BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ291955.1|BJ291955 BJ291955 Y. Ogihara unpublished cDNA... 476 e-133
gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aes... 460 e-128
gb|BE446344.1|BE446344 WHE1455_D11_G21ZS Wheat etiolated se... 224 5e-057
gb|BQ161554.1|BQ161554 WHE1455_D11_G21ZT Wheat etiolated se... 220 8e-056
gb|BE488685.1|BE488685 WHE1053_F05_L09ZS Wheat unstressed s... 184 5e-045
gb|BJ298566.1|BJ298566 BJ298566 Y. Ogihara unpublished cDNA... 176 1e-042
gb|BE489330.1|BE489330 WHE1076_B10_C20ZS Wheat unstressed s... 168 3e-040
gb|BE489749.1|BE489749 WHE1071-1074_H18_H18ZS Wheat unstres... 168 3e-040
gb|BE489408.1|BE489408 WHE1071-1074_G03_G03ZS Wheat unstres... 165 4e-039
gb|BE488842.1|BE488842 WHE1078_E09_J18ZS Wheat unstressed s... 163 2e-038
gb|CD879802.1|CD879802 AZO4.106G09R011122 AZO4 Triticum aes... 153 2e-035
gb|CA664365.1|CA664365 wlk1.pk0003.h4 wlk1 Triticum aestivu... 143 2e-032
gb|BE517578.1|BE517578 WHE0628_E04_J08ZA Wheat ABA-treated ... 139 2e-031
gb|BJ266251.1|BJ266251 BJ266251 Y. Ogihara unpublished cDNA... 62 5e-008
gb|BJ266252.1|BJ266252 BJ266252 Y. Ogihara unpublished cDNA... 62 5e-008
gb|BJ266257.1|BJ266257 BJ266257 Y. Ogihara unpublished cDNA... 62 5e-008
gb|CA596731.1|CA596731 wpa1c.pk014.k18 wpa1c Triticum aesti... 62 5e-008
gb|BJ272424.1|BJ272424 BJ272424 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BE424499.1|BE424499 WHE0084_C10_E20ZS Wheat endosperm cD... 54 1e-005
gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anth... 40 0.17
gb|CA619138.1|CA619138 wl1n.pk0041.b1 wl1n Triticum aestivu... 40 0.17
>gb|BJ291955.1|BJ291955 BJ291955 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl25k04 5', mRNA sequence
Length = 681
Score = 476 bits (240), Expect = e-133
Identities = 408/464 (87%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
|||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 55 ggcaatgttataggagcagtggagacttgtttagagtcatttcatcggtatcacaaatat 114
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|| ||||| ||||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 115 cttaatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggct 174
Query: 127 tttggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtat 186
|||||||||||||| |||||| | || ||||||||||| ||||| || ||||| | |||
Sbjct: 175 tttggaatgaacatatttgacctaattgcttggaggaaagcaaatgcaacatcgctctat 234
Query: 187 cattattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgca 246
||||||||||| ||||||||| |||| | | |||| |||||||| || || ||||| |||
Sbjct: 235 cattattggcaggagcaaaatgctgatcaactgctttggagaacgggcacacttccagca 294
Query: 247 ggccttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggt 306
||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct: 295 ggccttttgacattttatggcctaatggagcccctagaccgaagatggcacgtattgggt 354
Query: 307 ctcgggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactat 366
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct: 355 cttgggtatgatgtagacatagatgaccgcttgattgagagtgctgctgttgtgcattat 414
Query: 367 aatggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaa 426
||||| ||||||||||||||||||||| |||| |||| ||| ||||||| |||||||||
Sbjct: 415 aatgggaacatgaaaccctggctgaagttggccattcaccggtacaagtctatatgggag 474
Query: 427 cggtatgtgaatatctcacacccgtatgttagagagtgtatgtt 470
||| |||| ||| |||| ||||| ||||||| |||||||||||
Sbjct: 475 cggcatgtcaatttctcgcacccacatgttagtgagtgtatgtt 518
>gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aestivum cDNA clone AZO4106G09,
mRNA sequence
Length = 757
Score = 460 bits (232), Expect = e-128
Identities = 406/464 (87%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
|||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 253 ggcaatgttataggagcagtggagacttgtttagagtcatttcatcggtatcacaaatat 312
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|| ||||| ||||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 313 cttaatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggct 372
Query: 127 tttggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtat 186
|||||||||||||| |||||| | || ||||||||||| ||||| || ||||| | |||
Sbjct: 373 tttggaatgaacatatttgacctaattgcttggaggaaagcaaatgcaacatcgctctat 432
