BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA498342.1|CA498342 WHE3242_C04_E08ZT Wheat meiotic anth... 111 5e-023
gb|CA500842.1|CA500842 WHE3201_F07_K13ZT Wheat meiotic anth... 82 4e-014
gb|CA500296.1|CA500296 WHE4017_G02_M03ZT Wheat meiotic anth... 56 3e-006
gb|CN010627.1|CN010627 WHE3874_B10_D20ZS Wheat Fusarium gra... 56 3e-006
gb|BT009477.1| Triticum aestivum clone wr1.pk0034.f4:fis, f... 56 3e-006
gb|BI751885.1|BI751885 Ta01_15h09_R Ta01_AAFC_ECORC_Fusariu... 48 6e-004
gb|CA615118.1|CA615118 wr1.pk176.h9 wr1 Triticum aestivum c... 48 6e-004
gb|CA643818.1|CA643818 wre1n.pk0080.d4 wre1n Triticum aesti... 48 6e-004
gb|CD914224.1|CD914224 G550.121D20R010920 G550 Triticum aes... 48 6e-004
gb|AJ610858.1|AJ610858 AJ610858 Triticum turgidum subsp. du... 46 0.002
gb|BE445333.1|BE445333 WHE1134_C02_E04ZS Wheat etiolated se... 44 0.010
gb|BF200731.1|BF200731 WHE0821-0824_M03_M03ZS Wheat vernali... 44 0.010
gb|CA701836.1|CA701836 wkm2c.pk006.j3 wkm2c Triticum aestiv... 44 0.010
gb|CD935054.1|CD935054 OV.002N07F010109 OV Triticum aestivu... 44 0.010
gb|CV762737.1|CV762737 FGAS057126 Triticum aestivum FGAS: L... 44 0.010
gb|BJ241082.1|BJ241082 BJ241082 Y. Ogihara unpublished cDNA... 42 0.038
gb|BJ315555.1|BJ315555 BJ315555 Y. Ogihara unpublished cDNA... 42 0.038
gb|BQ240993.1|BQ240993 TaE05010D04R TaE05 Triticum aestivum... 42 0.038
gb|CD921675.1|CD921675 G750.001I10F010305 G750 Triticum aes... 42 0.038
gb|CN009570.1|CN009570 WHE3860_C07_E14ZS Wheat Fusarium gra... 42 0.038
gb|BE493455.1|BE493455 WHE0580_C10_C10ZE Triticum monococcu... 40 0.15
gb|BJ320101.1|BJ320101 BJ320101 Y. Ogihara unpublished cDNA... 40 0.15
>gb|CA498342.1|CA498342 WHE3242_C04_E08ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3242_C04_E08, mRNA sequence
Length = 647
Score = 111 bits (56), Expect = 5e-023
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgctagggccaagggaaca 90
||||||||||||||||| |||||||||||| | || | ||||||| || ||||||||||
Sbjct: 519 atctgccacccaacagagtttgatttcttcctctgtagccatgctgggatcaagggaaca 460
Query: 91 agccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcagatgctctg 150
||||||||| | |||||||| ||||| |||||||||||||| |||| || |||| |||
Sbjct: 459 agccgtcctgcacattaccacgtgctgcgagatgacaacaacttcagtgctgatgacctg 400
Query: 151 cagtctct 158
||||||||
Sbjct: 399 cagtctct 392
>gb|CA500842.1|CA500842 WHE3201_F07_K13ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3201_F07_K13, mRNA sequence
Length = 208
Score = 81.8 bits (41), Expect = 4e-014
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgctagggccaagggaaca 90
|||||||||||||||||||||||||||||| | || | ||||||| || ||||||||||
Sbjct: 135 atctgccacccaacagaatttgatttcttcctctgtagccatgctgggatcaagggaaca 194
Query: 91 agccgtcct 99
|||||||||
Sbjct: 195 agccgtcct 203
>gb|CA500296.1|CA500296 WHE4017_G02_M03ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4017_G02_M03, mRNA sequence
Length = 606
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgc 74
||||||||||| ||||| |||||||||||| |||||| ||||||
Sbjct: 383 atctgccaccctacagagtttgatttcttcctgtgcagccatgc 426
>gb|CN010627.1|CN010627 WHE3874_B10_D20ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3874_B10_D20,
mRNA sequence
Length = 709
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgc 74
||||||||||| ||||| |||||||||||| |||||| ||||||
Sbjct: 220 atctgccaccctacagagtttgatttcttcctgtgcagccatgc 263
>gb|BT009477.1| Triticum aestivum clone wr1.pk0034.f4:fis, full insert mRNA sequence
Length = 2511
Score = 56.0 bits (28), Expect = 3e-006
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| ||||||||||||| || | ||||| ||||| || ||||| |
Sbjct: 1863 agggaacaagccgccctgcgcattaccatgtcctttgggatgagaacaattttaccgcgg 1922
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| | ||||| |||| || | |||||||||||||
Sbjct: 1923 atggtttgcagactctcacgaacaacttgtgctaca 1958
