BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ245701.1|BJ245701 BJ245701 Y. Ogihara unpublished cDNA... 216 3e-054
gb|BQ903526.1|BQ903526 Ta03_15d09_R Ta03_AAFC_ECORC_Fusariu... 208 6e-052
gb|CV769347.1|CV769347 FGAS063738 Triticum aestivum FGAS: L... 194 1e-047
gb|CV769371.1|CV769371 FGAS063762 Triticum aestivum FGAS: L... 194 1e-047
gb|BJ247566.1|BJ247566 BJ247566 Y. Ogihara unpublished cDNA... 190 1e-046
gb|CK161286.1|CK161286 FGAS013852 Triticum aestivum FGAS: L... 186 2e-045
gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA... 182 4e-044
gb|BF484839.1|BF484839 WHE2320_C04_F08ZS Wheat pre-anthesis... 82 1e-013
gb|CV778342.1|CV778342 FGAS072750 Triticum aestivum FGAS: L... 80 4e-013
gb|AL812363.1|AL812363 AL812363 e:310 Triticum aestivum cDN... 72 1e-010
gb|BJ208137.1|BJ208137 BJ208137 Y. Ogihara unpublished cDNA... 52 9e-005
gb|BJ267963.1|BJ267963 BJ267963 Y. Ogihara unpublished cDNA... 52 9e-005
gb|CA728781.1|CA728781 wdi1c.pk005.m2 wdi1c Triticum aestiv... 52 9e-005
gb|CD898293.1|CD898293 G174.108K23F010821 G174 Triticum aes... 52 9e-005
gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivu... 52 9e-005
gb|BJ253655.1|BJ253655 BJ253655 Y. Ogihara unpublished cDNA... 50 3e-004
gb|BJ265360.1|BJ265360 BJ265360 Y. Ogihara unpublished cDNA... 50 3e-004
gb|CA596211.1|CA596211 wpa1c.pk012.b17 wpa1c Triticum aesti... 50 3e-004
gb|AL812716.1|AL812716 AL812716 e:310 Triticum aestivum cDN... 44 0.022
gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA... 42 0.085
>gb|BJ245701.1|BJ245701 BJ245701 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf1m10 5', mRNA sequence
Length = 614
Score = 216 bits (109), Expect = 3e-054
Identities = 261/311 (83%), Gaps = 3/311 (0%)
Strand = Plus / Plus
Query: 369 caacgacgtcatgctcttcggcgccagcgactcctggccgcaggaccagatcatgcagat 428
||||||||||||||||||||| |||||||| | || ||||| |||||||||||||
Sbjct: 1 caacgacgtcatgctcttcggttccagcgacagcaaccccaaggacgagatcatgcagat 60
Query: 429 caccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaaggtgccgctg 488
|||||||||||||||||||||||| || ||||| |||||| | |||||||||||||| ||
Sbjct: 61 caccgtcgccttcaaccacttcggaagaggcctcgtgcagagaatgccaaggtgccgatg 120
Query: 489 gggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcgg 548
||| ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 121 gggattcttccacgtggtgaacaacgactacacccactggctcatgtacgccatcggcgg 180
Query: 549 cggcgacgcgccaaccatcatcagccagggcaaccgctacatagcaccaccaaacatcgc 608
| || | || ||||||||||||||||| ||||||||||| || || || ||| | ||
Sbjct: 181 cagcaagaacccgaccatcatcagccaggggaaccgctacatcgcgccgccgaacctggc 240
Query: 609 cgccaaagtgatcaccaa---gcactacgcggaagaaggcgtgtggaagaactgggtgtg 665
|| || ||||||| || || |||||||| || | || ||||||||||||||||||
Sbjct: 241 ggcgaagctgatcacgaagcggctgtacgcggaggaggccgagtggaagaactgggtgtg 300
Query: 666 gcacacggagg 676
|||| ||||||
Sbjct: 301 gcactcggagg 311
>gb|BQ903526.1|BQ903526 Ta03_15d09_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_15d09, mRNA
sequence
Length = 367
Score = 208 bits (105), Expect = 6e-052
Identities = 257/309 (83%)
Strand = Plus / Minus
Query: 227 ccgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctcca 286
|||||||||||||| ||||| ||||| ||||||||| || ||| | |||||| ||||||
Sbjct: 309 ccgacggcgacggcgtctccatcttcaacgccaccaaagtgtgggtggaccacctctcca 250
