BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.2
(682 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ248931.1|BJ248931 BJ248931 Y. Ogihara unpublished cDNA... 343 1e-092
gb|BJ246629.1|BJ246629 BJ246629 Y. Ogihara unpublished cDNA... 315 2e-084
gb|BJ253558.1|BJ253558 BJ253558 Y. Ogihara unpublished cDNA... 315 2e-084
gb|BJ252567.1|BJ252567 BJ252567 Y. Ogihara unpublished cDNA... 289 1e-076
gb|BJ251356.1|BJ251356 BJ251356 Y. Ogihara unpublished cDNA... 283 8e-075
gb|BJ245473.1|BJ245473 BJ245473 Y. Ogihara unpublished cDNA... 274 7e-072
gb|BJ249864.1|BJ249864 BJ249864 Y. Ogihara unpublished cDNA... 224 6e-057
gb|CA741798.1|CA741798 wia1c.pk003.h2 wia1c Triticum aestiv... 143 2e-032
gb|CD454470.1|CD454470 WHE2319_C03_F05ZT CS wheat pre-anthe... 143 2e-032
gb|BJ249502.1|BJ249502 BJ249502 Y. Ogihara unpublished cDNA... 141 7e-032
gb|BJ244077.1|BJ244077 BJ244077 Y. Ogihara unpublished cDNA... 125 4e-027
gb|BJ247485.1|BJ247485 BJ247485 Y. Ogihara unpublished cDNA... 107 1e-021
gb|BJ253848.1|BJ253848 BJ253848 Y. Ogihara unpublished cDNA... 70 2e-010
gb|CD454818.1|CD454818 WHE3454_A04_B08ZT CS wheat pre-anthe... 70 2e-010
gb|BQ902457.1|BQ902457 Ta02_02g09_R Ta02_AAFC_ECORC_Fusariu... 62 5e-008
gb|CD454595.1|CD454595 WHE2329_A04_A07ZT CS wheat pre-anthe... 62 5e-008
gb|CZ889985.1|CZ889985 gy41b11.x1.b.screen Bread wheat meth... 60 2e-007
gb|BJ264150.1|BJ264150 BJ264150 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BJ266186.1|BJ266186 BJ266186 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BJ266660.1|BJ266660 BJ266660 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BF483450.1|BF483450 WHE2334_A09_A18ZS Wheat pre-anthesis... 44 0.012
gb|BJ226169.1|BJ226169 BJ226169 Y. Ogihara unpublished cDNA... 44 0.012
gb|BJ231070.1|BJ231070 BJ231070 Y. Ogihara unpublished cDNA... 44 0.012
gb|CD935721.1|CD935721 OV.102E15F010202 OV Triticum aestivu... 44 0.012
gb|CD935856.1|CD935856 OV.102K13F010202 OV Triticum aestivu... 44 0.012
gb|BE404485.1|BE404485 WHE0442_H04_O08ZS Wheat etiolated se... 42 0.049
gb|BJ268062.1|BJ268062 BJ268062 Y. Ogihara unpublished cDNA... 42 0.049
gb|CA622651.1|CA622651 wl1n.pk0098.d7 wl1n Triticum aestivu... 42 0.049
gb|CA622772.1|CA622772 wl1n.pk0099.d2 wl1n Triticum aestivu... 42 0.049
gb|CD868569.1|CD868569 AZO2.109E15F001114 AZO2 Triticum aes... 42 0.049
gb|CD868596.1|CD868596 AZO2.109F15R010517 AZO2 Triticum aes... 42 0.049
gb|CD935816.1|CD935816 OV.102I15R010426 OV Triticum aestivu... 40 0.19
gb|CD935820.1|CD935820 OV.102I21R010426 OV Triticum aestivu... 40 0.19
>gb|BJ248931.1|BJ248931 BJ248931 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8k17 5', mRNA sequence
Length = 556
Score = 343 bits (173), Expect = 1e-092
Identities = 370/435 (85%), Gaps = 3/435 (0%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcag 60
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| | |||
Sbjct: 27 ggcatcagcgtgggcagcctggggcggtacaaggacgagaaggacgtggaggacatccag 86
Query: 61 gtgacggggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggac 120
||||| ||||| ||| ||| |||| ||||| || || ||||||||||||||||||
Sbjct: 87 gtgaccaactgcaccatcaagggcgccaccaacgggctccggatcaagtcgtacgaggac 146
Query: 121 tccaagtcgtcgctcaaggccagcaagttcctgtacgagggcatcaccatggacaatgtc 180
||||||||| |||||| ||||| | ||| ||||||| | | | | |||||||| |||
Sbjct: 147 tccaagtcggcgctcagggccacccgcttcgtgtacgacgacgtgaaaatggacaacgtc 206
Query: 181 tcctaccccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtcc--- 237
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 207 tcctaccccatcgtcatcgaccagaagtactgccccaacaacatctgcgccaaggccccc 266
