BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230315.2.1
(457 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA721383.1|CA721383 wdk9n.pk001.p9 wdk9n Triticum aestiv... 250 7e-065
gb|CV777756.1|CV777756 FGAS072163 Triticum aestivum FGAS: L... 240 7e-062
gb|CK211986.1|CK211986 FGAS023849 Triticum aestivum FGAS: L... 200 6e-050
gb|BE425995.1|BE425995 WHE0326_A09_A18ZS Wheat unstressed s... 137 7e-031
gb|CA619106.1|CA619106 wl1n.pk0040.d6 wl1n Triticum aestivu... 129 2e-028
gb|CA632323.1|CA632323 wle1n.pk0062.f6 wle1n Triticum aesti... 123 1e-026
gb|BE606718.1|BE606718 WHE0907_G06_N11ZS Wheat 5-15 DAP spi... 117 7e-025
gb|CK210460.1|CK210460 FGAS022276 Triticum aestivum FGAS: L... 117 7e-025
gb|CB307163.1|CB307163 HFIG148 Hessian fly infested cDNA li... 103 1e-020
gb|CA633868.1|CA633868 wle1n.pk0078.g10 wle1n Triticum aest... 96 3e-018
gb|BJ249481.1|BJ249481 BJ249481 Y. Ogihara unpublished cDNA... 64 9e-009
emb|AX660696.1| Sequence 1053 from Patent WO03000906 64 9e-009
gb|BE442559.1|BE442559 WHE1103_D06_H11ZS Wheat etiolated se... 62 4e-008
gb|CD452428.1|CD452428 WHE1103_D06_H11ZT CS wheat etiolated... 62 4e-008
gb|CD878081.1|CD878081 AZO4.101N22R011122 AZO4 Triticum aes... 62 4e-008
gb|BJ221117.1|BJ221117 BJ221117 Y. Ogihara unpublished cDNA... 58 5e-007
gb|BJ250042.1|BJ250042 BJ250042 Y. Ogihara unpublished cDNA... 54 9e-006
gb|BJ252439.1|BJ252439 BJ252439 Y. Ogihara unpublished cDNA... 54 9e-006
gb|AL822121.1|AL822121 AL822121 p:234 Triticum aestivum cDN... 54 9e-006
gb|CK162455.1|CK162455 FGAS015049 Triticum aestivum FGAS: L... 52 3e-005
gb|CA604573.1|CA604573 wr1.pk0041.c12 wr1 Triticum aestivum... 50 1e-004
gb|BJ243936.1|BJ243936 BJ243936 Y. Ogihara unpublished cDNA... 48 5e-004
gb|BJ251252.1|BJ251252 BJ251252 Y. Ogihara unpublished cDNA... 48 5e-004
gb|BJ251714.1|BJ251714 BJ251714 Y. Ogihara unpublished cDNA... 48 5e-004
gb|BJ285920.1|BJ285920 BJ285920 Y. Ogihara unpublished cDNA... 48 5e-004
emb|AX660733.1| Sequence 1090 from Patent WO03000906 48 5e-004
gb|BJ254306.1|BJ254306 BJ254306 Y. Ogihara unpublished cDNA... 42 0.032
gb|BJ254574.1|BJ254574 BJ254574 Y. Ogihara unpublished cDNA... 42 0.032
gb|BJ244140.1|BJ244140 BJ244140 Y. Ogihara unpublished cDNA... 40 0.13
gb|BJ249930.1|BJ249930 BJ249930 Y. Ogihara unpublished cDNA... 40 0.13
gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA... 40 0.13
gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA... 40 0.13
>gb|CA721383.1|CA721383 wdk9n.pk001.p9 wdk9n Triticum aestivum cDNA clone wdk9n.pk001.p9 5'
end, mRNA sequence
Length = 482
Score = 250 bits (126), Expect = 7e-065
Identities = 243/282 (86%)
Strand = Plus / Minus
Query: 165 gggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggtgaaggcg 224
||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |
Sbjct: 353 gggatggacgtgccggcgagccagacgtcgccgtcgatgaaggaccccacggtgaaggtg 294
Query: 225 ctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgcccggacgtg 284
|||||||||| ||||| ||| | ||||||||||| ||||| ||||| |||||||||
Sbjct: 293 ctggcctcggacgcgctaatgacgccgcggtaccccatccacgacacccggccggacgtg 234
Query: 285 ccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg 344
||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||
Sbjct: 233 ccggcgccgggccccgtgttctggtactcggcgtagtagagcgtgtcaagcgcgaaggtg 174
Query: 345 ccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactgcaggtac 404
|||| |||| ||||||||||||| |||||||| | ||| ||||||||||| | | ||
Sbjct: 173 ccgtcccacgcgagccagccggcggggtcgacgacgctgtcgagctccgactgaatgaac 114
Query: 405 accgtgcgggagtactgcttccatgggcggcccaggtaggtc 446
|| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 113 acggtgcgcgagtactgcttccacggtcggccgaggtaggtc 72
>gb|CV777756.1|CV777756 FGAS072163 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 819
