BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670899.2.1
(555 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG908265.1|BG908265 TaLr1166H01F TaLr1 Triticum aestivum... 494 e-138
gb|BQ171296.1|BQ171296 WHE2348_A05_B10ZT Wheat pre-anthesis... 440 e-122
gb|BJ258792.1|BJ258792 BJ258792 Y. Ogihara unpublished cDNA... 408 e-112
gb|CK199494.1|CK199494 FGAS007994 Triticum aestivum FGAS: L... 398 e-109
gb|CA641288.1|CA641288 wre1n.pk0043.h2 wre1n Triticum aesti... 375 e-102
gb|CA661376.1|CA661376 wlmk1.pk0005.a8 wlmk1 Triticum aesti... 353 8e-096
gb|CA682807.1|CA682807 wlm96.pk0006.b3 wlm96 Triticum aesti... 295 2e-078
gb|BQ903932.1|BQ903932 Ta03_16g05_R Ta03_AAFC_ECORC_Fusariu... 242 2e-062
gb|CA647932.1|CA647932 wre1n.pk0122.d12 wre1n Triticum aest... 86 3e-015
gb|CA641527.1|CA641527 wre1n.pk0046.f3 wre1n Triticum aesti... 76 3e-012
gb|BQ238253.1|BQ238253 TaE05006E03F TaE05 Triticum aestivum... 72 4e-011
gb|AL810110.1|AL810110 AL810110 d:15 Triticum aestivum cDNA... 56 3e-006
gb|BJ320027.1|BJ320027 BJ320027 Y. Ogihara unpublished cDNA... 46 0.003
gb|BT009236.1| Triticum aestivum clone wle1n.pk0109.e10:fis... 46 0.003
gb|AL819732.1|AL819732 AL819732 n:129 Triticum aestivum cDN... 42 0.040
>gb|BG908265.1|BG908265 TaLr1166H01F TaLr1 Triticum aestivum cDNA clone TaLr1166H01 3',
mRNA sequence
Length = 633
Score = 494 bits (249), Expect = e-138
Identities = 366/405 (90%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||| |||||| |||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 182 ttagctaccgaacatcttgaggccgaacccgacgtcctcgcagtgtcggacgtagggctt 241
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| ||| ||||| || ||| ||||||||| ||||||||| |||||||||||||||||
Sbjct: 242 gacgcgggccacgtccacctccttcttggcccggcacccgagtatcggcggcgagtgcag 301
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 302 gcacggctcgacggacgtggaccggacgcaggcgacgtcggacacctccttgttccagtc 361
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||| ||||| ||||||||||||| ||| ||||| |||||||||||
Sbjct: 362 cggccggagcaggatccagggcttgacgccggcgaagccgtaggcgacatagccgaaggt 421
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 422 ggaccaggcgctcatggcgatcttgtcgcagtagctgagcaggtagatctccgccagcgc 481
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| |||||||||| ||||| ||||| |||||||||||| |||||| ||||
Sbjct: 482 cttctggttgtgctcgttggacgcgtactcctgcttctcctcgtggctcggctggtacac 541
Query: 497 cgccacgatctccccactcttggtggggctctcgtagtacatgcc 541
||||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 542 cgccacgatctcccccgtcttggtcgggttctcgtagtacatgcc 586
>gb|BQ171296.1|BQ171296 WHE2348_A05_B10ZT Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2348_A05_B10, mRNA sequence
Length = 547
Score = 440 bits (222), Expect = e-122
Identities = 329/365 (90%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||| |||||| |||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 183 ttagctaccgaacatcttgaggccgaacccgacgtcctcgcagtgtcggacgtagggctt 242
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| ||| ||||| || ||| ||||||||| ||||||||| |||||||||||||||||
Sbjct: 243 gacgcgggccacgtccacctccttcttggcccggcacccgagtatcggcggcgagtgcag 302
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 303 gcacggctcgacggacgtggaccggacgcaggcgacgtcggacacctccttgttccagtc 362
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||| ||||| ||||||||||||| ||| ||||| |||||||||||
Sbjct: 363 cggccggagcaggatccagggcttgacgccggcgaagccgtaggcgacatagccgaaggt 422
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 423 ggaccaggcgctcatggcgatcttgtcgcagtagctgagcaggtanatctccgccagcgc 482
