BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696657.2.1
(1531 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ253848.1|BJ253848 BJ253848 Y. Ogihara unpublished cDNA... 76 8e-012
gb|BJ248931.1|BJ248931 BJ248931 Y. Ogihara unpublished cDNA... 70 5e-010
gb|CD454818.1|CD454818 WHE3454_A04_B08ZT CS wheat pre-anthe... 66 8e-009
gb|BF473363.1|BF473363 WHE0923_F04_L07ZS Wheat 5-15 DAP spi... 64 3e-008
gb|AL810175.1|AL810175 AL810175 d:15 Triticum aestivum cDNA... 64 3e-008
gb|BJ244077.1|BJ244077 BJ244077 Y. Ogihara unpublished cDNA... 62 1e-007
gb|BJ247485.1|BJ247485 BJ247485 Y. Ogihara unpublished cDNA... 62 1e-007
gb|BJ253558.1|BJ253558 BJ253558 Y. Ogihara unpublished cDNA... 56 7e-006
gb|BE413623.1|BE413623 SCU001.C10.R990714 ITEC SCU Wheat En... 54 3e-005
gb|BJ245473.1|BJ245473 BJ245473 Y. Ogihara unpublished cDNA... 54 3e-005
gb|BJ251356.1|BJ251356 BJ251356 Y. Ogihara unpublished cDNA... 54 3e-005
gb|CD888683.1|CD888683 G118.108O04R010925 G118 Triticum aes... 54 3e-005
gb|CK207586.1|CK207586 FGAS019223 Triticum aestivum FGAS: L... 54 3e-005
gb|DR736658.1|DR736658 FGAS082028 Triticum aestivum FGAS: L... 54 3e-005
gb|BE404485.1|BE404485 WHE0442_H04_O08ZS Wheat etiolated se... 48 0.002
gb|BF483450.1|BF483450 WHE2334_A09_A18ZS Wheat pre-anthesis... 48 0.002
gb|BJ226169.1|BJ226169 BJ226169 Y. Ogihara unpublished cDNA... 48 0.002
gb|BJ231070.1|BJ231070 BJ231070 Y. Ogihara unpublished cDNA... 48 0.002
gb|CD868569.1|CD868569 AZO2.109E15F001114 AZO2 Triticum aes... 48 0.002
gb|CD868596.1|CD868596 AZO2.109F15R010517 AZO2 Triticum aes... 48 0.002
gb|CD935721.1|CD935721 OV.102E15F010202 OV Triticum aestivu... 48 0.002
gb|CD935856.1|CD935856 OV.102K13F010202 OV Triticum aestivu... 48 0.002
gb|BJ246629.1|BJ246629 BJ246629 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ249502.1|BJ249502 BJ249502 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ252567.1|BJ252567 BJ252567 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ278246.1|BJ278246 BJ278246 Y. Ogihara unpublished cDNA... 46 0.007
gb|BJ283298.1|BJ283298 BJ283298 Y. Ogihara unpublished cDNA... 46 0.007
gb|BQ606326.1|BQ606326 BRY_2178 wheat EST endosperm library... 46 0.007
gb|CA741798.1|CA741798 wia1c.pk003.h2 wia1c Triticum aestiv... 46 0.007
gb|CD454470.1|CD454470 WHE2319_C03_F05ZT CS wheat pre-anthe... 46 0.007
gb|CD896286.1|CD896286 G174.102G03F010822 G174 Triticum aes... 46 0.007
gb|AL811115.1|AL811115 AL811115 d:37 Triticum aestivum cDNA... 46 0.007
gb|CA622651.1|CA622651 wl1n.pk0098.d7 wl1n Triticum aestivu... 44 0.028
gb|CA622772.1|CA622772 wl1n.pk0099.d2 wl1n Triticum aestivu... 44 0.028
gb|BQ167136.1|BQ167136 WHE0056_A08_A16ZK Cheyenne wheat end... 44 0.028
gb|BE498455.1|BE498455 WHE0967_F01_K01ZS Wheat pre-anthesis... 42 0.11
gb|BJ247735.1|BJ247735 BJ247735 Y. Ogihara unpublished cDNA... 42 0.11
gb|BJ249864.1|BJ249864 BJ249864 Y. Ogihara unpublished cDNA... 42 0.11
gb|BQ902457.1|BQ902457 Ta02_02g09_R Ta02_AAFC_ECORC_Fusariu... 42 0.11
gb|BE498146.1|BE498146 WHE0954_H09_P18ZS Wheat pre-anthesis... 40 0.44
gb|BI479704.1|BI479704 WHE3451_B04_C07ZS Wheat pre-anthesis... 40 0.44
gb|BJ266660.1|BJ266660 BJ266660 Y. Ogihara unpublished cDNA... 40 0.44
gb|CN008087.1|CN008087 WHE2637_B12_C23ZE Wheat Fusarium gra... 40 0.44
gb|DR734786.1|DR734786 FGAS080540 Triticum aestivum FGAS: L... 40 0.44
>gb|BJ253848.1|BJ253848 BJ253848 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3i08 3', mRNA sequence
Length = 583
Score = 75.8 bits (38), Expect = 8e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 396 tctccgagcagagcaggctgatggcctcgggcgtggacgacgtgccggtgatgttgcgga 455
|||| |||||||||||||||| ||||||||| ||||| || |||||||||||||| ||
Sbjct: 384 tctcggagcagagcaggctgacggcctcgggggtggaggaagtgccggtgatgtttttga 443
Query: 456 acgtgacgtccttgacgg 473
||| |||||||||||||
