BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3642920.2.1
(570 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF202632.1|BF202632 WHE1783_C11_E21ZS Wheat pre-anthesis... 396 e-109
gb|BE399088.1|BE399088 WHE0030.D11F990514 ITEC WHE Wheat En... 341 3e-092
gb|BF478571.1|BF478571 WHE2003_B08_D15ZS Chinese Spring whe... 105 3e-021
gb|CV769322.1|CV769322 FGAS063713 Triticum aestivum FGAS: L... 105 3e-021
gb|CA607918.1|CA607918 wr1.pk0083.h9 wr1 Triticum aestivum ... 82 5e-014
gb|BJ266251.1|BJ266251 BJ266251 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ266252.1|BJ266252 BJ266252 Y. Ogihara unpublished cDNA... 46 0.003
gb|BJ266257.1|BJ266257 BJ266257 Y. Ogihara unpublished cDNA... 46 0.003
gb|BE414014.1|BE414014 SCU005.D05.R990714 ITEC SCU Wheat En... 42 0.041
gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA... 42 0.041
gb|BQ606618.1|BQ606618 BRY_2483 wheat EST endosperm library... 42 0.041
gb|BQ806893.1|BQ806893 WHE3584_D03_G06ZS Wheat developing g... 42 0.041
gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: L... 42 0.041
gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: L... 42 0.041
gb|BE446339.1|BE446339 WHE1455_E04_I07ZS Wheat etiolated se... 40 0.16
gb|BE446344.1|BE446344 WHE1455_D11_G21ZS Wheat etiolated se... 40 0.16
gb|BE488685.1|BE488685 WHE1053_F05_L09ZS Wheat unstressed s... 40 0.16
gb|BE488842.1|BE488842 WHE1078_E09_J18ZS Wheat unstressed s... 40 0.16
gb|BE489330.1|BE489330 WHE1076_B10_C20ZS Wheat unstressed s... 40 0.16
gb|BE489408.1|BE489408 WHE1071-1074_G03_G03ZS Wheat unstres... 40 0.16
gb|BE489749.1|BE489749 WHE1071-1074_H18_H18ZS Wheat unstres... 40 0.16
gb|BF202224.1|BF202224 WHE0984_B04_C08ZS Wheat pre-anthesis... 40 0.16
gb|BJ224599.1|BJ224599 BJ224599 Y. Ogihara unpublished cDNA... 40 0.16
gb|CA654052.1|CA654052 wre1n.pk162.e10 wre1n Triticum aesti... 40 0.16
gb|CA664365.1|CA664365 wlk1.pk0003.h4 wlk1 Triticum aestivu... 40 0.16
gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aes... 40 0.16
gb|CK202296.1|CK202296 FGAS010819 Triticum aestivum FGAS: L... 40 0.16
gb|CK202554.1|CK202554 FGAS011079 Triticum aestivum FGAS: L... 40 0.16
>gb|BF202632.1|BF202632 WHE1783_C11_E21ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1783_C11_E21, mRNA sequence
Length = 559
Score = 396 bits (200), Expect = e-109
Identities = 410/480 (85%)
Strand = Plus / Plus
Query: 9 tttgtgttagcatcagataacatccttgcagcctcagttgtggtcagatcaacaattaga 68
||||| ||||| ||||| |||||||||||||| || |||||||||||||||||| |||||
Sbjct: 80 tttgttttagcgtcagacaacatccttgcagcttcggttgtggtcagatcaacagttaga 139
Query: 69 tcatcactgaagcctgagaggattgttttccatgttattactgataaaaagacctatcct 128
||| || |||||||||||||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 140 tcagcattgaagcctgagaggatagtctttcatgtcattactgacaagaagacctatcct 199
Query: 129 gccatgcattcatggtttgctttaaattctctcagtcctgctattgttgaggtgaaaggt 188
|||||||||||||||||||| || ||| |||| |||||| ||| |||||||||| |||
Sbjct: 200 gccatgcattcatggtttgcattgaatcctctttatcctgccattattgaggtgaagggt 259
Query: 189 gttcatcaatttgattggttaacacaagaaaatgttcctgtacttgaatcaatagaaact 248
|| || |||||||| ||||| || ||||||||| ||| || ||||| | ||||||| |
Sbjct: 260 gtccaccaatttgaatggttgacgaaagaaaatggtccagttcttgaggctatagaaatt 319
Query: 249 cagcgcgctgccagagatcgttaccatggaagtcgccgcccaataaccagtgctaatgat 308