Query: 187 cattattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgca 246
||||||||||| ||||||||| |||| | | |||| |||||||| || || ||||| |||
Sbjct: 433 cattattggcaggagcaaaatgctgatcaactgctttggagaacgggcacacttccagca 492
Query: 247 ggccttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggt 306
||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct: 493 ggccttttgacattttatggcctaatggagcccctagaccgaagatggcacgtattgggt 552
Query: 307 ctcgggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactat 366
|| |||||||||||| |||||||||| || ||||||||||||||||||||||||| |||
Sbjct: 553 cttgggtatgatgtaaacatagatgaccgcttgattgagagtgctgctgttgtgcattat 612
Query: 367 aatggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaa 426
||||| ||||||||||||||||||||| |||| |||| ||| ||||||| |||||||||
Sbjct: 613 aatgggaacatgaaaccctggctgaagttggccattcaccggtacaagtctatatgggag 672
Query: 427 cggtatgtgaatatctcacacccgtatgttagagagtgtatgtt 470
||| |||| ||| |||| ||||| ||||||| |||||| ||||
Sbjct: 673 cggcatgtcaatttctcgcacccacatgttagtgagtgtttgtt 716
>gb|BE446344.1|BE446344 WHE1455_D11_G21ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1455_D11_G21,
mRNA sequence
Length = 599
Score = 224 bits (113), Expect = 5e-057
Identities = 194/221 (87%)
Strand = Plus / Plus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 376 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaaatatctt 435
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| ||||| || | |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 436 aatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggctttt 495
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatcat 189
||||||||||| |||||| | || ||||||||||| ||||| || ||||| | ||||||
Sbjct: 496 ggaatgaacatatttgacctaattgcttggaggaaagcaaatgcaacatcgctttatcat 555
Query: 190 tattggcaagagcaaaattctgacctattgctctggagaac 230
|||||||| ||||||||| |||| | |||||| ||||||||
Sbjct: 556 tattggcaggagcaaaatgctgatcaattgctttggagaac 596
>gb|BQ161554.1|BQ161554 WHE1455_D11_G21ZT Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1455_D11_G21,
mRNA sequence
Length = 592
Score = 220 bits (111), Expect = 8e-056
Identities = 174/195 (89%)
Strand = Plus / Minus
Query: 276 gcccctagaccgcagatggcatgtcttgggtctcgggtatgatgtagacatagatgatcg 335
|||||||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 592 gcccctagaccggagatggcacgtattgggtcttgggtatgatgtagacatagatgaccg 533
Query: 336 tctgattgagagtgctgctgttgtgcactataatggaaacatgaaaccctggctgaagct 395
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct: 532 cttgattgagagtgctgctgttgtgcattataatgggaacatgaaaccctggctgaagtt 473
Query: 396 ggctattcgccgttacaagtatatatgggaacggtatgtgaatatctcacacccgtatgt 455
||| |||| ||| ||||||| ||||||||| ||| |||| ||| |||| ||||| ||||
Sbjct: 472 ggccattcaccggtacaagtctatatgggagcggcatgtcaatttctcgcacccacatgt 413
Query: 456 tagagagtgtatgtt 470
|||||||||||||||
Sbjct: 412 tagagagtgtatgtt 398
>gb|BE488685.1|BE488685 WHE1053_F05_L09ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1053_F05_L09,
mRNA sequence
Length = 624
Score = 184 bits (93), Expect = 5e-045
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
|||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 450 ggcaatgttataggagcagtggagacttgtttagagtcatttcatcggtatcacaaatat 509
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|| ||||| ||||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 510 cttaatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggct 569
Query: 127 tttggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatc 179
|||||||||||||| |||||| | || ||||||||||| ||||| || |||||
Sbjct: 570 tttggaatgaacatatttgacctaattgcttggaggaaagcaaatgcaacatc 622
>gb|BJ298566.1|BJ298566 BJ298566 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl25k04 3', mRNA sequence
Length = 671
Score = 176 bits (89), Expect = 1e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 669 gggtatgatgtagacatagatgaccgcttgattgagagtgctgctgttgtgcattataat 610
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| ||||||||||||||||||||| |||| |||| ||| ||||||| ||||||||| |||
Sbjct: 609 gggaacatgaaaccctggctgaagttggccattcaccggtacaagtctatatgggagcgg 550
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgtt 470
|||| ||| |||| ||||| ||||||| |||||||||||