Sbjct: 444 acgaaacgtccttgacgg 461
>gb|BJ248931.1|BJ248931 BJ248931 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8k17 5', mRNA sequence
Length = 556
Score = 69.9 bits (35), Expect = 5e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 685 cacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggcc 744
||||||||||||||||||||| || || |||| ||| ||||||||||| || ||||||||
Sbjct: 74 cacgtccttctcgtccttgtaccgccccaggctgcccacgctgatgccgtggccggggcc 15
Query: 745 gca 747
|||
Sbjct: 14 gca 12
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| ||||||||| |||||| |||||
Sbjct: 441 tgcagacggccatggtcttgttgttcgtgccggtgtact 403
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 230 ctggtcgatgacgatggggt 211
>gb|CD454818.1|CD454818 WHE3454_A04_B08ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3454_A04_B08, mRNA sequence
Length = 710
Score = 65.9 bits (33), Expect = 8e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 401 gagcagagcaggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtg 460
|||||||||||||||| ||||||||| |||| || |||||||||||||| ||| ||
Sbjct: 509 gagcagagcaggctgacggcctcgggggtggcggaggtgccggtgatgtttttgaaggta 568
Query: 461 acgtccttgacgg 473
|||||||||||||
Sbjct: 569 acgtccttgacgg 581
Score = 52.0 bits (26), Expect = 1e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 289 tcccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggc 348
|||| |||||||| ||||| ||| | ||||||| | ||| || ||||||||||||||||
Sbjct: 397 tcccgtggcggtgaccttgacgtgggtgcagacagtcatagtcttgttgttcttgccgga 456
Query: 349 gtactc 354
||||||
Sbjct: 457 gtactc 462
>gb|BF473363.1|BF473363 WHE0923_F04_L07ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0923_F04_L07, mRNA sequence
Length = 545
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcga 822
||||||||||||||||||||||||||||||||
Sbjct: 361 gagacgcagtcgtcgccggtgccgatggtcga 330
>gb|AL810175.1|AL810175 AL810175 d:15 Triticum aestivum cDNA clone E01_d15_plate_7, mRNA
sequence
Length = 566
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcga 822
||||||||||||||||||||||||||||||||
Sbjct: 162 gagacgcagtcgtcgccggtgccgatggtcga 131
>gb|BJ244077.1|BJ244077 BJ244077 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14b21 5', mRNA sequence
Length = 642
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 685 cacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggcc 744
||||||||||||||||||||| || || |||| ||| |||||||| || || ||||||||
Sbjct: 488 cacgtccttctcgtccttgtaccgccccaggctgcccacgctgatcccgtggccggggcc 429
Query: 745 gca 747
|||
Sbjct: 428 gca 426
>gb|BJ247485.1|BJ247485 BJ247485 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2g18 5', mRNA sequence
Length = 600
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 685 cacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggcc 744
||||||||||||||||||||| || || |||| ||| |||||||| || || ||||||||
Sbjct: 515 cacgtccttctcgtccttgtaccgccccaggctgcccacgctgatcccgtggccggggcc 456
Query: 745 gca 747
|||
Sbjct: 455 gca 453
>gb|BJ253558.1|BJ253558 BJ253558 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2g18 3', mRNA sequence
Length = 634
Score = 56.0 bits (28), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 685 cacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggcc 744
||||| ||||||||||||||| || || |||| ||| |||||||| || || ||||||||
Sbjct: 535 cacgtncttctcgtccttgtaccgccccaggctgcccacgctgatcccgtggccggggcc 594
Query: 745 gca 747
|||
Sbjct: 595 gca 597
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| |||||||| |||||| |||||
Sbjct: 168 tgcagacggccatggtcttgttgttggtgccggtgtact 206
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 379 ctggtcgatgacgatggggt 398
>gb|BE413623.1|BE413623 SCU001.C10.R990714 ITEC SCU Wheat Endosperm Library Triticum
aestivum cDNA clone SCU001.C10, mRNA sequence
Length = 758
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggttggccac 555
