BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG605173.1|BG605173 WHE2328_D05_H10ZS Wheat pre-anthesis... 186 3e-045
gb|BF484308.1|BF484308 WHE2321_G07_M13ZS Wheat pre-anthesis... 96 7e-018
gb|BJ253366.1|BJ253366 BJ253366 Y. Ogihara unpublished cDNA... 94 3e-017
gb|CD900236.1|CD900236 G174.114O14R011120 G174 Triticum aes... 48 0.002
gb|BJ247311.1|BJ247311 BJ247311 Y. Ogihara unpublished cDNA... 46 0.006
gb|CA741406.1|CA741406 wia1c.pk002.d19 wia1c Triticum aesti... 42 0.096
gb|CD900235.1|CD900235 G174.114O14F010824 G174 Triticum aes... 42 0.096
gb|BQ246752.1|BQ246752 TaE15006A03R TaE15 Triticum aestivum... 40 0.38
gb|CA728456.1|CA728456 wdi1c.pk004.m18 wdi1c Triticum aesti... 40 0.38
gb|CD880717.1|CD880717 F1.075K16F010126 F1 Triticum aestivu... 40 0.38
gb|CD898187.1|CD898187 G174.108F23F010821 G174 Triticum aes... 40 0.38
gb|CD898188.1|CD898188 G174.108F23R011121 G174 Triticum aes... 40 0.38
gb|CK161607.1|CK161607 FGAS014178 Triticum aestivum FGAS: L... 40 0.38
gb|CK165958.1|CK165958 FGAS049998 Triticum aestivum FGAS: T... 40 0.38
>gb|BG605173.1|BG605173 WHE2328_D05_H10ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2328_D05_H10, mRNA sequence
Length = 414
Score = 186 bits (94), Expect = 3e-045
Identities = 205/242 (84%)
Strand = Plus / Plus
Query: 632 tctacaactgcaccatcgacggcggacaggacacgctgtacgaccacaagggcctgcact 691
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 5 tctacaactgcaccatcgacggcgggcaggacacgctgtacgaccacaaggggctgcact 64
Query: 692 acttcaagggctgcctcatccggggcagcgtcgacttcatcttcggcttcggccgcagct 751
||||||||| |||| | ||| || ||||| |||||||||||||| || || | ||
Sbjct: 65 acttcaaggactgcgtgatcaaagggagcgtggacttcatcttcgggtttgggaggtcct 124
Query: 752 tctacgaggactgccgcatcgagtcggtggtcaaggaggtggcggtgctgacggcgcagc 811
| |||||| |||||||||||| ||| | || |||||| | || || || ||||||||||
Sbjct: 125 tgtacgagaactgccgcatcgtgtccatcgtgaaggagatcgccgttctcacggcgcagc 184
Query: 812 agcgttccaagtccatcgagggcgccatcgacaccggcttctcgttcaagaactgcagca 871
|||| ||||| ||||||||||||| ||||| | ||| ||||| ||||||||||||||||
Sbjct: 185 agcggaccaagaccatcgagggcgctatcgagagcgggttctcattcaagaactgcagca 244
Query: 872 tc 873
||
Sbjct: 245 tc 246
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1001 agccggagagcagcggcatctactacggcgagttcaa 1037
|||| ||||| ||||| ||||||||||||||||||||
Sbjct: 374 agcctgagagtagcgggatctactacggcgagttcaa 410
>gb|BF484308.1|BF484308 WHE2321_G07_M13ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2321_G07_M13, mRNA sequence
Length = 355
Score = 95.6 bits (48), Expect = 7e-018
Identities = 106/123 (86%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 469 gacggtaagccggtgggcacggtggggagcgccacgctg-gcggtggagtcggactactt 527
||||| |||||||||||||||||||||||| |||| ||| || | ||||| ||||||||
Sbjct: 233 gacgggaagccggtgggcacggtggggagcaccac-ctgcgccatcgagtccgactactt 291
Query: 528 cacggcgtacggcgtggtgttccggaacgacgcgccgctggccaagcccggcgccaaggg 587
| ||||| |||||| |||||| |||||||||||| ||||||||||| || ||||||||
Sbjct: 292 cgtggcgtncggcgtcgtgttcaagaacgacgcgccactggccaagccgggggccaaggg 351
Query: 588 cgg 590
|||
Sbjct: 352 cgg 354
