaagc 243
Query: 343 cttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggggctgct 402
||||||||||||| |||| | |||| || ||||||||| |||||||||||||| ||
Sbjct: 242 cttcatccagggcgagcagttcatccccaagtacggcgtgcccttcatcccggggctcct 183
Query: 403 gccgcag 409
||||||
Sbjct: 182 cccgcag 176
>gb|BJ252439.1|BJ252439 BJ252439 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24f19 3', mRNA sequence
Length = 668
Score = 85.7 bits (43), Expect = 3e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagat 162
||||| ||||| ||||| ||||||||| |||| | || ||||||||||| |||||
Sbjct: 442 gacctacctggcgcgcccatggaaggagtactccaggaccatctacatccagaacgagat 383
Query: 163 cggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcctcagcac 222
||||| ||||||||||| |||||||||| |||| ||||||||||| |||| ||
Sbjct: 382 cggcgccttcatcgaccccaagggctggctcgagtggaacggcgacttcgccctcgagac 323
Query: 223 ctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaa 282
| || ||||||| ||||||||||| ||||||||||||| |||||||| | |||| ||
Sbjct: 322 cctcttctacgccgaggtggagaacaccgggcccggcgccgacatgagccagcgcgccaa 263
Query: 283 gtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagag 342
|||| | || ||||||| |||||||| ||||| | || |||||||||||||
Sbjct: 262 gtggggcggcatcaagactgtcacctacgccgacgcgcagaaggagtacaccgtcgaagc 203
Query: 343 cttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggggctgct 402
||||||||||||| |||| | |||| || ||||||||| |||||||||||||| ||
Sbjct: 202 cttcatccagggcgagcagttcatccccaagtacggcgtgcccttcatcccggggctcct 143
Query: 403 gccgcag 409
||||||
Sbjct: 142 cccgcag 136
>gb|BE606718.1|BE606718 WHE0907_G06_N11ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0907_G06_N11, mRNA sequence
Length = 479
Score = 61.9 bits (31), Expect = 5e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 98 ttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtcg 157
|||| ||||| ||||||||| ||||||||| || |||||||||| ||| ||||||||||
Sbjct: 339 ttcaagacctacctgggccggccgtggaagcagtactcgcgcaccgtcttcatccagtcg 398
Query: 158 gag 160
|||
Sbjct: 399 gag 401
>gb|CV777756.1|CV777756 FGAS072163 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 819
Score = 61.9 bits (31), Expect = 5e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 98 ttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtcg 157
|||| ||||| ||||||||| ||||||||| || |||||||||| ||| ||||||||||
Sbjct: 697 ttcaagacctacctgggccggccgtggaagcagtactcgcgcaccgtcttcatccagtcg 638
Query: 158 gag 160
|||
Sbjct: 637 gag 635
>gb|CK211986.1|CK211986 FGAS023849 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1075
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 110 ctgggccgcccgtggaaggagcactcgcgcac 141
|||||||||||||||||| || ||||||||||
Sbjct: 552 ctgggccgcccgtggaagcagtactcgcgcac 521
>gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf9k15 3', mRNA sequence
Length = 701
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 105 ccttcctgggccgcccgtggaaggag 130
||||||||||||| ||||||||||||
Sbjct: 537 ccttcctgggccggccgtggaaggag 512
>gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19g21 3', mRNA sequence
Length = 576
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 105 ccttcctgggccgcccgtggaaggag 130
||||||||||||| ||||||||||||
Sbjct: 507 ccttcctgggccggccgtggaaggag 482
>gb|BJ243429.1|BJ243429 BJ243429 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf11b24 5', mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 103 gaccttcctgggccgcccgtggaaggagcactcgcg 138
|||||||||||| || |||||||||| | |||||||
Sbjct: 455 gaccttcctggggcggccgtggaaggcgtactcgcg 490
>gb|BJ249481.1|BJ249481 BJ249481 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf11b24 3', mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactcgcg 138
|||||||||||| || |||||||||| | |||||||
Sbjct: 467 gaccttcctggggcggccgtggaaggcgtactcgcg 432
>gb|CD872754.1|CD872754 AZO2.121G23F010209 AZO2 Triticum aestivum cDNA clone AZO2121G23,
mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 384 ggctcggcgacttcggcctc 403
>gb|CD896340.1|CD896340 G174.102I17F010822 G174 Triticum aestivum cDNA clone G174102I17,
mRNA sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 117 ggctcggcgacttcggcctc 136
>gb|CK162455.1|CK162455 FGAS015049 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1082
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||||| || ||||||||| |||| ||||||
Sbjct: 441 ttcctgggccggccctggaaggagtactcccgcacg 406
>gb|CK195448.1|CK195448 FGAS003887 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 831
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 662 ggctcggcgacttcggcctc 681
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,408
Number of Sequences: 636343
Number of extensions: 137408
Number of successful extensions: 38208
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38165
Number of HSP's gapped (non-prelim): 35
length of query: 606
length of database: 367,240,239
effective HSP length: 19
effective length of query: 587
effective length of database: 355,149,722
effective search space: 208472886814
effective search space used: 208472886814
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)