Query: 437 cttctggttgtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacac 496
|||||||||||| |||||||||| ||||| ||||| |||||||||||| |||||| ||||
Sbjct: 483 cttctggttgtgctcgttggacgcgtactcctgcttctcctcgtggctcggctggtacac 542
Query: 497 cgcca 501
|||||
Sbjct: 543 cgcca 547
>gb|BJ258792.1|BJ258792 BJ258792 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh9j01 5', mRNA sequence
Length = 656
Score = 408 bits (206), Expect = e-112
Identities = 300/330 (90%), Gaps = 1/330 (0%)
Strand = Plus / Minus
Query: 207 acgtcgacgtccgtcttggccctgcacccgagg-atcggcggcgagtgcaggcacggctc 265
||||| || ||| |||| |||| |||||||| | ||||||||||||||||||||||||||
Sbjct: 655 acgtccacctccttctttgcccggcacccgaagtatcggcggcgagtgcaggcacggctc 596
Query: 266 cacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtccggccggat 325
|||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||
Sbjct: 595 gacggacgtggaccggacgcacgcgacgtcggacacctccttgttccagtccgggcggag 536
Query: 326 caggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggtggaccaggc 385
||||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct: 535 caggatccacggcttgacgccggcgaagccgtaggcgacgtacccgaaggtggaccaggc 476
Query: 386 gctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgccttctggtt 445
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 475 gctcatggcgatcttgtcgcagtagctgaggaggtagatctcggccagcgccttctggtt 416
Query: 446 gtggtcgttggacgtgtactgctgctgctcctcgtggctgggctggaacaccgccacgat 505
||| |||||||||| ||||| ||||| |||||||||||| |||||| |||||||||||||
Sbjct: 415 gtgctcgttggacgcgtactcctgcttctcctcgtggctcggctggtacaccgccacgat 356
Query: 506 ctccccactcttggtggggctctcgtagta 535
|||||| ||||||| ||||||||||||||
Sbjct: 355 ctcccccgtcttggtcgggctctcgtagta 326
>gb|CK199494.1|CK199494 FGAS007994 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 855
Score = 398 bits (201), Expect = e-109
Identities = 291/321 (90%)
Strand = Plus / Plus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||| |||||| |||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 310 ttagctaccgaacatcttgaggccgaacccgacgtcctcgcagtgtcggacgtagggctt 369
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| ||| ||||| || ||| ||||||||| ||||||||| |||||||||||||||||
Sbjct: 370 gacgcgggccacgtccacctccttcttggcccggcacccgagtatcggcggcgagtgcag 429
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 430 gcacggctcgacggacgtggaccggacgcaggcgacgtcggacacctccttgttccagtc 489
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
|||||||| ||||||||| ||||| ||||||||||||| ||| ||||| |||||||||||
Sbjct: 490 cggccggagcaggatccagggcttgacgccggcgaagccgtaggcgacatagccgaaggt 549
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcggccagcgc 436
||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 550 ggaccaggcgctcatggcgatcttgtcgcagtagctgagcaggtagatctccgccagcgc 609
Query: 437 cttctggttgtggtcgttgga 457
|||||||||||| ||||||||
Sbjct: 610 cttctggttgtgctcgttgga 630
>gb|CA641288.1|CA641288 wre1n.pk0043.h2 wre1n Triticum aestivum cDNA clone wre1n.pk0043.h2
5' end, mRNA sequence
Length = 388
Score = 375 bits (189), Expect = e-102
Identities = 267/293 (91%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 293 ttagctatcgaacagcttgaggccgaacccgacgtcctcgcagtgccggacgtacggctt 234
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| ||| ||||| || ||| |||| |||| ||||||||| |||||||||||||||||
Sbjct: 233 gacgcgggccacgtccacctccttctttgcccggcacccgagtatcggcggcgagtgcag 174
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 173 gcacggctcgacggacgtggaccggacgcacgcgacgtcggacacctccttgttccagtc 114
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