Score = 240 bits (121), Expect = 7e-062
Identities = 244/285 (85%)
Strand = Plus / Plus
Query: 165 gggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggtgaaggcg 224
||||||||||||||||||||||||| |||||||||||||||| || || ||||||| |
Sbjct: 411 gggatggacgtgccggcgagccagacgtcgccgtcgatgaaggaccccaccgtgaaggtg 470
Query: 225 ctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgcccggacgtg 284
|||||||| | ||||| ||||| | ||||||||| ||||| ||||| |||||||||
Sbjct: 471 ctggcctcagacgcgctaatgatgccacggtaccccatccacgacacccggccggacgtg 530
Query: 285 ccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg 344
||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||
Sbjct: 531 ccggcgccgggccccgtgttctggtactcggcgtagtatagcgtgtcgagcgcgaaggtg 590
Query: 345 ccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactgcaggtac 404
|||| |||| ||||||||||||| |||||||| | ||| ||||||||||| | | |
Sbjct: 591 ccgtcccacgcgagccagccggcggggtcgacgacgctgtcgagctccgactggatgaag 650
Query: 405 accgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| ||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 651 acggtgcgcgagtactgcttccacggccggcccaggtaggtcttg 695
>gb|CK211986.1|CK211986 FGAS023849 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1075
Score = 200 bits (101), Expect = 6e-050
Identities = 239/285 (83%)
Strand = Plus / Plus
Query: 165 gggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggtgaaggcg 224
|||||||| |||||||||||||||| ||| |||||||||||| || || ||||| | |
Sbjct: 278 gggatggatgtgccggcgagccagacgtcaccgtcgatgaaggaccccaccgtgaaagtg 337
Query: 225 ctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgcccggacgtg 284
|||||||||| ||||| ||||| ||||||||||||||||| ||||| |||| |||
Sbjct: 338 ctggcctcggacgcgctaatgatgccgcggtaccccttccacgccacccgggcggatgtg 397
Query: 285 ccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg 344
|| |||||||||||||||||| ||||||| ||||||| || ||||||||||||||| ||
Sbjct: 398 cccgcgccgggccccgtgttctggtactcggcgtagtaaagtgtgtcgagcgcgaaggtg 457
Query: 345 ccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactgcaggtac 404
|||| |||| ||||||| ||||| |||||||| | ||| ||||||||||||| | |
Sbjct: 458 ccgtcccacgcgagccatccggcagggtcgacgacgctgtcgagctccgactgcatgaaa 517
Query: 405 accgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 518 acggtgcgcgagtactgcttccacgggcggcccagataagtcttg 562
>gb|BE425995.1|BE425995 WHE0326_A09_A18ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0326_A09_A18, mRNA
sequence
Length = 518
Score = 137 bits (69), Expect = 7e-031
Identities = 147/173 (84%)
Strand = Plus / Minus
Query: 277 cggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcg 336
|||| ||||| |||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct: 510 cggatgtgcccgcgccgggccccgtgttctggtactcggcgtagtagagtgtgtcgagcg 451
Query: 337 cgaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgact 396
||||| |||||| |||| ||||||| ||||| |||||||| | ||| ||||||||||
Sbjct: 450 cgaaggtgccgtcccacgcgagccatccggcagggtcgacgacgctgtcgagctccgact 391
Query: 397 gcaggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
||| | | || ||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 390 gcatgaaaacggtgcgcgagtactgcttccacggccggcccagataagtcttg 338
>gb|CA619106.1|CA619106 wl1n.pk0040.d6 wl1n Triticum aestivum cDNA clone wl1n.pk0040.d6 5'
end, mRNA sequence
Length = 468
Score = 129 bits (65), Expect = 2e-028
Identities = 122/141 (86%)
Strand = Plus / Minus
Query: 165 gggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggtgaaggcg 224
||||||||||||||||||||||||| |||||||||||||||| || || ||||||| |
Sbjct: 143 gggatggacgtgccggcgagccagacgtcgccgtcgatgaaggaccccaccgtgaaggtg 84
Query: 225 ctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgcccggacgtg 284
|||||||| | ||||| ||||| | ||||||||| ||||| ||||| |||||||||