Sbjct: 549 catgtcaatttctcgcacccacatgttagtgagtgtatgtt 509
>gb|BE489330.1|BE489330 WHE1076_B10_C20ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1076_B10_C20,
mRNA sequence
Length = 598
Score = 168 bits (85), Expect = 3e-040
Identities = 127/141 (90%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
|||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 450 ggcaatgttataggagcagtggagacttgtttagagtcatttcatcggtatcacaaatat 509
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|| ||||| ||||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 510 cttaatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggct 569
Query: 127 tttggaatgaacatttttgac 147
|||||||||||||| ||||||
Sbjct: 570 tttggaatgaacatatttgac 590
>gb|BE489749.1|BE489749 WHE1071-1074_H18_H18ZS Wheat unstressed seedling shoot normalized
cDNA library Triticum aestivum cDNA clone
WHE1071-1074_H18_H18, mRNA sequence
Length = 599
Score = 168 bits (85), Expect = 3e-040
Identities = 127/141 (90%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
|||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 451 ggcaatgttataggagcagtggagacttgtttagagtcatttcatcggtatcacaaatat 510
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|| ||||| ||||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 511 cttaatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggct 570
Query: 127 tttggaatgaacatttttgac 147
|||||||||||||| ||||||
Sbjct: 571 tttggaatgaacatatttgac 591
>gb|BE489408.1|BE489408 WHE1071-1074_G03_G03ZS Wheat unstressed seedling shoot normalized
cDNA library Triticum aestivum cDNA clone
WHE1071-1074_G03_G03, mRNA sequence
Length = 589
Score = 165 bits (83), Expect = 4e-039
Identities = 125/139 (89%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
|||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 451 ggcaatgttataggagcagtggagacttgtttagagtcatttcatcggtatcacaaatat 510
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|| ||||| ||||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 511 cttaatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggct 570
Query: 127 tttggaatgaacatttttg 145
|||||||||||||| ||||
Sbjct: 571 tttggaatgaacatatttg 589
>gb|BE488842.1|BE488842 WHE1078_E09_J18ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1078_E09_J18,
mRNA sequence
Length = 584
Score = 163 bits (82), Expect = 2e-038
Identities = 121/134 (90%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
|||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 450 ggcaatgttataggagcagtggagacttgtttagagtcatttcatcggtatcacaaatat 509
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|| ||||| ||||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 510 cttaatttctcgcaaccaataatcagctcaaagattgatccacatacttgtgggtgggct 569
Query: 127 tttggaatgaacat 140
||||||||||||||
Sbjct: 570 tttggaatgaacat 583
>gb|CD879802.1|CD879802 AZO4.106G09R011122 AZO4 Triticum aestivum cDNA clone AZO4106G09,
mRNA sequence
Length = 709
Score = 153 bits (77), Expect = 2e-035
Identities = 142/161 (88%), Gaps = 2/161 (1%)
Strand = Plus / Minus
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||
Sbjct: 690 gggtatgatgtagacatagatgaccgcttgattgagagtgctgctgt-gtgcattataat 632
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|||| ||||||||||||||||||| |||| |||| ||| ||||||| ||||||||| |||
Sbjct: 631 ggaa-catgaaaccctggctgaagttggccattcaccggtacaagtctatatgggagcgg 573
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgtt 470
|||| ||| |||| ||||| ||||||| |||||||||||
Sbjct: 572 catgtcaatttctcgcacccacatgttagtgagtgtatgtt 532
>gb|CA664365.1|CA664365 wlk1.pk0003.h4 wlk1 Triticum aestivum cDNA clone wlk1.pk0003.h4 5'
end, mRNA sequence
Length = 542
Score = 143 bits (72), Expect = 2e-032
Identities = 162/188 (86%), Gaps = 3/188 (1%)
Strand = Plus / Plus
Query: 10 aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 141 aatgttattggagcagtggagacttgtttagagtcatttcatcggtatcacaaatatctt 200
Query: 70 aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
||||| ||||| || | |||||||| |||| |||||||||||| ||||| |||||||||
Sbjct: 201 aatttctcgcaaccaataatcagctcaaaga-tgatccacatacatgtgggtgggctttt 259
Query: 130 -ggaatgaacatttttgacttgatagctt-ggaggaaggcaaacgccacatcattgtatc 187
||||||||||| |||||| | || |||| ||||||| ||||| || ||||| | ||||