Query: 287 tgtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatct 346
|| || |||||||||||| | |||||||| ||| | ||||||| ||||| |||
Sbjct: 249 tggataattgcgaggacggcatgatcgacgtggtggccatgtccacggccgtcaccgtct 190
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| |||| | || ||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 189 ccaacacccacctggcccaccacaacgacgtgatgctcttcggcgccagcgaccacaagc 130
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
|| ||||| || | |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 129 cggaggacaaggtgatgcaggtcaccgtcgccttcaaccacttcgggaggggcctggtgc 70
Query: 467 agcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcact 526
|| ||||||| | ||||||| |||||||||||||| |||||||||| |||||| |||
Sbjct: 69 agaggatgccwygctgccgctacggcttcttccacgtcgtcaacaacgrctacaccract 10
Query: 527 ggctcatgt 535
|||||||||
Sbjct: 9 ggctcatgt 1
>gb|CV769347.1|CV769347 FGAS063738 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 864
Score = 194 bits (98), Expect = 1e-047
Identities = 170/194 (87%)
Strand = Plus / Plus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||| ||||||||||||||||||||||||| || |||||||||||| ||||||| |
Sbjct: 129 atgcaggtcaccgtcgccttcaaccacttcgggagaggcctggtgcagaggatgcctcgc 188
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 189 tgccgctacggcttcttccacgtcgtcaacaacgactacaccaactggctcatgtacgcc 248
Query: 541 attggcggcggcgacgcgccaaccatcatcagccagggcaaccgctacatagcaccacca 600
|| || ||| || |||||| |||||| |||||||||| |||||||||| |||||||||
Sbjct: 249 atcggaggcagcagcgcgcccaccatcctcagccaggggaaccgctacagagcaccaccc 308
Query: 601 aacatcgccgccaa 614
||||| || |||||
Sbjct: 309 aacatggctgccaa 322
>gb|CV769371.1|CV769371 FGAS063762 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 852
Score = 194 bits (98), Expect = 1e-047
Identities = 170/194 (87%)
Strand = Plus / Plus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||| ||||||||||||||||||||||||| || |||||||||||| ||||||| |
Sbjct: 127 atgcaggtcaccgtcgccttcaaccacttcgggagaggcctggtgcagaggatgcctcgc 186
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 187 tgccgctacggcttcttccacgtcgtcaacaacgactacaccaactggctcatgtacgcc 246
Query: 541 attggcggcggcgacgcgccaaccatcatcagccagggcaaccgctacatagcaccacca 600
|| || ||| || |||||| |||||| |||||||||| |||||||||| |||||||||
Sbjct: 247 atcggaggcagcagcgcgcccaccatcctcagccaggggaaccgctacagagcaccaccc 306
Query: 601 aacatcgccgccaa 614
||||| || |||||
Sbjct: 307 aacatggctgccaa 320
>gb|BJ247566.1|BJ247566 BJ247566 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2m10 5', mRNA sequence
Length = 453
Score = 190 bits (96), Expect = 1e-046
Identities = 222/264 (84%), Gaps = 3/264 (1%)
Strand = Plus / Plus
Query: 416 agatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgc 475
||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||
Sbjct: 24 agatcatgcagatcaccgtcgccttcaaccacttcggaagaggcctcgtgcagagaatgc 83
Query: 476 caaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgt 535
|||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||
Sbjct: 84 caaggtgccgatggggattcttccacgtggtgaacaacgactacacccactggctcatgt 143
Query: 536 acgccattggcggcggcgacgcgccaaccatcatcagccagggcaaccgctacatagcac 595
||||||| |||||| || | || |||||||| |||||||| ||||| ||||| || |
Sbjct: 144 acgccatcggcggcagcaagaacccgaccatcatnagccaggggaaccgntacatcgcgc 203
Query: 596 caccaaacatcgccgccaaagtgatcaccaa---gcactacgcggaagaaggcgtgtgga 652