|||||||||||||||||||||||||||
Sbjct: 492 ctggtcgatgacgatggggttggccac 466
>gb|BJ245473.1|BJ245473 BJ245473 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19m10 5', mRNA sequence
Length = 553
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| ||||||||| |||||| |||||
Sbjct: 308 tgcagacggccatggtcttgttgttcgtgccggtgtact 270
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 97 ctggtcgatgacgatggggt 78
>gb|BJ251356.1|BJ251356 BJ251356 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19m10 3', mRNA sequence
Length = 531
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| ||||||||| |||||| |||||
Sbjct: 218 tgcagacggccatggtcttgttgttcgtgccggtgtact 256
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 429 ctggtcgatgacgatggggt 448
>gb|CD888683.1|CD888683 G118.108O04R010925 G118 Triticum aestivum cDNA clone G118108O04,
mRNA sequence
Length = 731
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggttggccac 555
|||||||||||||||||||||||||||
Sbjct: 435 ctggtcgatgacgatggggttggccac 461
>gb|CK207586.1|CK207586 FGAS019223 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1119
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggttggccac 555
|||||||||||||||||||||||||||
Sbjct: 619 ctggtcgatgacgatggggttggccac 593
>gb|DR736658.1|DR736658 FGAS082028 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1118
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggttggccac 555
|||||||||||||||||||||||||||
Sbjct: 481 ctggtcgatgacgatggggttggccac 507
>gb|BE404485.1|BE404485 WHE0442_H04_O08ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0442_H04_O08, mRNA
sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 520 gcagaagtactggtcgatgacgatggggttgg 551
|||| ||||||||||||||| |||||||||||
Sbjct: 471 gcagtagtactggtcgatgatgatggggttgg 440
>gb|BF483450.1|BF483450 WHE2334_A09_A18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2334_A09_A18, mRNA sequence
Length = 488
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 794 acgcagtcgtcgccggtgccgatg 817
||||||||||||||||||||||||
Sbjct: 217 acgcagtcgtcgccggtgccgatg 194
>gb|BJ226169.1|BJ226169 BJ226169 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25f11 5', mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttg 550
||||| ||||||||||||||| ||||||||||
Sbjct: 95 ggcagtagtactggtcgatgatgatggggttg 64
>gb|BJ231070.1|BJ231070 BJ231070 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25f11 3', mRNA sequence
Length = 551
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 519 ggcagaagtactggtcgatgacgatggggttg 550
||||| ||||||||||||||| ||||||||||
Sbjct: 457 ggcagtagtactggtcgatgatgatggggttg 488
>gb|CD868569.1|CD868569 AZO2.109E15F001114 AZO2 Triticum aestivum cDNA clone AZO2109E15,
mRNA sequence
Length = 541
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 520 gcagaagtactggtcgatgacgatggggttgg 551
|||| ||||||||||||||| |||||||||||
Sbjct: 299 gcagtagtactggtcgatgatgatggggttgg 268
Score = 40.1 bits (20), Expect = 0.44
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 625 cttgatgcgcacgccgttggtggtgttcttgagcacgcag 664
|||||| || ||||||||||||||||| |||||| ||||
Sbjct: 200 cttgatccggacgccgttggtggtgttggtgagcaagcag 161
>gb|CD868596.1|CD868596 AZO2.109F15R010517 AZO2 Triticum aestivum cDNA clone AZO2109F15,
mRNA sequence
Length = 618
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 520 gcagaagtactggtcgatgacgatggggttgg 551
|||| ||||||||||||||| |||||||||||
Sbjct: 436 gcagtagtactggtcgatgatgatggggttgg 467
>gb|CD935721.1|CD935721 OV.102E15F010202 OV Triticum aestivum cDNA clone OV102E15, mRNA
sequence
Length = 693
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 794 acgcagtcgtcgccggtgccgatg 817
||||||||||||||||||||||||
Sbjct: 85 acgcagtcgtcgccggtgccgatg 62
>gb|CD935856.1|CD935856 OV.102K13F010202 OV Triticum aestivum cDNA clone OV102K13, mRNA
sequence
Length = 695
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 794 acgcagtcgtcgccggtgccgatg 817
