BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE493730.1|BE493730 WHE0574_F12_L24ZE Triticum monococcu... 135 5e-030
gb|BJ265891.1|BJ265891 BJ265891 Y. Ogihara unpublished cDNA... 135 5e-030
gb|BJ260192.1|BJ260192 BJ260192 Y. Ogihara unpublished cDNA... 133 2e-029
gb|CA704545.1|CA704545 wdk1c.pk011.g17 wdk1c Triticum aesti... 131 7e-029
gb|CK209599.1|CK209599 FGAS021371 Triticum aestivum FGAS: L... 123 2e-026
gb|BE498794.1|BE498794 WHE0966_G09_N18ZS Wheat pre-anthesis... 105 4e-021
gb|CD454064.1|CD454064 WHE0966_G09_N18ZT CS wheat pre-anthe... 105 4e-021
gb|CD918504.1|CD918504 G608.109L01F010907 G608 Triticum aes... 105 4e-021
gb|CA706096.1|CA706096 wdk1c.pk022.h16 wdk1c Triticum aesti... 100 3e-019
gb|CA721153.1|CA721153 wkm2n.pk009.n21 wkm2n Triticum aesti... 80 2e-013
gb|BJ218345.1|BJ218345 BJ218345 Y. Ogihara unpublished cDNA... 50 2e-004
gb|BJ255304.1|BJ255304 BJ255304 Y. Ogihara unpublished cDNA... 50 2e-004
>gb|BE493730.1|BE493730 WHE0574_F12_L24ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0574_F12_L24, mRNA
sequence
Length = 655
Score = 135 bits (68), Expect = 5e-030
Identities = 161/192 (83%)
Strand = Plus / Minus
Query: 523 ctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagcat 582
||||||||| || |||||||||| ||||| | |||||||| ||||||||||| |||||
Sbjct: 300 ctatctgtaattgcagcaggatgggcgaccatgaaccaacttgtcccacaagcatagcat 241
Query: 583 ctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcagaa 642
||||| || ||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 240 ttgccttggcgactgatagtgcgcagtgtagtagttctcgaggcaaccatactggcagaa 181
Query: 643 cttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggcc 702
||||||||| || ||||| |||||| | || ||||||| || || |||||||| ||
Sbjct: 180 cttccagctatgagaatacctgacaggcatggtataattgaatttttcaacccatagccc 121
Query: 703 catgcttacatc 714
||| ||||||||
Sbjct: 120 catacttacatc 109
>gb|BJ265891.1|BJ265891 BJ265891 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh23o06 3', mRNA sequence
Length = 607
Score = 135 bits (68), Expect = 5e-030
Identities = 161/192 (83%)
Strand = Plus / Plus
Query: 523 ctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagcat 582
|||||| || || |||||||||| ||||||| |||||||| ||||||||||| |||||
Sbjct: 334 ctatctataattgcagcaggatgggcgaccacgaaccaacttgtcccacaagcatagcat 393
Query: 583 ctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcagaa 642
||||| || ||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 394 ttgccttggcgactgatagtgcgcagtgtagtagttctcgaggcaaccatactggcagaa 453
Query: 643 cttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggcc 702
||||||||| || ||||| |||||| | || ||||||| || || |||||||| ||
Sbjct: 454 cttccagctatgagaatacctgacaggcatggtataattgaatttttcaacccatagccc 513
Query: 703 catgcttacatc 714
||| ||||||||
Sbjct: 514 catacttacatc 525
>gb|BJ260192.1|BJ260192 BJ260192 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh23o06 5', mRNA sequence
Length = 588
Score = 133 bits (67), Expect = 2e-029
Identities = 151/179 (84%)
Strand = Plus / Minus
Query: 536 cagcaggatgcctgaccacggaccaacttatcccacaagcacagcatctgcctgggtgac 595
|||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| || |||
Sbjct: 585 cagcaggatgggcgaccacgaaccaacttgtcccacaagcatagcatttgccttggcgac 526
Query: 596 tgatagtgggccgtgtagtagttctccaggcaaccgtactggcagaacttccagctgtgg 655
|||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 525 tgatagtgcgcagtgtagtagttctcgaggcaaccatactggcagaacttccagctatga 466
Query: 656 gaatattggacaggatttgttgaattgaacttctcgacccataggcccatgcttacatc 714
||||| |||||| | || ||||||| || || |||||||| ||||| ||||||||
Sbjct: 465 gaatacctgacaggcatggtataattgaatttttcaacccatagccccatacttacatc 407
>gb|CA704545.1|CA704545 wdk1c.pk011.g17 wdk1c Triticum aestivum cDNA clone wdk1c.pk011.g17
5' end, mRNA sequence
Length = 459
Score = 131 bits (66), Expect = 7e-029
Identities = 120/138 (86%)
Strand = Plus / Minus
Query: 523 ctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagcat 582
|||||| || || |||||||||| ||||||| |||||||| ||||||||||| |||||
Sbjct: 158 ctatctataattgcagcaggatgggcgaccacgaaccaacttgtcccacaagcatagcat 99
Query: 583 ctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcagaa 642
||||| || ||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 98 ttgccttggcgactgatagtgcgcagtgtagtagttctcgaggcaaccatactggcagaa 39
Query: 643 cttccagctgtgggaata 660
||||||||| || |||||
Sbjct: 38 cttccagctatgagaata 21
>gb|CK209599.1|CK209599 FGAS021371 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1130
Score = 123 bits (62), Expect = 2e-026