| || ||| | || || || ||||||| || || |||||||| || | || |||||
Sbjct: 204 cgccgaacctggcggcgaagctgatcacgaagcggctgtacgcggaggaggccgagtgga 263
Query: 653 agaactgggtgtggcacacggagg 676
||||||||||||||||| ||||||
Sbjct: 264 agaactgggtgtggcactcggagg 287
>gb|CK161286.1|CK161286 FGAS013852 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 899
Score = 186 bits (94), Expect = 2e-045
Identities = 169/194 (87%)
Strand = Plus / Plus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||| ||||||||||||||||||||||||| || |||||||||||| ||||||| |
Sbjct: 123 atgcaggtcaccgtcgccttcaaccacttcgggagaggcctggtgcagaggatgcctcgc 182
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 183 tgccgctacggcttcttccacgtcgtcaacaacgactacaccaactggctcatgtacgcc 242
Query: 541 attggcggcggcgacgcgccaaccatcatcagccagggcaaccgctacatagcaccacca 600
|| || ||| || |||||| |||||| |||||||||| ||||| |||| |||||||||
Sbjct: 243 atcggaggcagcagcgcgcccaccatcgtcagccaggggaaccggtacagagcaccaccc 302
Query: 601 aacatcgccgccaa 614
||||| || |||||
Sbjct: 303 aacatggctgccaa 316
Score = 52.0 bits (26), Expect = 9e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 365 accacaacgacgtcatgctcttcggcgcca 394
||||||||||||| ||||||||||||||||
Sbjct: 67 accacaacgacgtgatgctcttcggcgcca 96
>gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA clone D07_e29_plate_1, mRNA
sequence
Length = 688
Score = 182 bits (92), Expect = 4e-044
Identities = 267/323 (82%), Gaps = 2/323 (0%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||| ||||| || ||||| ||| || ||| |||||||||||| | |||||
Sbjct: 319 cgacggcgacggcgtctccatcctctcctccagcagcgtgtggatcgaccacgtgtccat 378
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagag-ctccacggggatcaccatct 346
||||| ||||| ||||||||||||||||| || ||| | |||||| | |||||| | |
Sbjct: 379 gtccagctgcgccgacggcctcatcgacgtggt-cagcggctccaccgccatcaccgtgt 437
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| || || |||| ||||| |||||||| || || | |
Sbjct: 438 ccaacagccacttcaccaagcatgaccacgtgatgctgttcggcgctngcaacacggagg 497
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
||||||| ||| |||||| ||||||| || |||||||||||||||| ||| |||||||
Sbjct: 498 agcaggacaggatgatgcaggtcaccgtggcgttcaaccacttcggcaaggggctggtgc 557
Query: 467 agcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcact 526
|||||||||| | ||||||| ||||||||||| || || |||||||||||||||||||
Sbjct: 558 agcggatgccccgctgccgcttcggcttcttccaggtggtgaacaacgactacacgcact 617
Query: 527 ggctcatgtacgccattggcggc 549
||| ||||||||||| ||||||
Sbjct: 618 ggcagatgtacgccatcggcggc 640
Score = 75.8 bits (38), Expect = 6e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 28 ctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtg 87
||||| |||||||| || ||| |||| ||||||| ||||||||||||||||||||||||
Sbjct: 122 ctctcccaggagctcatcgtgaacagcaacaagacgatcgacgggcgcggcgcgcaggtg 181
Query: 88 cacatc 93
||||||
Sbjct: 182 cacatc 187
>gb|BF484839.1|BF484839 WHE2320_C04_F08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2320_C04_F08, mRNA sequence
Length = 368
Score = 81.8 bits (41), Expect = 1e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 52 agcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggatc 111
|||||||||||||||||||||||||| |||||||||||| | |||||||||| ||| ||
Sbjct: 34 agcgacaagaccatcgacgggcgcggggcgcaggtgcacgtggccaacggcggtgggctc 93