Query: 238 ggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctccaac 297
|||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||| |
Sbjct: 267 ggcgcctccaaggtggtcgtcgccgacatcgtcttcaagaacatcgtcgggacctccgcc 326
Query: 298 acgccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgcagctc 357
||||| |||||| ||||||||||||||| ||||||| |||| ||||||||| ||||||||
Sbjct: 327 acgcccgaggccgtcacgctcaactgcgtcaacaacgtgccctgccagggcctgcagctc 386
Query: 358 gtcaacgtcgacatcaagtacaatggatccggcaacaagaccatggccgtctgcaagaat 417
||||||||| || ||||||||| || | |||||||||||||||||||||||||||
Sbjct: 387 gtcaacgtcaacctcaagtacaccggcacgaacaacaagaccatggccgtctgcaagaac 446
Query: 418 gccatcggcaagtcc 432
||| |||||| ||||
Sbjct: 447 gccgtcggcacgtcc 461
>gb|BJ246629.1|BJ246629 BJ246629 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24o17 5', mRNA sequence
Length = 656
Score = 315 bits (159), Expect = 2e-084
Identities = 362/429 (84%), Gaps = 3/429 (0%)
Strand = Plus / Plus
Query: 7 agcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcaggtgacg 66
||||| |||||||||||||| ||||||||||||||||||||||| ||| | ||||||||
Sbjct: 1 agcgtgggcagcctggggcggtacaaggacgagaaggacgtggaggacatccaggtgacc 60
Query: 67 gggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaag 126
||||| ||| ||| |||| ||||| || || ||||||||||||||||||||||||
Sbjct: 61 aactgcaccatcaagggcgccaccaacgggctccggatcaagtcgtacgaggactccaag 120
Query: 127 tcgtcgctcaaggccagcaagttcctgtacgagggcatcaccatggacaatgtctcctac 186
||| ||||| ||||| | ||| ||||||| | | | | |||||||| |||||||||
Sbjct: 121 tcggcgctccgggccacccgcttcgtgtacgacgacgtgaggatggacaacgtctcctac 180
Query: 187 cccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtcc---ggcgcc 243
|||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct: 181 cccatcgtcatcgaccagaagtactgccccaacaacatctgcgccaaggcccccggcgcc 240
Query: 244 tccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctccaacacgccg 303
|||||||||| |||| |||| ||||||||||||||||| ||| || || ||||||
Sbjct: 241 tccaaggtggtcgtcgccgacatcgtcttcaagaacatcgtcgggacgtcggcgacgccg 300
Query: 304 gaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgcagctcgtcaac 363
|||||| ||||||||||||||| ||||||| |||| ||||||||| | ||||||||||||
Sbjct: 301 gaggccgtcacgctcaactgcgtcaacaacgtgccctgccagggcctccagctcgtcaac 360
Query: 364 gtcgacatcaagtacaatggatccggcaacaagaccatggccgtctgcaagaatgccatc 423
||| || ||||||||| || || ||||||||||||||||||||||||||| ||| ||
Sbjct: 361 gtcaacctcaagtacaccggcaccaacaacaagaccatggccgtctgcaagaacgccgtc 420
Query: 424 ggcaagtcc 432
|||||||||
Sbjct: 421 ggcaagtcc 429
>gb|BJ253558.1|BJ253558 BJ253558 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2g18 3', mRNA sequence
Length = 634
Score = 315 bits (159), Expect = 2e-084
Identities = 364/432 (84%), Gaps = 3/432 (0%)
Strand = Plus / Minus
Query: 4 atcagcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcaggtg 63
|||||||| |||||||||||||| ||||||||||||||| ||||||| ||| | ||||||
Sbjct: 579 atcagcgtgggcagcctggggcggtacaaggacgagaagnacgtggaggacatccaggtg 520
Query: 64 acggggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggactcc 123
|| ||||| ||| ||| |||| ||||| || || |||||||||||||||||||||
Sbjct: 519 accaactgcaccatcaagggcgccaccaacgggctccggatcaagtcgtacgaggactcc 460
Query: 124 aagtcgtcgctcaaggccagcaagttcctgtacgagggcatcaccatggacaatgtctcc 183
|||||| ||||| ||||| | ||| ||||||| | | | | |||||||| ||||||
Sbjct: 459 aagtcggcgctccgggccacccgcttcgtgtacgacgacgtgaggatggacaacgtctcc 400
Query: 184 taccccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaag---tccggc 240
||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 399 taccccatcgtcatcgaccagaagtactgccccaacaacatctgcgccaaggcccccggc 340