||||||||||||||||||||||||
Sbjct: 85 acgcagtcgtcgccggtgccgatg 62
>gb|BJ246629.1|BJ246629 BJ246629 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24o17 5', mRNA sequence
Length = 656
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| |||||||| |||||| |||||
Sbjct: 409 tgcagacggccatggtcttgttgttggtgccggtgtact 371
Score = 44.1 bits (22), Expect = 0.028
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 685 cacgtccttctcgtccttgtagcggcctaggcagccgacgct 726
||||||||||||||||||||| || || |||| ||| |||||
Sbjct: 42 cacgtccttctcgtccttgtaccgccccaggctgcccacgct 1
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 198 ctggtcgatgacgatggggt 179
>gb|BJ249502.1|BJ249502 BJ249502 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf11d16 3', mRNA sequence
Length = 337
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| |||||||| |||||| |||||
Sbjct: 222 tgcagacggccatggtcttgttgttggtgccggtgtact 260
>gb|BJ252567.1|BJ252567 BJ252567 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24o17 3', mRNA sequence
Length = 612
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| |||||||| |||||| |||||
Sbjct: 221 tgcagacggccatggtcttgttgttggtgccggtgtact 259
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 685 cacgtccttctcgtccttgta 705
|||||||||||||||||||||
Sbjct: 588 cacgtccttctcgtccttgta 608
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 432 ctggtcgatgacgatggggt 451
>gb|BJ278246.1|BJ278246 BJ278246 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr15g05 5', mRNA sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggttggccac 555
||||||||||||||| |||||||||||
Sbjct: 198 ctggtcgatgacgatagggttggccac 172
>gb|BJ283298.1|BJ283298 BJ283298 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr15g05 3', mRNA sequence
Length = 690
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggttggccac 555
||||||||||||||| |||||||||||
Sbjct: 493 ctggtcgatgacgatagggttggccac 519
>gb|BQ606326.1|BQ606326 BRY_2178 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggttggccac 555
|||||||||| ||||||||||||||||
Sbjct: 369 ctggtcgatgccgatggggttggccac 343
>gb|CA741798.1|CA741798 wia1c.pk003.h2 wia1c Triticum aestivum cDNA clone wia1c.pk003.h2 5'
end, mRNA sequence
Length = 572
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| |||||||| |||||| |||||
Sbjct: 324 tgcagacggccatggtcttgttgttggtgccggtgtact 286
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 32 ctggtcgatgacgatggggt 51
>gb|CD454470.1|CD454470 WHE2319_C03_F05ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2319_C03_F05, mRNA sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 315 tgcagacggccatggttttgttgttcttgccggcgtact 353
|||||||||||||||| |||||||| |||||| |||||
Sbjct: 255 tgcagacggccatggtcttgttgttggtgccggtgtact 293
>gb|CD896286.1|CD896286 G174.102G03F010822 G174 Triticum aestivum cDNA clone G174102G03,
mRNA sequence
Length = 690
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||| ||||||||||||||||||||||
Sbjct: 297 gagatgcagtcgtcgccggtgccgatg 271
>gb|AL811115.1|AL811115 AL811115 d:37 Triticum aestivum cDNA clone A09_d37_plate_1, mRNA
sequence
Length = 240
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 529 ctggtcgatgacgatggggttggccac 555
|||||||||||||||||||| ||||||
Sbjct: 179 ctggtcgatgacgatggggtaggccac 153
>gb|CA622651.1|CA622651 wl1n.pk0098.d7 wl1n Triticum aestivum cDNA clone wl1n.pk0098.d7 5'
end, mRNA sequence
Length = 437
Score = 44.1 bits (22), Expect = 0.028
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 520 gcagaagtactggtcgatgacgatggggtt 549
|||| ||||||||||||||| |||||||||
Sbjct: 30 gcagtagtactggtcgatgatgatggggtt 1
>gb|CA622772.1|CA622772 wl1n.pk0099.d2 wl1n Triticum aestivum cDNA clone wl1n.pk0099.d2 5'
end, mRNA sequence
Length = 436
Score = 44.1 bits (22), Expect = 0.028
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 520 gcagaagtactggtcgatgacgatggggtt 549