>gb|BI751885.1|BI751885 Ta01_15h09_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_15h09, mRNA
sequence
Length = 732
Score = 48.1 bits (24), Expect = 6e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| ||||||||||||| || | ||||| ||||| || ||||| |
Sbjct: 71 agggaacaagccgccctgcgcattaccatgtyctttgggatgagaacaattttaccgcgg 130
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
| | | ||||| |||| || | |||||||||||||
Sbjct: 131 acggtttgcagactctcacgaacaacttgtgctaca 166
>gb|CA615118.1|CA615118 wr1.pk176.h9 wr1 Triticum aestivum cDNA clone wr1.pk176.h9 5' end,
mRNA sequence
Length = 500
Score = 48.1 bits (24), Expect = 6e-004
Identities = 79/96 (82%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| ||||||||||||| || | ||||| ||||| || ||||| |
Sbjct: 352 agggaacaagccgccctgcgcattaccatgtcctttgggatgagaacaa-tttaccgcgg 410
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| | ||||| |||| || | |||||||||||||
Sbjct: 411 atggtttgcagactctcacgaacaacttgtgctaca 446
>gb|CA643818.1|CA643818 wre1n.pk0080.d4 wre1n Triticum aestivum cDNA clone wre1n.pk0080.d4
5' end, mRNA sequence
Length = 482
Score = 48.1 bits (24), Expect = 6e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| ||||||||||||| || | ||||| ||||| || ||||| |
Sbjct: 131 agggaacaagccgccctgcgcattaccatgtcctttgggatgagaacaattttaccgcgg 190
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
| | | ||||| |||| || | |||||||||||||
Sbjct: 191 acggtttgcagactctcacgaacaacttgtgctaca 226
>gb|CD914224.1|CD914224 G550.121D20R010920 G550 Triticum aestivum cDNA clone G550121D20,
mRNA sequence
Length = 529
Score = 48.1 bits (24), Expect = 6e-004
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| ||||||||||||| || | ||||| ||||| || ||||| |
Sbjct: 397 agggaacaagccgccctgcgcattaccatgtcctttgggatgagaacaattttaccgcgg 338
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
| | | ||||| |||| || | |||||||||||||
Sbjct: 337 acggtttgcagactctcacgaacaacttgtgctaca 302
>gb|AJ610858.1|AJ610858 AJ610858 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 03637R, mRNA
sequence
Length = 692
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgt 113
||||||||||||| ||| |||||||||||||
Sbjct: 168 agggaacaagccgccctgcgcattaccatgt 198
>gb|BE445333.1|BE445333 WHE1134_C02_E04ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1134_C02_E04,
mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.010
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 10 ggcaccgtagttgataataatatctgccacccaacagaatttgatttcttcgtgtgcatc 69
|||||||| |||||| || |||||||| || ||||||||||| |||| | |||||| |
Sbjct: 209 ggcaccgttgttgattcgaagatctgccatccgacagaatttgacttctacttgtgcagc 268
Query: 70 catgct 75
||||||
Sbjct: 269 catgct 274
>gb|BF200731.1|BF200731 WHE0821-0824_M03_M03ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0821-0824_M03_M03, mRNA sequence
Length = 440
Score = 44.1 bits (22), Expect = 0.010
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 10 ggcaccgtagttgataataatatctgccacccaacagaatttgatttcttcgtgtgcatc 69
|||||||| |||||| || |||||||| || ||||||||||| |||| | |||||| |
Sbjct: 174 ggcaccgttgttgattcgaagatctgccatccgacagaatttgacttctacttgtgcagc 233
Query: 70 catgct 75
||||||
Sbjct: 234 catgct 239
>gb|CA701836.1|CA701836 wkm2c.pk006.j3 wkm2c Triticum aestivum cDNA clone wkm2c.pk006.j3 5'
end, mRNA sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.010
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 10 ggcaccgtagttgataataatatctgccacccaacagaatttgatttcttcgtgtgcatc 69
|||||||| |||||| || |||||||| || ||||||||||| |||| | |||||| |
Sbjct: 174 ggcaccgttgttgattcgaagatctgccatccgacagaatttgacttctacttgtgcagc 233
Query: 70 catgct 75
||||||
Sbjct: 234 catgct 239
>gb|CD935054.1|CD935054 OV.002N07F010109 OV Triticum aestivum cDNA clone OV002N07, mRNA
sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.010
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 10 ggcaccgtagttgataataatatctgccacccaacagaatttgatttcttcgtgtgcatc 69