Query: 241 gcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctccaacacg 300
||||||||||||| |||| |||| ||||||||||||||||| ||| || || |||
Sbjct: 339 gcctccaaggtggtcgtcgccgacatcgtcttcaagaacatcgtcgggacgtcggcgacg 280
Query: 301 ccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgcagctcgtc 360
||||||||| ||||||||||||||| ||||||| |||| ||||||||| | |||||||||
Sbjct: 279 ccggaggccgtcacgctcaactgcgtcaacaacgtgccctgccagggcctccagctcgtc 220
Query: 361 aacgtcgacatcaagtacaatggatccggcaacaagaccatggccgtctgcaagaatgcc 420
|||||| || ||||||||| || || ||||||||||||||||||||||||||| |||
Sbjct: 219 aacgtcaacctcaagtacaccggcaccaacaacaagaccatggccgtctgcaagaacgcc 160
Query: 421 atcggcaagtcc 432
|||||||||||
Sbjct: 159 gtcggcaagtcc 148
>gb|BJ252567.1|BJ252567 BJ252567 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24o17 3', mRNA sequence
Length = 612
Score = 289 bits (146), Expect = 1e-076
Identities = 343/408 (84%), Gaps = 3/408 (0%)
Strand = Plus / Minus
Query: 28 tacaaggacgagaaggacgtggaagacgtgcaggtgacggggtgcacgatcgccggcacc 87
||||||||||||||||||||||| ||| | |||||||| ||||| ||| ||| ||
Sbjct: 608 tacaaggacgagaaggacgtggaggacatccaggtgaccaactgcaccatcaagggcgcc 549
Query: 88 acgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggccagcaag 147
|| ||||| || || ||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 548 accaacgggctccggatcaagtcgtacgaggactccaagtcggcgctccgggccacccgc 489
Query: 148 ttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgaccagaag 207
||| ||||||| | | | | |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 488 ttcgtgtacgacgacgtgaggatggacaacgtctcctaccccatcgtcatcgaccagaag 429
Query: 208 tactgccccaacaacatctgcgtcaag---tccggcgcctccaaggtggccgtcaacgac 264
|||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||
Sbjct: 428 tactgccccaacaacatctgcgccaaggcccccggcgcctccaaggtggtcgtcgccgac 369
Query: 265 gtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaactgc 324
||||||||||||||||| ||| || || |||||||||||| ||||||||||||||
Sbjct: 368 atcgtcttcaagaacatcgtcgggacgtcggcgacgccggaggccgtcacgctcaactgc 309
Query: 325 gccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtacaatgga 384
| ||||||| |||| ||||||||| | ||||||||||||||| || ||||||||| ||
Sbjct: 308 gtcaacaacgtgccctgccagggcctccagctcgtcaacgtcaacctcaagtacaccggc 249
Query: 385 tccggcaacaagaccatggccgtctgcaagaatgccatcggcaagtcc 432
|| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 248 accaacaacaagaccatggccgtctgcaagaacgccgtcggcaagtcc 201
>gb|BJ251356.1|BJ251356 BJ251356 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19m10 3', mRNA sequence
Length = 531
Score = 283 bits (143), Expect = 8e-075
Identities = 286/333 (85%), Gaps = 3/333 (0%)
Strand = Plus / Minus
Query: 103 atcaagtcgtacgaggactccaagtcgtcgctcaaggccagcaagttcctgtacgagggc 162
||||||||||||||||||||||||||| |||||| ||||| | ||| ||||||| | |
Sbjct: 530 atcaagtcgtacgaggactccaagtcggcgctcagggccacccgcttcgtgtacgacgac 471
Query: 163 atcaccatggacaatgtctcctaccccatcatcatcgaccagaagtactgccccaacaac 222
| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 470 gtgaaaatggacaacgtctcctaccccatcgtcatcgaccagaagtactgccccaacaac 411
Query: 223 atctgcgtcaagtcc---ggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaac 279
||||||| |||| || |||||||||||||||| |||| |||| ||||||||||||||
Sbjct: 410 atctgcgccaaggcccccggcgcctccaaggtggtcgtcgccgacatcgtcttcaagaac 351
Query: 280 atccacggcacctccaacacgccggaggccatcacgctcaactgcgccaacaacctgcca 339
||| ||| |||||| |||||| |||||| ||||||||||||||| ||||||| ||||
Sbjct: 350 atcgtcgggacctccgccacgcccgaggccgtcacgctcaactgcgtcaacaacgtgccc 291