|||| | ||||||| |||||||||||||| || || ||| ||||| ||| |||
Sbjct: 320 cagcacattgccagaagtcgttaccatggaaatcaccttgcaagaaccactgcaggtgac 379
Query: 309 agcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgtgctc 368
||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 380 agcccgagagtttttgcagccaagctgcaggcaggaagtccaacatatacatctgtgctc 439
Query: 369 aatcatattcgaatatacatgcctgagttgttcccaagcctcaacaaagtcgtatttctt 428
||||||||||| |||||| |||||||||| ||||||||||||| ||| || |||||||||
Sbjct: 440 aatcatattcgtatatacttgcctgagttattcccaagcctcagcaaggttgtatttctt 499
Query: 429 gatgatgatgttgttgtccagcatgacctatcaccactttgggatattgatctatctggg 488
|||||||||||||||||||| | |||||| ||| |||||||||||||||||||| |||||
Sbjct: 500 gatgatgatgttgttgtccaacgtgacctgtcatcactttgggatattgatctagctggg 559
>gb|BE399088.1|BE399088 WHE0030.D11F990514 ITEC WHE Wheat Endosperm Library Triticum
aestivum cDNA clone WHE0030.D11, mRNA sequence
Length = 443
Score = 341 bits (172), Expect = 3e-092
Identities = 238/260 (91%)
Strand = Plus / Plus
Query: 309 agcccaagggtttttgctgccaagcttcaggcaggaagtccaacatatactaatgtgctc 368
||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 32 agcccgagagtttttgcagccaagctgcaggcaggaagtccaacatatacatctgtgctc 91
Query: 369 aatcatattcgaatatacatgcctgagttgttcccaagcctcaacaaagtcgtatttctt 428
||||||||||| |||||| |||||||||| ||||||||||||| ||| || |||||||||
Sbjct: 92 aatcatattcgtatatacttgcctgagttattcccaagcctcagcaaggttgtatttctt 151
Query: 429 gatgatgatgttgttgtccagcatgacctatcaccactttgggatattgatctatctggg 488
|||||||||||||||||||| | |||||| ||| |||||||||||||||||||| |||||
Sbjct: 152 gatgatgatgttgttgtccaacgtgacctgtcatcactttgggatattgatctagctggg 211
Query: 489 aaggttaatggcgctgttgagacttgcagaggtggagatagttgggtgatgtctaagagg 548
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 212 aaggtaaatggagctgttgagacttgcaggggtggagatagttgggtgatgtctaagagg 271
Query: 549 ttcaggaattatttaaactt 568
|||||||||||||| |||||
Sbjct: 272 ttcaggaattattttaactt 291
>gb|BF478571.1|BF478571 WHE2003_B08_D15ZS Chinese Spring wheat drought stressed leaf cDNA
library Triticum aestivum cDNA clone WHE2003_B08_D15,
mRNA sequence
Length = 460
Score = 105 bits (53), Expect = 3e-021
Identities = 149/181 (82%)
Strand = Plus / Plus
Query: 388 tgcctgagttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtcc 447
|||||||| | || |||||||||||||| || || || ||||||||||| ||||||| |
Sbjct: 249 tgcctgagctctttccaagcctcaacaaggtggtcttccttgatgatgacattgttgttc 308
Query: 448 agcatgacctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttg 507
||| ||| |||| || |||||||| |||||||| || ||||| ||||| ||||| |
Sbjct: 309 agcgtgatttatctcctctttgggagattgatcttgaaggaaaggtgaatggtgctgtgg 368
Query: 508 agacttgcagaggtggagatagttgggtgatgtctaagaggttcaggaattatttaaact 567
|||| |||||||||| ||||| |||||||||||||||| | ||||||| ||||| ||||
Sbjct: 369 agacatgcagaggtgaagataattgggtgatgtctaagcgcttcaggacatatttcaact 428
Query: 568 t 568
|
Sbjct: 429 t 429
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 165 cctgctattgttgaggtgaaaggtgttcatcaatttgattggtt 208
||||| || ||||| ||||||||||||||||| ||||| |||||
Sbjct: 26 cctgcaatagttgaagtgaaaggtgttcatcagtttgactggtt 69
>gb|CV769322.1|CV769322 FGAS063713 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 883
Score = 105 bits (53), Expect = 3e-021
Identities = 149/181 (82%)
Strand = Plus / Plus
Query: 388 tgcctgagttgttcccaagcctcaacaaagtcgtatttcttgatgatgatgttgttgtcc 447