||| |||| ||||||||||||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct: 113 cgggcggagcaggatccacggcttgacgccggcgaagccgtaggcgacgtacccgaaggt 54
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcgg 429
||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 53 ggaccaggcgctcatggcgatcttgtcgcagtagctgaggaggtagatctcgg 1
>gb|CA661376.1|CA661376 wlmk1.pk0005.a8 wlmk1 Triticum aestivum cDNA clone wlmk1.pk0005.a8
5' end, mRNA sequence
Length = 367
Score = 353 bits (178), Expect = 8e-096
Identities = 253/278 (91%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 278 ttagctatcgaacagcttgaggccgaacccgacgtcctcgcagtgccggacgtacggctt 219
Query: 197 gacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcgagtgcag 256
||| ||| ||||| || ||| |||| |||| ||||||||| |||||||||||||||||
Sbjct: 218 gacgcgggccacgtccacctccttctttgcccggcacccgagtatcggcggcgagtgcag 159
Query: 257 gcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgttccagtc 316
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 158 gcacggctcgacggacgtggaccggacgcacgcgacgtcggacacctccttgttccagtc 99
Query: 317 cggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggt 376
||| |||| ||||||||||||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct: 98 cgggcggagcaggatccacggcttgacgccggcgaagccgtaggcgacgtacccgaaggt 39
Query: 377 ggaccaggcgctcatcgtgatcttgtcgcagtagctga 414
||||||||||||||| | ||||||||||||||||||||
Sbjct: 38 ggaccaggcgctcatggcgatcttgtcgcagtagctga 1
>gb|CA682807.1|CA682807 wlm96.pk0006.b3 wlm96 Triticum aestivum cDNA clone wlm96.pk0006.b3
5' end, mRNA sequence
Length = 434
Score = 295 bits (149), Expect = 2e-078
Identities = 223/250 (89%)
Strand = Plus / Minus
Query: 242 cggcggcgagtgcaggcacggctccacggacgtggaccggacgcacgcgacgtcggaggt 301
||||||||||||||| |||||||| || ||| | |||||||||||||||||||||||
Sbjct: 250 cggcggcgagtgcagncacggctcgacngacttngaccggacgcacgcgacgtcggacac 191
Query: 302 ctccctgttccagtccggccggatcaggatccacggcttcacgccggcgaagctgtacgc 361
|||| ||||||||||||| |||| ||| | |||||| || ||||||||||||| ||| ||
Sbjct: 190 ctccttgttccagtccgggcggagcagnanccacggnttgacgccggcgaagccgtaggc 131
Query: 362 gacgtagccgaaggtggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggta 421
||| || ||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 130 gacntacccgaaggtggaccaggcgctcatggcgatcttgtcgcagtagctgaggaggta 71
Query: 422 gatctcggccagcgccttctggttgtggtcgttggacgtgtactgctgctgctcctcgtg 481
||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||
Sbjct: 70 gatctcggccagcgccttctggttgtgctcgttggacgcgtactcctgcttctcctcgtg 11
Query: 482 gctgggctgg 491
||| ||||||
Sbjct: 10 gctcggctgg 1
>gb|BQ903932.1|BQ903932 Ta03_16g05_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_16g05, mRNA
sequence
Length = 302
Score = 242 bits (122), Expect = 2e-062
Identities = 232/268 (86%), Gaps = 2/268 (0%)
Strand = Plus / Plus
Query: 190 acggcttgacagcggcgacgtcgacgtccgtcttggccctgcacccgaggatcggcggcg 249
||||||||||| ||| |||||||| ||| | | |||| |||||||||||| |||||||
Sbjct: 1 acggcttgacacgggccacgtcgacctcctccctcgcccggcacccgaggatgggcggcg 60
Query: 250 agtgcaggcacggctccacggacgtggaccggacgcacgcgacgtcggaggtctccctgt 309
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct: 61 agtgcaggcacggctccacggacgtggaccggacgcacacgacgtcggacatctccttgt 120
Query: 310 tccagtccggccggatcaggatccacggcttcacgccggcgaagctgtacgcgacgtagc 369
|||||||||||||| ||||||||||||||| |||||||||||| | || || || |
Sbjct: 121 cccagtccggccggagcaggatccacggctttacgccggcgaag-bkaaggcaacatacc 179
Query: 370 cgaaggtggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggtagatctcgg 429
| | |||||||||| |||| | ||| ||||||||||||||||||||||||||||| |