Query: 112 acggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacg 160
|| | |||| | | |||||||||||| ||||||| ||||||||||
Sbjct: 94 accatccagcaccagaacaacgtcatcatcaacaacctccacgtgcacg 142
Score = 58.0 bits (29), Expect = 1e-006
Identities = 128/161 (79%)
Strand = Plus / Plus
Query: 226 gccgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctcc 285
||||||||||||||| ||||| ||||| ||||||||| || ||| | |||||| | |||
Sbjct: 208 gccgacggcgacggcgtctccatcttcaacgccaccaaagtgtgggtggaccacctgtcc 267
Query: 286 atgtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatc 345
||| || |||||||||||| | |||||||| ||| | ||||||| ||||| ||
Sbjct: 268 atggataattgcgaggacggcatgatcgacgtggtggccatgtccacggccgtcaccgtc 327
Query: 346 tccaactgccacttcaccaaccacaacgacgtcatgctctt 386
|||||| |||| | || ||||||||||||| ||||||||
Sbjct: 328 tccaacacccacctggcccaccacaacgacgtgatgctctt 368
>gb|CV778342.1|CV778342 FGAS072750 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 829
Score = 79.8 bits (40), Expect = 4e-013
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 52 agcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcg 103
|||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 678 agcgacaagaccatcgacgggcgcggggcgcaggtgcacgtggccaacggcg 729
>gb|AL812363.1|AL812363 AL812363 e:310 Triticum aestivum cDNA clone A04_e310_plate_3, mRNA
sequence
Length = 529
Score = 71.9 bits (36), Expect = 1e-010
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 217 cgcaccagggccgacggcgacggcatctccctcttctccgccaccaacgtctggatcgac 276
||||||| |||||||||||||| | ||||| ||||| ||||| | |||||||| |||||
Sbjct: 45 cgcaccatggccgacggcgacgccgtctccatcttcggcgccagccacgtctgggtcgac 104
Query: 277 cacatctccatgtccaactgcgaggacggcctcatcgacg 316
||| |||| | |||||||||| ||||||||| ||||||
Sbjct: 105 cactgctccctctccaactgcgccgacggcctcgtcgacg 144
Score = 60.0 bits (30), Expect = 4e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcga 554
||||||||| || ||||| |||||||| |||||| ||||||||||| || || |||
Sbjct: 323 cttccacgtggtgaacaatgactacacccactgggagatgtacgccatcggagggagcgc 382
Query: 555 cgcgccaaccatcatcagccagggcaaccgctac 588
|| ||| ||||||| ||||||||| |||||||||
Sbjct: 383 cgagccgaccatcaacagccaggggaaccgctac 416
>gb|BJ208137.1|BJ208137 BJ208137 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6p12 5', mRNA sequence
Length = 585
Score = 52.0 bits (26), Expect = 9e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcga 554
|||||| || || ||||| |||||||| |||||| ||||||||||| || || |||
Sbjct: 326 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcggagggagcgc 385
Query: 555 cgcgccaaccatcatcagccagggcaaccgctac 588
|| ||| ||||||| ||||||||| |||||||||
Sbjct: 386 cgagccgaccatcaacagccaggggaaccgctac 419
>gb|BJ267963.1|BJ267963 BJ267963 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh14e12 5', mRNA sequence
Length = 654
Score = 52.0 bits (26), Expect = 9e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcga 554
|||||| || || ||||| |||||||| |||||| ||||||||||| || || |||
Sbjct: 30 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcggagggagcgc 89
Query: 555 cgcgccaaccatcatcagccagggcaaccgctac 588
|| ||| ||||||| ||||||||| |||||||||
Sbjct: 90 cgagccgaccatcaacagccaggggaaccgctac 123
>gb|CA728781.1|CA728781 wdi1c.pk005.m2 wdi1c Triticum aestivum cDNA clone wdi1c.pk005.m2 5'
end, mRNA sequence
Length = 589
Score = 52.0 bits (26), Expect = 9e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcga 554