Sbjct: 83 ctggcctcagacgcgctaatgatgccacggtaccccatccacgacacccggccggacgtg 24
Query: 285 ccggcgccgggccccgtgttc 305
|||||||||||||||||||||
Sbjct: 23 ccggcgccgggccccgtgttc 3
>gb|CA632323.1|CA632323 wle1n.pk0062.f6 wle1n Triticum aestivum cDNA clone wle1n.pk0062.f6
5' end, mRNA sequence
Length = 492
Score = 123 bits (62), Expect = 1e-026
Identities = 151/177 (85%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 165 gggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggtgaaggcg 224
||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |
Sbjct: 289 gggatggacgtgccggcgagccagacgtcgccgtcgatgaag-gacccacggtgaaggtg 347
Query: 225 ctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgcccggacgtg 284
|||| ||||| ||||| ||| | ||||||| ||| ||||| ||||| |||||||||
Sbjct: 348 ctgggctcggacgcgctaatgacgccgcggta-cccatccacgacacccggccggacgtg 406
Query: 285 ccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||||| ||||||||| ||||||| ||||||| |||||||| ||||| |||
Sbjct: 407 ccggcgccggg-cccgtgttccggtactcggcgtagtaaagcgtgtcaagcgcnaag 462
>gb|BE606718.1|BE606718 WHE0907_G06_N11ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0907_G06_N11, mRNA sequence
Length = 479
Score = 117 bits (59), Expect = 7e-025
Identities = 119/139 (85%)
Strand = Plus / Minus
Query: 311 ctcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgg 370
|||| ||||||| |||||||||||||||||| |||||| |||| ||||||||||||| ||
Sbjct: 479 ctcggcgtagtatagcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggcggg 420
Query: 371 gtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgg 430
|||||| | ||| ||||||||||| | | | || ||||| |||||||||||||| ||
Sbjct: 419 gtcgacgacgctgtcgagctccgactggatgaagacggtgcgcgagtactgcttccacgg 360
Query: 431 gcggcccaggtaggtcttg 449
||||||||||||||||||
Sbjct: 359 ccggcccaggtaggtcttg 341
>gb|CK210460.1|CK210460 FGAS022276 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1102
Score = 117 bits (59), Expect = 7e-025
Identities = 72/75 (96%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 287 ggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgcc 346
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 910 ggcgccgggccccg-gttcatgtactcggcgtagtagagcgtgtcgagcgcgaaggtgcc 852
Query: 347 gttccactcgagcca 361
|||||||||||||||
Sbjct: 851 gttccactcgagcca 837
>gb|CB307163.1|CB307163 HFIG148 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 540
Score = 103 bits (52), Expect = 1e-020
Identities = 58/60 (96%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 536 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaaggtgccgttccactcgagcca 477
>gb|CA633868.1|CA633868 wle1n.pk0078.g10 wle1n Triticum aestivum cDNA clone
wle1n.pk0078.g10 5' end, mRNA sequence
Length = 450
Score = 95.6 bits (48), Expect = 3e-018
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 165 gggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggtgaaggcg 224
||||||||||||||||||||||||| |||||||||||||||| || || ||||||| |
Sbjct: 124 gggatggacgtgccggcgagccagacgtcgccgtcgatgaaggaccccaccgtgaaggtg 65
Query: 225 ctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgcccggacgtg 284
|||||||| | ||||| ||||| | ||||||||| ||||| ||||| |||||||||
Sbjct: 64 ctggcctcagacgcgctaatgatgccacggtaccccatccacgacacccggccggacgtg 5
Query: 285 ccgg 288
||||
Sbjct: 4 ccgg 1
>gb|BJ249481.1|BJ249481 BJ249481 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf11b24 3', mRNA sequence
Length = 590
Score = 63.9 bits (32), Expect = 9e-009
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 283 tgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtg 329
|||||||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 301 tgccggcgccaggccctgtgttcatgtactcaccgtagtanagcgtg 347
>emb|AX660696.1| Sequence 1053 from Patent WO03000906
Length = 573