|||||||| | || |||||||||||||| || || || ||||||||||| ||||||| |
Sbjct: 233 tgcctgagctctttccaagcctcaacaaggtggtcttccttgatgatgacattgttgttc 292
Query: 448 agcatgacctatcaccactttgggatattgatctatctgggaaggttaatggcgctgttg 507
||| ||| |||| || |||||||| |||||||| || ||||| ||||| ||||| |
Sbjct: 293 agcgtgatttatctcctctttgggagattgatcttgaaggaaaggtgaatggtgctgtgg 352
Query: 508 agacttgcagaggtggagatagttgggtgatgtctaagaggttcaggaattatttaaact 567
|||| |||||||||| ||||| |||||||||||||||| | ||||||| ||||| ||||
Sbjct: 353 agacatgcagaggtgaagataattgggtgatgtctaagcgcttcaggacatatttcaact 412
Query: 568 t 568
|
Sbjct: 413 t 413
>gb|CA607918.1|CA607918 wr1.pk0083.h9 wr1 Triticum aestivum cDNA clone wr1.pk0083.h9 5'
end, mRNA sequence
Length = 621
Score = 81.8 bits (41), Expect = 5e-014
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 524 agatagttgggtgatgtctaagaggttcaggaattatttaaactt 568
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 agatagttgggtgatgtctaagaggttcaggaattattttaactt 45
>gb|BJ266251.1|BJ266251 BJ266251 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k11 3', mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 423 tttcttgatgatgatgttgttgt 445
|||||||||||||||||||||||
Sbjct: 397 tttcttgatgatgatgttgttgt 375
>gb|BJ266252.1|BJ266252 BJ266252 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k12 3', mRNA sequence
Length = 642
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 423 tttcttgatgatgatgttgttgt 445
|||||||||||||||||||||||
Sbjct: 471 tttcttgatgatgatgttgttgt 449
>gb|BJ266257.1|BJ266257 BJ266257 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k23 3', mRNA sequence
Length = 382
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 423 tttcttgatgatgatgttgttgt 445
|||||||||||||||||||||||
Sbjct: 246 tttcttgatgatgatgttgttgt 224
>gb|BE414014.1|BE414014 SCU005.D05.R990714 ITEC SCU Wheat Endosperm Library Triticum
aestivum cDNA clone SCU005.D05, mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttg 514
|||||||||||||| ||||| ||||||||
Sbjct: 418 gggaaggttaatggtgctgtagagacttg 446
>gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6k21 3', mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 486 gggaaggttaatggcgctgttgagacttg 514
|||||||||||||| ||||| ||||||||
Sbjct: 614 gggaaggttaatggtgctgtagagacttg 586
>gb|BQ606618.1|BQ606618 BRY_2483 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttg 514
|||||||||||||| ||||| ||||||||
Sbjct: 295 gggaaggttaatggtgctgtagagacttg 323
>gb|BQ806893.1|BQ806893 WHE3584_D03_G06ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3584_D03_G06, mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttg 514
|||||||||||||| ||||| ||||||||
Sbjct: 454 gggaaggttaatggtgctgtagagacttg 482
>gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttg 514
|||||||||||||| ||||| ||||||||
Sbjct: 256 gggaaggttaatggtgctgtagagacttg 284
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttg 514
|||||||||||||| ||||| ||||||||
Sbjct: 116 gggaaggttaatggtgctgtagagacttg 144
>gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 868
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 486 gggaaggttaatggcgctgttgagacttg 514
|||||||||||||| ||||| ||||||||
Sbjct: 184 gggaaggttaatggtgctgtagagacttg 212
>gb|BE446339.1|BE446339 WHE1455_E04_I07ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1455_E04_I07,
mRNA sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgt 445