Query: 340 tgccagggcgtgcagctcgtcaacgtcgacatcaagtacaatggatccggcaacaagacc 399
||||||||| ||||||||||||||||| || ||||||||| || | ||||||||||
Sbjct: 290 tgccagggcctgcagctcgtcaacgtcaacctcaagtacaccggcacgaacaacaagacc 231
Query: 400 atggccgtctgcaagaatgccatcggcaagtcc 432
||||||||||||||||| ||| |||||| ||||
Sbjct: 230 atggccgtctgcaagaacgccgtcggcacgtcc 198
>gb|BJ245473.1|BJ245473 BJ245473 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19m10 5', mRNA sequence
Length = 553
Score = 274 bits (138), Expect = 7e-072
Identities = 281/328 (85%), Gaps = 3/328 (0%)
Strand = Plus / Plus
Query: 108 gtcgtacgaggactccaagtcgtcgctcaaggccagcaagttcctgtacgagggcatcac 167
|||||||||||||||||||||| |||||| ||||| | ||| ||||||| | | | |
Sbjct: 1 gtcgtacgaggactccaagtcggcgctcagggccacccgcttcgtgtacgacgacgtgaa 60
Query: 168 catggacaatgtctcctaccccatcatcatcgaccagaagtactgccccaacaacatctg 227
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 aatggacaacgtctcctaccccatcgtcatcgaccagaagtactgccccaacaacatctg 120
Query: 228 cgtcaagtcc---ggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacatcca 284
|| |||| || |||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 121 cgccaaggcccccggcgcctccaaggtggtcgtcgccgacatcgtcttcaagaacatcgt 180
Query: 285 cggcacctccaacacgccggaggccatcacgctcaactgcgccaacaacctgccatgcca 344
||| |||||| |||||| |||||| ||||||||||||||| ||||||| |||| |||||
Sbjct: 181 cgggacctccgccacgcccgaggccgtcacgctcaactgcgtcaacaacgtgccctgcca 240
Query: 345 gggcgtgcagctcgtcaacgtcgacatcaagtacaatggatccggcaacaagaccatggc 404
|||| ||||||||||||||||| || ||||||||| || | |||||||||||||||
Sbjct: 241 gggcctgcagctcgtcaacgtcaacctcaagtacaccggcacgaacaacaagaccatggc 300
Query: 405 cgtctgcaagaatgccatcggcaagtcc 432
|||||||||||| ||| |||||| ||||
Sbjct: 301 cgtctgcaagaacgccgtcggcacgtcc 328
>gb|BJ249864.1|BJ249864 BJ249864 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14b21 3', mRNA sequence
Length = 619
Score = 224 bits (113), Expect = 6e-057
Identities = 283/339 (83%), Gaps = 3/339 (0%)
Strand = Plus / Minus
Query: 28 tacaaggacgagaaggacgtggaagacgtgcaggtgacggggtgcacgatcgccggcacc 87
||||||||||||||||||||||| ||| | |||||||| ||||| ||| ||| ||
Sbjct: 615 tacaaggacgagaaggacgtggaggacatccaggtgaccaactgcaccatcaagggcgcc 556
Query: 88 acgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggccagcaag 147
|| ||||| || || ||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 555 accaacgggctccggatcaagtcgtacgaggactccaagtcggcgctccgggccacccgc 496
Query: 148 ttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgaccagaag 207
||| ||||||| | | | | |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 495 ttcgtgtacgacgacgtgaggatggacaacgtctcctaccccatcgtcatcgaccagaag 436
Query: 208 tactgccccaacaacatctgcgtcaag---tccggcgcctccaaggtggccgtcaacgac 264
|||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||
Sbjct: 435 tactgccccaacaacatctgcgccaaggcccccggcgcctccaaggtggtcgtcgccgac 376
Query: 265 gtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaactgc 324
||||||||||||||||| ||| || || |||||||||||| ||||||||||||||
Sbjct: 375 atcgtcttcaagaacatcgtcgggacgtcggcgacgccggaggccgtcacgctcaactgc 316
Query: 325 gccaacaacctgccatgccagggcgtgcagctcgtcaac 363
| ||||||| |||| ||||||||| | ||||||| ||||
Sbjct: 315 gtcaacaacgtgccctgccagggcctccagctcggcaac 277
>gb|CA741798.1|CA741798 wia1c.pk003.h2 wia1c Triticum aestivum cDNA clone wia1c.pk003.h2 5'
end, mRNA sequence
Length = 572
Score = 143 bits (72), Expect = 2e-032
Identities = 147/172 (85%)
Strand = Plus / Plus
Query: 261 cgacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaa 320
|||| ||||||||||||||||| ||| || || |||||||||||| ||||||||||
Sbjct: 173 cgacatcgtcttcaagaacatcgtcgggacgtcggcgacgccggaggccgtcacgctcaa 232