|||||||| |||||| || |||||||| || ||||||||||| |||| | |||||| |
Sbjct: 1 ggcaccgttgttgatttgaagatctgccatccgacagaatttgacttctacttgtgcagc 60
Query: 70 catgct 75
||||||
Sbjct: 61 catgct 66
>gb|CV762737.1|CV762737 FGAS057126 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 850
Score = 44.1 bits (22), Expect = 0.010
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 10 ggcaccgtagttgataataatatctgccacccaacagaatttgatttcttcgtgtgcatc 69
|||||||| |||||| || |||||||| || ||||||||||| |||| | |||||| |
Sbjct: 481 ggcaccgttgttgattcgaagatctgccatccgacagaatttgacttctacttgtgcagc 540
Query: 70 catgct 75
||||||
Sbjct: 541 catgct 546
>gb|BJ241082.1|BJ241082 BJ241082 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe18l10 3', mRNA sequence
Length = 580
Score = 42.1 bits (21), Expect = 0.038
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgct 75
|||||||| || ||||||||||| |||| | |||||| |||||||
Sbjct: 574 atctgccatccgacagaatttgacttctacttgtgcagccatgct 530
>gb|BJ315555.1|BJ315555 BJ315555 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf19a10 5', mRNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.038
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgct 75
|||||||| || || ||||||||||||| | |||||| |||||||
Sbjct: 446 atctgccatccgacggaatttgatttctacttgtgcagccatgct 490
>gb|BQ240993.1|BQ240993 TaE05010D04R TaE05 Triticum aestivum cDNA clone TaE05010D04R, mRNA
sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.038
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgct 75
|||||||| || || ||||||||||||| | |||||| |||||||
Sbjct: 490 atctgccatccgacggaatttgatttctacttgtgcagccatgct 534
>gb|CD921675.1|CD921675 G750.001I10F010305 G750 Triticum aestivum cDNA clone G750001I10,
mRNA sequence
Length = 702
Score = 42.1 bits (21), Expect = 0.038
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgct 75
|||||||| || || ||||||||||||| | |||||| |||||||
Sbjct: 113 atctgccatccgacggaatttgatttctacttgtgcagccatgct 157
>gb|CN009570.1|CN009570 WHE3860_C07_E14ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3860_C07_E14,
mRNA sequence
Length = 733
Score = 42.1 bits (21), Expect = 0.038
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgct 75
|||||||| || || ||||||||||||| | |||||| |||||||
Sbjct: 59 atctgccatccgacggaatttgatttctacttgtgcagccatgct 103
>gb|BE493455.1|BE493455 WHE0580_C10_C10ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0580_C10_C10, mRNA
sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.15
Identities = 77/96 (80%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||||||| | ||||| || || ||| | || || ||||| ||||| || |
Sbjct: 157 agggaacaagccgtcctgctcattatcacgttctatgggacgagaacaaattcactgctg 216
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||| |||||||| | |||||||||||||
Sbjct: 217 atgagttgcaaactctaacaaacaacttgtgctaca 252
>gb|BJ320101.1|BJ320101 BJ320101 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf13h16 3', mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.15
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||||||| | ||||| || || ||| | || || ||||| ||||| || |
Sbjct: 593 agggaacaagccgtcctgctcattatcacgttctatgggacgagaacaaattcactgctg 534
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||| |||||||| | |||||||||||||
Sbjct: 533 atgagttgcaaactctaacaaacaacttgtgctaca 498
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,815
Number of Sequences: 636343
Number of extensions: 88815
Number of successful extensions: 23528
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23477
Number of HSP's gapped (non-prelim): 47
length of query: 527
length of database: 367,240,239
effective HSP length: 19
effective length of query: 508
effective length of database: 355,149,722
effective search space: 180416058776
effective search space used: 180416058776
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)