Sbjct: 260 gggaatgaacatatttgacctaattgcttgggaggaaagcaaatgcaacatcgctttatc 319
Query: 188 attattgg 195
||||||||
Sbjct: 320 attattgg 327
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 310 gggtatgatgtagacatagatga 332
|||||||||||||||||||||||
Sbjct: 428 gggtatgatgtagacatagatga 450
>gb|BE517578.1|BE517578 WHE0628_E04_J08ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE0628_E04_J08, mRNA sequence
Length = 642
Score = 139 bits (70), Expect = 2e-031
Identities = 118/134 (88%)
Strand = Plus / Minus
Query: 88 atcagctccaagattgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 637 atcagctcaaagattgatccacatacttgtgggtgggcttttggaatgaacatatttgac 578
Query: 148 ttgatagcttggaggaaggcaaacgccacatcattgtatcattattggcaagagcaaaat 207
| || ||||||||||| ||||| || ||||| | |||||||||||||| |||||||||
Sbjct: 577 ctaattgcttggaggaaagcaaatgcaacatcgctttatcattattggcaggagcaaaat 518
Query: 208 tctgacctattgct 221
|||| | ||||||
Sbjct: 517 gctgatcaattgct 504
>gb|BJ266251.1|BJ266251 BJ266251 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k11 3', mRNA sequence
Length = 620
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||| | ||||||| |||||||||||||||||||| ||||||
Sbjct: 240 ttgatccacgtgcttgtggttgggcttttggaatgaacatgtttgac 194
>gb|BJ266252.1|BJ266252 BJ266252 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k12 3', mRNA sequence
Length = 642
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||| | ||||||| |||||||||||||||||||| ||||||
Sbjct: 314 ttgatccacgtgcttgtggttgggcttttggaatgaacatgtttgac 268
>gb|BJ266257.1|BJ266257 BJ266257 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k23 3', mRNA sequence
Length = 382
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
||||||||| | ||||||| |||||||||||||||||||| ||||||
Sbjct: 89 ttgatccacgtgcttgtggttgggcttttggaatgaacatgtttgac 43
>gb|CA596731.1|CA596731 wpa1c.pk014.k18 wpa1c Triticum aestivum cDNA clone wpa1c.pk014.k18
5' end, mRNA sequence
Length = 615
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 400 attcgccgttacaagtatatatgggaacggtatgtgaatatctcacacccgtatgttaga 459
|||| ||| ||||||| ||||||||| ||| |||| ||| |||| ||||| ||||||||
Sbjct: 4 attcaccggtacaagtctatatgggagcggcatgtcaatttctcgcacccacatgttaga 63
Query: 460 gagtgtatgtt 470
|||||||||||
Sbjct: 64 gagtgtatgtt 74
>gb|BJ272424.1|BJ272424 BJ272424 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh11l04 3', mRNA sequence
Length = 544
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 409 tacaagtatatatgggaacggtatgtgaatatctcacacccgtatgttagagagtgtatg 468
||||||| ||||||||| ||| |||| ||| |||| ||||| |||||||||||||||||
Sbjct: 539 tacaagtctatatgggagcggcatgtcaatttctcgcacccacatgttagagagtgtatg 480
Query: 469 tt 470
||
Sbjct: 479 tt 478
>gb|BE424499.1|BE424499 WHE0084_C10_E20ZS Wheat endosperm cDNA library Triticum aestivum
cDNA clone WHE0084_C10_E20, mRNA sequence
Length = 514
Score = 54.0 bits (27), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 400 attcgccgttacaagtatatatgggaacggtatgtgaatatctcacacccgtatgttaga 459
|||| ||| ||||||| ||||||||| ||| |||| ||| |||| ||||| |||||||
Sbjct: 513 attcaccggtacaagtctatatgggagcggcatgtcaatttctcgcacccacatgttagt 454
Query: 460 gagtgtatgtt 470
|||||||||||
Sbjct: 453 gagtgtatgtt 443
>gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3239_C01_F01, mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttga 146
||||||||||||| ||||||||| || |||||
Sbjct: 137 tgtggatgggcttatggaatgaatatatttga 168
>gb|CA619138.1|CA619138 wl1n.pk0041.b1 wl1n Triticum aestivum cDNA clone wl1n.pk0041.b1 5'
end, mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 567 tgccggaaagttccagaggt 586
||||||||||||||||||||
Sbjct: 232 tgccggaaagttccagaggt 251
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,382
Number of Sequences: 636343
Number of extensions: 104382
Number of successful extensions: 26277
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26226
Number of HSP's gapped (non-prelim): 47
length of query: 600
length of database: 367,240,239
effective HSP length: 19
effective length of query: 581
effective length of database: 355,149,722
effective search space: 206341988482
effective search space used: 206341988482
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)