Query: 321 ctgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtacaa 380
||||| ||||||| |||| ||||||||| | ||||||||||||||| || |||||||||
Sbjct: 233 ctgcgtcaacaacgtgccctgccagggcctccagctcgtcaacgtcaacctcaagtacac 292
Query: 381 tggatccggcaacaagaccatggccgtctgcaagaatgccatcggcaagtcc 432
|| || ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 293 cggcaccaacaacaagaccatggccgtctgcaagaacgccgtcggcaagtcc 344
Score = 79.8 bits (40), Expect = 2e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 86 ccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggccagca 145
|||| ||||| || || ||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 150 ccaccaacgggctccggatcaagtcgtacgaggactccaagtcggcgctccgggccaccc 91
Query: 146 agttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgaccaga 205
||| ||||||| | | | | |||||||| ||||||||||||||| ||||||||||||
Sbjct: 90 gcttcgtgtacgacgacgtgaggatggacaacgtctcctaccccatcgtcatcgaccaga 31
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 202 cagaagtactgccccaacaacatctg 227
||||||||||||||||||||||||||
Sbjct: 9 cagaagtactgccccaacaacatctg 34
>gb|CD454470.1|CD454470 WHE2319_C03_F05ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2319_C03_F05, mRNA sequence
Length = 649
Score = 143 bits (72), Expect = 2e-032
Identities = 147/172 (85%)
Strand = Plus / Minus
Query: 261 cgacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaa 320
|||| ||||||||||||||||| ||| || || |||||||||||| ||||||||||
Sbjct: 406 cgacatcgtcttcaagaacatcgtcgggacgtcggcgacgccggaggccgtcacgctcaa 347
Query: 321 ctgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtacaa 380
||||| ||||||| |||| ||||||||| | ||||||||||||||| || |||||||||
Sbjct: 346 ctgcgtcaacaacgtgccctgccagggcctccagctcgtcaacgtcaacctcaagtacac 287
Query: 381 tggatccggcaacaagaccatggccgtctgcaagaatgccatcggcaagtcc 432
|| || ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 286 cggcaccaacaacaagaccatggccgtctgcaagaacgccgtcggcaagtcc 235
>gb|BJ249502.1|BJ249502 BJ249502 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf11d16 3', mRNA sequence
Length = 337
Score = 141 bits (71), Expect = 7e-032
Identities = 119/135 (88%)
Strand = Plus / Minus
Query: 298 acgccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgcagctc 357
|||||||||||| ||||||||||||||| ||||||| |||| ||||||||| | ||||||
Sbjct: 336 acgccggaggccgtcacgctcaactgcgtcaacaacgtgccctgccagggcctccagctc 277
Query: 358 gtcaacgtcgacatcaagtacaatggatccggcaacaagaccatggccgtctgcaagaat 417
||||||||| || ||||||||| || || |||||||||||||||||||||||||||
Sbjct: 276 gtcaacgtcaacctcaagtacaccggcaccaacaacaagaccatggccgtctgcaagaac 217
Query: 418 gccatcggcaagtcc 432
||| |||||||||||
Sbjct: 216 gccgtcggcaagtcc 202
>gb|BJ244077.1|BJ244077 BJ244077 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14b21 5', mRNA sequence
Length = 642
Score = 125 bits (63), Expect = 4e-027
Identities = 165/199 (82%)
Strand = Plus / Plus
Query: 4 atcagcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcaggtg 63
|||||||| |||||||||||||| ||||||||||||||||||||||| ||| | ||||||
Sbjct: 444 atcagcgtgggcagcctggggcggtacaaggacgagaaggacgtggaggacatccaggtg 503
Query: 64 acggggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggactcc 123
|| ||||| ||| ||| |||| ||||| || || |||||||||||||||||||||
Sbjct: 504 accaactgcaccatcaagggcgccaccaacgggctccggatcaagtcgtacgaggactcc 563
Query: 124 aagtcgtcgctcaaggccagcaagttcctgtacgagggcatcaccatggacaatgtctcc 183
|||||| ||||| ||||| | ||| ||||||| | | | | |||||||| ||||||
Sbjct: 564 aagtcggcgctccgggccacccgcttcgtgtacgacgacgtgaggatggacaacgtctcc 623
Query: 184 taccccatcatcatcgacc 202
||||||||| |||||||||