Identities = 140/166 (84%)
Strand = Plus / Minus
Query: 549 gaccacggaccaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccg 608
||||||| |||||||| ||||||||||| ||||| |||| || ||||||||||| || |
Sbjct: 780 gaccacgaaccaacttgtcccacaagcatagcattcgccttggcgactgatagtgcgcag 721
Query: 609 tgtagtagttctccaggcaaccgtactggcagaacttccagctgtgggaatattggacag 668
||||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 720 tgtagtagttctcgaggcaaccatactggcagaacttccagctatgagaatacctgacag 661
Query: 669 gatttgttgaattgaacttctcgacccataggcccatgcttacatc 714
| | || ||||||| || || |||||||| ||||| ||||||||
Sbjct: 660 gcatggtataattgaatttttcaacccatagccccatacttacatc 615
>gb|BE498794.1|BE498794 WHE0966_G09_N18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0966_G09_N18, mRNA sequence
Length = 462
Score = 105 bits (53), Expect = 4e-021
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
|||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| |||||
Sbjct: 196 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcacccgta 137
Query: 634 ctggcagaacttccagctgtg 654
|||||||||||||||||||||
Sbjct: 136 ctggcagaacttccagctgtg 116
>gb|CD454064.1|CD454064 WHE0966_G09_N18ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0966_G09_N18, mRNA sequence
Length = 726
Score = 105 bits (53), Expect = 4e-021
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
|||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| |||||
Sbjct: 616 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcacccgta 675
Query: 634 ctggcagaacttccagctgtg 654
|||||||||||||||||||||
Sbjct: 676 ctggcagaacttccagctgtg 696
>gb|CD918504.1|CD918504 G608.109L01F010907 G608 Triticum aestivum cDNA clone G608109L01,
mRNA sequence
Length = 710
Score = 105 bits (53), Expect = 4e-021
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
|||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| |||||
Sbjct: 154 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcacccgta 95
Query: 634 ctggcagaacttccagctgtg 654
|||||||||||||||||||||
Sbjct: 94 ctggcagaacttccagctgtg 74
>gb|CA706096.1|CA706096 wdk1c.pk022.h16 wdk1c Triticum aestivum cDNA clone wdk1c.pk022.h16
5' end, mRNA sequence
Length = 431
Score = 99.6 bits (50), Expect = 3e-019
Identities = 126/150 (84%), Gaps = 1/150 (0%)
Strand = Plus / Minus
Query: 566 tcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttc-tccag 624
||||||||||| ||||| ||||| || ||||||||||| || |||||||||||| || ||
Sbjct: 394 tcccacaagcatagcatttgccttggcgactgatagtgcgcagtgtagtagttcttcgag 335
Query: 625 gcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattgaa 684
|||||| |||||||||||||||||||| || ||||| |||||| | || |||||||
Sbjct: 334 gcaaccatactggcagaacttccagctatgagaatacctgacaggcatggtataattgaa 275
Query: 685 cttctcgacccataggcccatgcttacatc 714
|| || |||||||| ||||| ||||||||
Sbjct: 274 tttttcaacccatagccccatacttacatc 245
>gb|CA721153.1|CA721153 wkm2n.pk009.n21 wkm2n Triticum aestivum cDNA clone wkm2n.pk009.n21
5' end, mRNA sequence
Length = 474
Score = 79.8 bits (40), Expect = 2e-013
Identities = 80/92 (86%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 557 accaacttatcccacaagcacagcatctgcctgggtgactgatagtg-ggccgtgtagta 615
|||||||| |||| |||||| ||||| ||||| | ||||| ||||| ||| ||||||||
Sbjct: 452 accaacttgtcccccaagcatagcatttgccttgcggactgttagtgcggcagtgtagta 393
Query: 616 gttctccaggcaaccgtactggcagaacttcc 647
|||||| |||||||| ||||||||||||||||
Sbjct: 392 gttctcgaggcaaccatactggcagaacttcc 361
>gb|BJ218345.1|BJ218345 BJ218345 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh37e08 3', mRNA sequence
Length = 571
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtg 610
|||||||||||||||||| ||||| ||||| ||||||
Sbjct: 532 gcacagcatctgcctgggggactggtagtgcgccgtg 568
>gb|BJ255304.1|BJ255304 BJ255304 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23d05 3', mRNA sequence
Length = 618
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtg 610
|||||||||||||||||| ||||| ||||| ||||||
Sbjct: 578 gcacagcatctgcctgggggactggtagtgcgccgtg 614
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,527
Number of Sequences: 636343
Number of extensions: 114527
Number of successful extensions: 31184
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31161
Number of HSP's gapped (non-prelim): 22
length of query: 725
length of database: 367,240,239
effective HSP length: 19
effective length of query: 706
effective length of database: 355,149,722
effective search space: 250735703732
effective search space used: 250735703732
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)