BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3336981.2.1
         (510 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL825764.1|AL825764  AL825764 p:234 Triticum aestivum cDN...   153   1e-035
gb|CD884896.1|CD884896  F1.118B23F010510 F1 Triticum aestivu...    76   3e-012
gb|CD938452.1|CD938452  OV.110A13F010309 OV Triticum aestivu...    46   0.002
gb|CV771699.1|CV771699  FGAS066092 Triticum aestivum FGAS: L...    42   0.036
gb|DR739637.1|DR739637  FGAS084854 Triticum aestivum FGAS: L...    42   0.036
gb|DR733574.1|DR733574  FGAS079332 Triticum aestivum FGAS: L...    40   0.14 

>gb|AL825764.1|AL825764 AL825764 p:234 Triticum aestivum cDNA clone H11_p234_plate_15, mRNA
           sequence
          Length = 526

 Score =  153 bits (77), Expect = 1e-035
 Identities = 113/125 (90%)
 Strand = Plus / Plus

                                                                       
Query: 382 ctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatc 441
           ||||| ||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||
Sbjct: 99  ctggtggagagcatgatgatgatcatcgccgtcatcgtcccagacttcctgatggggatc 158

                                                                       
Query: 442 atcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcctcccc 501
           || || || ||||||||||| || || ||||||||||| |||||||||||||||||||||
Sbjct: 159 attgttggggccggggtgcaaggggtgatgatgctcaatggcggcttcttccgcctcccc 218

                
Query: 502 aacga 506
           |||||
Sbjct: 219 aacga 223



>gb|CD884896.1|CD884896 F1.118B23F010510 F1 Triticum aestivum cDNA clone F1118B23, mRNA
           sequence
          Length = 564

 Score = 75.8 bits (38), Expect = 3e-012
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                       
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
           ||||||||||| ||||| ||||||  |||||| ||  | ||||| |||||||||||||| 
Sbjct: 430 ccggacttcctcatgggcatcatcaccggcgctggcatccagggcgtcatgatgctcaat 489

                                     
Query: 481 ggcggcttcttccgcctccccaacga 506
           ||||||||||||||||| ||| ||||
Sbjct: 490 ggcggcttcttccgcctgccccacga 515




 Score = 40.1 bits (20), Expect = 0.14
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                       
Query: 201 ggagaggctgagcggccactacggcgtgtcggagttcgtcatctccaacaccatctccgc 260
           ||||||||||| ||| |||||||| || |||  |||||| ||| |||||||  |||| ||
Sbjct: 210 ggagaggctgaacgggcactacggtgtctcgtcgttcgtgatcgccaacacagtctcggc 269

                       
Query: 261 cactccatacct 272
            || ||||||||
Sbjct: 270 gacgccatacct 281



>gb|CD938452.1|CD938452 OV.110A13F010309 OV Triticum aestivum cDNA clone OV110A13, mRNA
           sequence
          Length = 708

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 362 tgctctgcgtctgctgcctcctggtcg 388
           ||||||||||||||||||| |||||||
Sbjct: 68  tgctctgcgtctgctgccttctggtcg 42



>gb|CV771699.1|CV771699 FGAS066092 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
           aestivum cDNA, mRNA sequence
          Length = 867

 Score = 42.1 bits (21), Expect = 0.036
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 401 tggtcatcgccgccgtcgtcc 421
           |||||||||||||||||||||
Sbjct: 352 tggtcatcgccgccgtcgtcc 332



>gb|DR739637.1|DR739637 FGAS084854 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
           aestivum cDNA, mRNA sequence
          Length = 1032

 Score = 42.1 bits (21), Expect = 0.036
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 401 tggtcatcgccgccgtcgtcc 421
           |||||||||||||||||||||
Sbjct: 53  tggtcatcgccgccgtcgtcc 33



>gb|DR733574.1|DR733574 FGAS079332 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
           aestivum cDNA, mRNA sequence
          Length = 840

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 362 tgctctgcgtctgctgcctcctgg 385
           ||||||||||||||||||| ||||
Sbjct: 132 tgctctgcgtctgctgccttctgg 109



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,447
Number of Sequences: 636343
Number of extensions: 132447
Number of successful extensions: 39103
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39095
Number of HSP's gapped (non-prelim): 8
length of query: 510
length of database: 367,240,239
effective HSP length: 19
effective length of query: 491
effective length of database: 355,149,722
effective search space: 174378513502
effective search space used: 174378513502
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)