Sbjct: 180 cs-acgtggaccaggtgctcgtgacgattttgtcgcagtagctgagcaggtagatctccg 238
Query: 430 ccagcgccttctggttgtggtcgttgga 457
||||||||||||||||||| ||||||||
Sbjct: 239 ccagcgccttctggttgtgctcgttgga 266
>gb|CA647932.1|CA647932 wre1n.pk0122.d12 wre1n Triticum aestivum cDNA clone
wre1n.pk0122.d12 5' end, mRNA sequence
Length = 262
Score = 85.7 bits (43), Expect = 3e-015
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgtacggctt 196
||||||| |||||| |||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 69 ttagctaccgaacatcttgaggccgaacccgacgtcctcgcagtgtcggacgtagggctt 10
Query: 197 gac 199
|||
Sbjct: 9 gac 7
>gb|CA641527.1|CA641527 wre1n.pk0046.f3 wre1n Triticum aestivum cDNA clone wre1n.pk0046.f3
5' end, mRNA sequence
Length = 255
Score = 75.8 bits (38), Expect = 3e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 137 ttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtgccggacgta 190
||||||| |||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct: 58 ttagctaccgaacatcttgaggccgaacccgacgtcctcgcagtgtcggacgta 5
>gb|BQ238253.1|BQ238253 TaE05006E03F TaE05 Triticum aestivum cDNA clone TaE05006E03F, mRNA
sequence
Length = 500
Score = 71.9 bits (36), Expect = 4e-011
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 423 agctgagcaggtagatctccgccagcgccttctggttgtg 462
>gb|AL810110.1|AL810110 AL810110 d:15 Triticum aestivum cDNA clone C06_d15_plate_6, mRNA
sequence
Length = 390
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
|||| |||||||||||||| || |||||||||||||||||
Sbjct: 178 agctcagcaggtagatctccgcgagcgccttctggttgtg 139
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 467 ctgctgctcctcgtggctgggctggaacaccgccac 502
|||| ||||||||||||| |||||||||||| ||||
Sbjct: 120 ctgccgctcctcgtggctcggctggaacacccccac 85
>gb|BJ320027.1|BJ320027 BJ320027 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf13c22 3', mRNA sequence
Length = 699
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 414 agcaggtagatctcggccagcgccttc 440
|||||||||||||| ||||||||||||
Sbjct: 457 agcaggtagatctccgccagcgccttc 483
>gb|BT009236.1| Triticum aestivum clone wle1n.pk0109.e10:fis, full insert mRNA
sequence
Length = 1262
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 152 cttgaggccgaagccgacgtcctcgcagtgccggacgtacggc 194
||||||||| ||| ||||||||||||||||| |||||||||
Sbjct: 984 cttgaggccccagctgacgtcctcgcagtgcctcacgtacggc 942
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 329 gatccacggcttcacgccggcgaagctgtacgcgacgtagccgaaggtgga 379
|||||||||| | | |||||||| || | |||||||||||||||||||||
Sbjct: 810 gatccacggcgtgaggccggcgaggccctgcgcgacgtagccgaaggtgga 760
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 414 agcaggtagatctcggccagcgccttc 440
|||||||||||||| ||||||||||||
Sbjct: 725 agcaggtagatctccgccagcgccttc 699
>gb|AL819732.1|AL819732 AL819732 n:129 Triticum aestivum cDNA clone B11_n129_plate_4, mRNA
sequence
Length = 410
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 359 cgcgacgtagccgaaggtgga 379
|||||||||||||||||||||
Sbjct: 296 cgcgacgtagccgaaggtgga 276
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,137
Number of Sequences: 636343
Number of extensions: 145137
Number of successful extensions: 35688
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35659
Number of HSP's gapped (non-prelim): 29
length of query: 555
length of database: 367,240,239
effective HSP length: 19
effective length of query: 536
effective length of database: 355,149,722
effective search space: 190360250992
effective search space used: 190360250992
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)