Sbjct: 624 taccccatcgtcatcgacc 642
>gb|BJ247485.1|BJ247485 BJ247485 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2g18 5', mRNA sequence
Length = 600
Score = 107 bits (54), Expect = 1e-021
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 4 atcagcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcaggtg 63
|||||||| |||||||||||||| ||||||||||||||||||||||| ||| | ||||||
Sbjct: 471 atcagcgtgggcagcctggggcggtacaaggacgagaaggacgtggaggacatccaggtg 530
Query: 64 acggggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggactcc 123
|| ||||| ||| ||| |||| ||||| || || |||||||||||||||||||||
Sbjct: 531 accaactgcaccatcaagggcgccaccaacgggctccggatcaagtcgtacgaggactcc 590
Query: 124 aagtcg 129
||||||
Sbjct: 591 aagtcg 596
>gb|BJ253848.1|BJ253848 BJ253848 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3i08 3', mRNA sequence
Length = 583
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
||||||||| |||||||||||||||||||||||||||||
Sbjct: 535 ctaccccattatcatcgaccagaagtactgccccaacaa 497
>gb|CD454818.1|CD454818 WHE3454_A04_B08ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3454_A04_B08, mRNA sequence
Length = 710
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 655 ctacccgatcatcatcgaccagaagtactgccccaacaa 617
>gb|BQ902457.1|BQ902457 Ta02_02g09_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_02g09, mRNA
sequence
Length = 276
Score = 61.9 bits (31), Expect = 5e-008
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgccatcggcaagtcc 432
||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 263 caacaagaccatggccgtctgcaagaacgccgtcggcacgtcc 221
>gb|CD454595.1|CD454595 WHE2329_A04_A07ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2329_A04_A07, mRNA sequence
Length = 619
Score = 61.9 bits (31), Expect = 5e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccc 215
|||||||||||||||||||||||||||||||
Sbjct: 496 accccatcatcatcgaccagaagtactgccc 466
>gb|CZ889985.1|CZ889985 gy41b11.x1.b.screen Bread wheat methylation unfiltered library
(Bread_Wheat_U) Triticum aestivum genomic, DNA sequence
Length = 225
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 186 ccccatcatcatcgaccagaagtactgccc 215
||||||||||||||||||||||||||||||
Sbjct: 114 ccccatcatcatcgaccagaagtactgccc 143
>gb|BJ264150.1|BJ264150 BJ264150 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh12d18 3', mRNA sequence
Length = 686
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 186 ccccatcatcatcgaccagaagtactgccc 215
||||||||||||||||||||||||||||||
Sbjct: 412 ccccatcatcatcgaccagaagtactgccc 383
>gb|BJ266186.1|BJ266186 BJ266186 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25d18 3', mRNA sequence
Length = 557
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 186 ccccatcatcatcgaccagaagtactgccc 215
||||||||||||||||||||||||||||||
Sbjct: 285 ccccatcatcatcgaccagaagtactgccc 256
>gb|BJ266660.1|BJ266660 BJ266660 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh27l09 3', mRNA sequence
Length = 677
Score = 60.0 bits (30), Expect = 2e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 186 ccccatcatcatcgaccagaagtactgccc 215
||||||||||||||||||||||||||||||
Sbjct: 410 ccccatcatcatcgaccagaagtactgccc 381
>gb|BF483450.1|BF483450 WHE2334_A09_A18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2334_A09_A18, mRNA sequence
Length = 488
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcg 26
||||||||| ||||||||||||||||
Sbjct: 279 ggcatcagcatcggcagcctggggcg 304
>gb|BJ226169.1|BJ226169 BJ226169 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25f11 5', mRNA sequence
Length = 579
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcc 214