|||| ||||||||||||||| |||||||||
Sbjct: 30 gcagtagtactggtcgatgatgatggggtt 1
>gb|BQ167136.1|BQ167136 WHE0056_A08_A16ZK Cheyenne wheat endosperm cDNA library Triticum
aestivum cDNA clone WHE0056_A08_A16, mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgc 812
||||||||||||||||||||||
Sbjct: 32 gagacgcagtcgtcgccggtgc 11
>gb|BE498455.1|BE498455 WHE0967_F01_K01ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0967_F01_K01, mRNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 934 gatgttgatgtggaagaacttggagttga 962
|||||| ||||||||||||||||| ||||
Sbjct: 601 gatgttcatgtggaagaacttggaattga 573
>gb|BJ247735.1|BJ247735 BJ247735 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3i08 5', mRNA sequence
Length = 605
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 934 gatgttgatgtggaagaacttggagttga 962
|||||| ||||||||||||||||| ||||
Sbjct: 602 gatgttcatgtggaagaacttggaattga 574
>gb|BJ249864.1|BJ249864 BJ249864 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14b21 3', mRNA sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 685 cacgtccttctcgtccttgta 705
|||||||||||||||||||||
Sbjct: 595 cacgtccttctcgtccttgta 615
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 529 ctggtcgatgacgatggggt 548
||||||||||||||||||||
Sbjct: 439 ctggtcgatgacgatggggt 458
>gb|BQ902457.1|BQ902457 Ta02_02g09_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_02g09, mRNA
sequence
Length = 276
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 315 tgcagacggccatggttttgttgtt 339
|||||||||||||||| ||||||||
Sbjct: 241 tgcagacggccatggtcttgttgtt 265
>gb|BE498146.1|BE498146 WHE0954_H09_P18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0954_H09_P18, mRNA sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 794 acgcagtcgtcgccggtgccgatg 817
||||||||||||||||||| ||||
Sbjct: 368 acgcagtcgtcgccggtgcggatg 345
>gb|BI479704.1|BI479704 WHE3451_B04_C07ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3451_B04_C07, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.44
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 1143 acttgtccaggtcgtttgatcccagcaggttgccatccagctggatgg 1190
||||| |||||||||| || | ||||||||||| ||||||| |||||
Sbjct: 356 acttggccaggtcgttggaagctagcaggttgccttccagcttgatgg 309
>gb|BJ266660.1|BJ266660 BJ266660 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh27l09 3', mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccg 814
|||| |||||||||||||||||||
Sbjct: 654 gagatgcagtcgtcgccggtgccg 677
>gb|CN008087.1|CN008087 WHE2637_B12_C23ZE Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2637_B12_C23,
mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.44
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 520 gcagaagtactggtcgatgacgatggggttgg 551
|||| ||||||||||||||| |||||| ||||
Sbjct: 526 gcagtagtactggtcgatgatgatgggattgg 495
Score = 40.1 bits (20), Expect = 0.44
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 625 cttgatgcgcacgccgttggtggtgttcttgagcacgcag 664
|||||| || ||||||||||||||||| |||||| ||||
Sbjct: 426 cttgatccggacgccgttggtggtgttggtgagcaagcag 387
>gb|DR734786.1|DR734786 FGAS080540 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 837
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 851 ccgacgtggacgccgtccgtgttc 874
|||||||||| |||||||||||||
Sbjct: 630 ccgacgtggatgccgtccgtgttc 607
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 412,551
Number of Sequences: 636343
Number of extensions: 412551
Number of successful extensions: 128196
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128071
Number of HSP's gapped (non-prelim): 125
length of query: 1531
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1511
effective length of database: 354,513,379
effective search space: 535669715669
effective search space used: 535669715669
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)