||||||||||||||||||||
Sbjct: 379 cttgatgatgatgttgttgt 398
>gb|BE446344.1|BE446344 WHE1455_D11_G21ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1455_D11_G21,
mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 310 tttcttgatgatgatgttgt 329
>gb|BE488685.1|BE488685 WHE1053_F05_L09ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1053_F05_L09,
mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 387 tttcttgatgatgatgttgt 406
>gb|BE488842.1|BE488842 WHE1078_E09_J18ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1078_E09_J18,
mRNA sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 387 tttcttgatgatgatgttgt 406
>gb|BE489330.1|BE489330 WHE1076_B10_C20ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1076_B10_C20,
mRNA sequence
Length = 598
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 387 tttcttgatgatgatgttgt 406
>gb|BE489408.1|BE489408 WHE1071-1074_G03_G03ZS Wheat unstressed seedling shoot normalized
cDNA library Triticum aestivum cDNA clone
WHE1071-1074_G03_G03, mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 388 tttcttgatgatgatgttgt 407
>gb|BE489749.1|BE489749 WHE1071-1074_H18_H18ZS Wheat unstressed seedling shoot normalized
cDNA library Triticum aestivum cDNA clone
WHE1071-1074_H18_H18, mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 388 tttcttgatgatgatgttgt 407
>gb|BF202224.1|BF202224 WHE0984_B04_C08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0984_B04_C08, mRNA sequence
Length = 267
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgt 445
||||||||||||||||||||
Sbjct: 244 cttgatgatgatgttgttgt 263
>gb|BJ224599.1|BJ224599 BJ224599 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl19h04 5', mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgt 445
||||||||||||||||||||
Sbjct: 26 cttgatgatgatgttgttgt 45
>gb|CA654052.1|CA654052 wre1n.pk162.e10 wre1n Triticum aestivum cDNA clone wre1n.pk162.e10
5' end, mRNA sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgt 445
||||||||||||||||||||
Sbjct: 366 cttgatgatgatgttgttgt 385
>gb|CA664365.1|CA664365 wlk1.pk0003.h4 wlk1 Triticum aestivum cDNA clone wlk1.pk0003.h4 5'
end, mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 75 tttcttgatgatgatgttgt 94
>gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aestivum cDNA clone AZO4106G09,
mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgt 442
||||||||||||||||||||
Sbjct: 190 tttcttgatgatgatgttgt 209
>gb|CK202296.1|CK202296 FGAS010819 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 762
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgt 445
||||||||||||||||||||
Sbjct: 188 cttgatgatgatgttgttgt 207
>gb|CK202554.1|CK202554 FGAS011079 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgt 445
||||||||||||||||||||
Sbjct: 187 cttgatgatgatgttgttgt 206
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 109,050
Number of Sequences: 636343
Number of extensions: 109050
Number of successful extensions: 28425
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28385
Number of HSP's gapped (non-prelim): 37
length of query: 570
length of database: 367,240,239
effective HSP length: 19
effective length of query: 551
effective length of database: 355,149,722
effective search space: 195687496822
effective search space used: 195687496822
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)