|||||||||||||||||||| | |||||||
Sbjct: 66 accccatcatcatcgaccagtactactgcc 95
>gb|BJ231070.1|BJ231070 BJ231070 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25f11 3', mRNA sequence
Length = 551
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgcc 214
|||||||||||||||||||| | |||||||
Sbjct: 486 accccatcatcatcgaccagtactactgcc 457
>gb|CD935721.1|CD935721 OV.102E15F010202 OV Triticum aestivum cDNA clone OV102E15, mRNA
sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcg 26
||||||||| ||||||||||||||||
Sbjct: 147 ggcatcagcatcggcagcctggggcg 172
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 325 accccatcatcatcgaccag 344
>gb|CD935856.1|CD935856 OV.102K13F010202 OV Triticum aestivum cDNA clone OV102K13, mRNA
sequence
Length = 695
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcg 26
||||||||| ||||||||||||||||
Sbjct: 147 ggcatcagcatcggcagcctggggcg 172
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 325 accccatcatcatcgaccag 344
>gb|BE404485.1|BE404485 WHE0442_H04_O08ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0442_H04_O08, mRNA
sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.049
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgc 213
|||||||||||||||||||| | ||||||
Sbjct: 443 accccatcatcatcgaccagtactactgc 471
>gb|BJ268062.1|BJ268062 BJ268062 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh14n07 5', mRNA sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 505 tgcccgtgcgttgacacggaa 525
|||||||||||||||||||||
Sbjct: 320 tgcccgtgcgttgacacggaa 300
>gb|CA622651.1|CA622651 wl1n.pk0098.d7 wl1n Triticum aestivum cDNA clone wl1n.pk0098.d7 5'
end, mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.049
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgc 213
|||||||||||||||||||| | ||||||
Sbjct: 2 accccatcatcatcgaccagtactactgc 30
>gb|CA622772.1|CA622772 wl1n.pk0099.d2 wl1n Triticum aestivum cDNA clone wl1n.pk0099.d2 5'
end, mRNA sequence
Length = 436
Score = 42.1 bits (21), Expect = 0.049
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgc 213
|||||||||||||||||||| | ||||||
Sbjct: 2 accccatcatcatcgaccagtactactgc 30
>gb|CD868569.1|CD868569 AZO2.109E15F001114 AZO2 Triticum aestivum cDNA clone AZO2109E15,
mRNA sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.049
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgc 213
|||||||||||||||||||| | ||||||
Sbjct: 271 accccatcatcatcgaccagtactactgc 299
>gb|CD868596.1|CD868596 AZO2.109F15R010517 AZO2 Triticum aestivum cDNA clone AZO2109F15,
mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.049
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgc 213
|||||||||||||||||||| | ||||||
Sbjct: 464 accccatcatcatcgaccagtactactgc 436
>gb|CD935816.1|CD935816 OV.102I15R010426 OV Triticum aestivum cDNA clone OV102I15, mRNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 548 accccatcatcatcgaccag 529
>gb|CD935820.1|CD935820 OV.102I21R010426 OV Triticum aestivum cDNA clone OV102I21, mRNA
sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 548 accccatcatcatcgaccag 529
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 168,465
Number of Sequences: 636343
Number of extensions: 168465
Number of successful extensions: 50424
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50339
Number of HSP's gapped (non-prelim): 72
length of query: 682
length of database: 367,240,239
effective HSP length: 19
effective length of query: 663
effective length of database: 355,149,722
effective search space: 235464265686
effective search space used: 235464265686
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)