Score = 63.9 bits (32), Expect = 9e-009
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 306 atgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||| ||||||||||||||||||||||||||
Sbjct: 289 atgtactcggcgtagtagagcgtgtcgagcgcgaag 254
>gb|BE442559.1|BE442559 WHE1103_D06_H11ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1103_D06_H11,
mRNA sequence
Length = 347
Score = 61.9 bits (31), Expect = 4e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaag 341
|||||||| ||||||||||||||||||||||||||
Sbjct: 49 tgtactcggcgtagtagagcgtgtcgagcgcgaag 15
>gb|CD452428.1|CD452428 WHE1103_D06_H11ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1103_D06_H11,
mRNA sequence
Length = 357
Score = 61.9 bits (31), Expect = 4e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaag 341
|||||||| ||||||||||||||||||||||||||
Sbjct: 299 tgtactcggcgtagtagagcgtgtcgagcgcgaag 333
>gb|CD878081.1|CD878081 AZO4.101N22R011122 AZO4 Triticum aestivum cDNA clone AZO4101N22,
mRNA sequence
Length = 621
Score = 61.9 bits (31), Expect = 4e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaag 341
|||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgtactcggcgtagtagagcgtgtcgagcgcgaag 475
>gb|BJ221117.1|BJ221117 BJ221117 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh23f23 3', mRNA sequence
Length = 340
Score = 58.0 bits (29), Expect = 5e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 287 ggcgccgggccccgtgttcatgtactcgccgta 319
||||||||||||||||||||||||||| |||||
Sbjct: 308 ggcgccgggccccgtgttcatgtactccccgta 340
>gb|BJ250042.1|BJ250042 BJ250042 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14o03 3', mRNA sequence
Length = 706
Score = 54.0 bits (27), Expect = 9e-006
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgc 345
||||||||||||| |||||| |||| ||||| |||| || ||||| |||||| ||
Sbjct: 322 cggcgccgggcccggtgttctccacctcggcgtagaagagggtctcgagggcgaagtcgc 381
Query: 346 cgttccactcgagccagcc 364
|||||||||||||||||||
Sbjct: 382 cgttccactcgagccagcc 400
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 413 ggagtactgcttccatgggcggcccaggtaggtcttg 449
|||||||| |||||||||||| ||||||||||||||
Sbjct: 449 ggagtactccttccatgggcgcgccaggtaggtcttg 485
>gb|BJ252439.1|BJ252439 BJ252439 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24f19 3', mRNA sequence
Length = 668
Score = 54.0 bits (27), Expect = 9e-006
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgc 345
||||||||||||| |||||| |||| ||||| |||| || ||||| |||||| ||
Sbjct: 282 cggcgccgggcccggtgttctccacctcggcgtagaagagggtctcgagggcgaagtcgc 341
Query: 346 cgttccactcgagccagcc 364
|||||||||||||||||||
Sbjct: 342 cgttccactcgagccagcc 360
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 413 ggagtactgcttccatgggcggcccaggtaggtcttg 449
|||||||| |||||||||||| ||||||||||||||
Sbjct: 409 ggagtactccttccatgggcgcgccaggtaggtcttg 445
>gb|AL822121.1|AL822121 AL822121 p:234 Triticum aestivum cDNA clone
A09_p234_plate_20_run_2, mRNA sequence
Length = 576
Score = 54.0 bits (27), Expect = 9e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaag 341
|||||| | ||||||||||||||||||||||||||
Sbjct: 509 tgtactaggcgtagtagagcgtgtcgagcgcgaag 475
>gb|CK162455.1|CK162455 FGAS015049 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1082
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 403 acaccgtgcgggagtactgcttccatgggcggcccagg 440
|||||||||||||||||| |||||| || |||||||||
Sbjct: 402 acaccgtgcgggagtactccttccagggccggcccagg 439
Score = 42.1 bits (21), Expect = 0.032
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 309 tactcgccgtagtagagcgtgtcgagcgcgaag 341
||||| |||||||||||||| | ||||||||||
Sbjct: 308 tactccccgtagtagagcgtcttgagcgcgaag 340
>gb|CA604573.1|CA604573 wr1.pk0041.c12 wr1 Triticum aestivum cDNA clone wr1.pk0041.c12 5'
end, mRNA sequence
Length = 602