|||||| || || ||||| |||||||| |||||| ||||||||||| || || |||
Sbjct: 28 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcggagggagcgc 87
Query: 555 cgcgccaaccatcatcagccagggcaaccgctac 588
|| ||| ||||||| ||||||||| |||||||||
Sbjct: 88 cgagccgaccatcaacagccaggggaaccgctac 121
>gb|CD898293.1|CD898293 G174.108K23F010821 G174 Triticum aestivum cDNA clone G174108K23,
mRNA sequence
Length = 734
Score = 52.0 bits (26), Expect = 9e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcga 554
|||||| || || ||||| |||||||| |||||| ||||||||||| || || |||
Sbjct: 204 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcggagggagcgc 263
Query: 555 cgcgccaaccatcatcagccagggcaaccgctac 588
|| ||| ||||||| ||||||||| |||||||||
Sbjct: 264 cgagccgaccatcaacagccaggggaaccgctac 297
>gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivum cDNA clone OV110G14, mRNA
sequence
Length = 708
Score = 52.0 bits (26), Expect = 9e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcga 554
|||||| || || ||||| |||||||| |||||| ||||||||||| || || |||
Sbjct: 394 cttccatgtggtgaacaatgactacacccactgggagatgtacgccatcggagggagcgc 453
Query: 555 cgcgccaaccatcatcagccagggcaaccgctac 588
|| ||| ||||||| ||||||||| |||||||||
Sbjct: 454 cgagccgaccatcaacagccaggggaaccgctac 487
>gb|BJ253655.1|BJ253655 BJ253655 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2m10 3', mRNA sequence
Length = 481
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggagg 676
|||||||||||||||||||||| ||||||
Sbjct: 474 gtggaagaactgggtgtggcactcggagg 446
>gb|BJ265360.1|BJ265360 BJ265360 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh21k15 3', mRNA sequence
Length = 313
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggagg 676
|||||||||||||||||||||| ||||||
Sbjct: 301 gtggaagaactgggtgtggcactcggagg 273
>gb|CA596211.1|CA596211 wpa1c.pk012.b17 wpa1c Triticum aestivum cDNA clone wpa1c.pk012.b17
5' end, mRNA sequence
Length = 541
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggagg 676
|||||||||||||||||||||| ||||||
Sbjct: 58 gtggaagaactgggtgtggcactcggagg 86
>gb|AL812716.1|AL812716 AL812716 e:310 Triticum aestivum cDNA clone H11_e310_plate_7, mRNA
sequence
Length = 540
Score = 44.1 bits (22), Expect = 0.022
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcga 554
||||||||| | ||||| |||||||| |||||| ||||||||||| || || |||
Sbjct: 329 cttccacgtgctgaacaatgactacacccactgggagatgtacgccatcggagggagcgc 388
Query: 555 cgcgccaaccatcatcagccagggcaaccg 584
|| ||| ||||||| ||||||||| |||||
Sbjct: 389 cgagccgaccatcaacagccaggggaaccg 418
>gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA clone B01_a11_plate_16, mRNA
sequence
Length = 240
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 caagaccatcgacgggcgcgg 77
|||||||||||||||||||||
Sbjct: 220 caagaccatcgacgggcgcgg 240
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 339,373
Number of Sequences: 636343
Number of extensions: 339373
Number of successful extensions: 97957
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97899
Number of HSP's gapped (non-prelim): 57
length of query: 1172
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1152
effective length of database: 354,513,379
effective search space: 408399412608
effective search space used: 408399412608
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)