BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3748389.2.1
         (663 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK152920.1|CK152920  FGAS035999 Triticum aestivum FGAS: T...    48   8e-004
gb|BE517944.1|BE517944  WHE0804_A03_B06ZS Wheat vernalized c...    42   0.048
gb|BQ166017.1|BQ166017  WHE0804_A03_B06ZT Wheat vernalized c...    42   0.048
gb|CK163163.1|CK163163  FGAS015781 Triticum aestivum FGAS: L...    42   0.048
gb|CV779558.1|CV779558  FGAS073967 Triticum aestivum FGAS: L...    42   0.048

>gb|CK152920.1|CK152920 FGAS035999 Triticum aestivum FGAS: TaLt3 Triticum aestivum cDNA,
           mRNA sequence
          Length = 925

 Score = 48.1 bits (24), Expect = 8e-004
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 431 ggatgctctgaggacggccatggc 454
           ||||||||||||||||||||||||
Sbjct: 202 ggatgctctgaggacggccatggc 179



>gb|BE517944.1|BE517944 WHE0804_A03_B06ZS Wheat vernalized crown cDNA library Triticum
           aestivum cDNA clone WHE0804_A03_B06, mRNA sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 76  tggaggcttccggcctgccgttcctctgg 104
           ||||||| ||||||| |||||||||||||
Sbjct: 465 tggaggcgtccggcccgccgttcctctgg 493



>gb|BQ166017.1|BQ166017 WHE0804_A03_B06ZT Wheat vernalized crown cDNA library Triticum
           aestivum cDNA clone WHE0804_A03_B06, mRNA sequence
          Length = 430

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 76  tggaggcttccggcctgccgttcctctgg 104
           ||||||| ||||||| |||||||||||||
Sbjct: 341 tggaggcgtccggcccgccgttcctctgg 313



>gb|CK163163.1|CK163163 FGAS015781 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
           aestivum cDNA, mRNA sequence
          Length = 1089

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 1   gctccgtcgtgtacgcggccttcggcagc 29
           |||||||||| |||| |||||||||||||
Sbjct: 460 gctccgtcgtctacgtggccttcggcagc 488



>gb|CV779558.1|CV779558 FGAS073967 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
           aestivum cDNA, mRNA sequence
          Length = 865

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 1   gctccgtcgtgtacgcggccttcggcagc 29
           |||||||||||||||||  ||||||||||
Sbjct: 478 gctccgtcgtgtacgcgaacttcggcagc 506



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,266
Number of Sequences: 636343
Number of extensions: 135266
Number of successful extensions: 39239
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39234
Number of HSP's gapped (non-prelim): 5
length of query: 663
length of database: 367,240,239
effective HSP length: 19
effective length of query: 644
effective length of database: 355,149,722
effective search space: 228716420968
effective search space used: 228716420968
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)