Score = 50.1 bits (25), Expect = 1e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||| ||||| | ||| |||||||| | ||||||||||||||||||| ||||
Sbjct: 286 cggcgcccggcccggagttgttgtactcggcatagtagagcgtgtcgagcgngaag 231
>gb|BJ243936.1|BJ243936 BJ243936 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13h13 5', mRNA sequence
Length = 582
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||||||||| ||||||||||
Sbjct: 536 actcggcgtagtagagcgtcttgagcgcgaagtcgccgttccac 493
>gb|BJ251252.1|BJ251252 BJ251252 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19e14 3', mRNA sequence
Length = 613
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||||||||| ||||||||||
Sbjct: 360 actcggcgtagtagagcgtcttgagcgcgaagtcgccgttccac 403
>gb|BJ251714.1|BJ251714 BJ251714 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf20e17 3', mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||||||||| ||||||||||
Sbjct: 371 actcggcgtagtagagcgtcttgagcgcgaagtcgccgttccac 414
>gb|BJ285920.1|BJ285920 BJ285920 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr13h13 3', mRNA sequence
Length = 697
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||||||||| ||||||||||
Sbjct: 399 actcggcgtagtagagcgtcttgagcgcgaagtcgccgttccac 442
>emb|AX660733.1| Sequence 1090 from Patent WO03000906
Length = 712
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 285 ccggcgccgggccccgtgttcatgtactcgccgtagtagagcgt 328
|||||||||||||| ||||| ||||||| |||||||||||||
Sbjct: 320 ccggcgccgggcccggtgttggcgtactcggcgtagtagagcgt 277
>gb|BJ254306.1|BJ254306 BJ254306 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf5d01 3', mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.032
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 285 ccggcgccgggccccgtgttcatgtactcgccgtagtagagcgt 328
|||||||||||||| ||||| ||||||| |||| ||||||||
Sbjct: 335 ccggcgccgggcccggtgttggcgtactcggcgtantagagcgt 378
>gb|BJ254574.1|BJ254574 BJ254574 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf6d01 3', mRNA sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.032
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 285 ccggcgccgggccccgtgttcatgtactcgccgtagtagagcgt 328
|||||||||||||| ||||| ||||||| |||| ||||||||
Sbjct: 326 ccggcgccgggcccggtgttggcgtactcggcgtantagagcgt 369
>gb|BJ244140.1|BJ244140 BJ244140 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14g15 5', mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||| ||||| ||||||||||
Sbjct: 468 actcggcgtagtagagcgtcttgagcccgaagtcgccgttccac 425
>gb|BJ249930.1|BJ249930 BJ249930 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14g15 3', mRNA sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||| ||||| ||||||||||
Sbjct: 392 actcggcgtagtagagcgtcttgagcccgaagtcgccgttccac 435
>gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf9k15 3', mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||| ||||| ||||||||||
Sbjct: 403 actcggcgtagtagagcgtcttgagcccgaagtcgccgttccac 446
>gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19g21 3', mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 310 actcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||| ||||||||||||| | |||| ||||| ||||||||||
Sbjct: 373 actcggcgtagtagagcgtcttgagcccgaagtcgccgttccac 416
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,212
Number of Sequences: 636343
Number of extensions: 198212
Number of successful extensions: 50967
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50888
Number of HSP's gapped (non-prelim): 62
length of query: 457
length of database: 367,240,239
effective HSP length: 19
effective length of query: 438
effective length of database: 355,149,722
effective search space: 155555578236
effective search space used: 155555578236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)