>gb|BJ253366.1|BJ253366 BJ253366 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf28i24 3', mRNA sequence
Length = 581
Score = 93.7 bits (47), Expect = 3e-017
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 1071 gaagagggtggggtgggcgctggacctcaccgaggcgcaggccaagccattcgtcggcac 1130
||||||||| |||||||| |||| ||||||||||| ||||||||||| ||| |||||||
Sbjct: 459 gaagagggtcgggtgggctgtggatctcaccgaggcccaggccaagcccttcatcggcac 400
Query: 1131 acactacgtcctcggcgacacgtggatccagccaccgcc 1169
||||||| || |||||||| | ||||| | |||||||||
Sbjct: 399 acactacatcttcggcgactcttggattctgccaccgcc 361
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1001 agccggagagcagcggcatctactacggcgagttcaa 1037
|||| ||||| ||||| ||||||||||||||||||||
Sbjct: 523 agcctgagagtagcgggatctactacggcgagttcaa 487
>gb|CD900236.1|CD900236 G174.114O14R011120 G174 Triticum aestivum cDNA clone G174114O14,
mRNA sequence
Length = 625
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 714 gggcagcgtcgacttcatcttcggcttcggccgcagcttctacgaggactgc 765
|||| ||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 561 gggcggcgtcgacttcatcttcggctacggccagtccatctacgaggactgc 510
>gb|BJ247311.1|BJ247311 BJ247311 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf28i24 5', mRNA sequence
Length = 521
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 469 gacggtaagccggtgggcacggtggggagcgccac 503
||||| ||||| |||||||||||||||||| ||||
Sbjct: 454 gacgggaagcccgtgggcacggtggggagcaccac 488
>gb|CA741406.1|CA741406 wia1c.pk002.d19 wia1c Triticum aestivum cDNA clone
wia1c.pk002.d19 5' end, mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ccctcctcctcctcgccctgg 67
|||||||||||||||||||||
Sbjct: 18 ccctcctcctcctcgccctgg 38
>gb|CD900235.1|CD900235 G174.114O14F010824 G174 Triticum aestivum cDNA clone G174114O14,
mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.096
Identities = 71/88 (80%)
Strand = Plus / Plus
Query: 658 caggacacgctgtacgaccacaagggcctgcactacttcaagggctgcctcatccggggc 717
||||||||||| | ||||| || ||||| | |||||||| ||||| || || ||||
Sbjct: 583 caggacacgctctgcgacctcatgggccggnactacttccgccgctgcgtcgtcgagggc 642
Query: 718 agcgtcgacttcatcttcggcttcggcc 745
||||||| ||||||||||||| |||||
Sbjct: 643 ggcgtcgaattcatcttcggctacggcc 670
>gb|BQ246752.1|BQ246752 TaE15006A03R TaE15 Triticum aestivum cDNA clone TaE15006A03R, mRNA
sequence
Length = 264
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 gcccctcctcctcctcgccc 64
||||||||||||||||||||
Sbjct: 150 gcccctcctcctcctcgccc 131
>gb|CA728456.1|CA728456 wdi1c.pk004.m18 wdi1c Triticum aestivum cDNA clone wdi1c.pk004.m18
5' end, mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 722 tcgacttcatcttcggcttcggccgcagcttctacgaggactgc 765
||||||||||||||||| ||||||| | ||||| ||||||||
Sbjct: 355 tcgacttcatcttcggcaacggccgctccctctacaaggactgc 398
>gb|CD880717.1|CD880717 F1.075K16F010126 F1 Triticum aestivum cDNA clone F1075K16, mRNA
sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 gcccctcctcctcctcgccc 64
||||||||||||||||||||
Sbjct: 543 gcccctcctcctcctcgccc 524
>gb|CD898187.1|CD898187 G174.108F23F010821 G174 Triticum aestivum cDNA clone G174108F23,
mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 gcccctcctcctcctcgccc 64
||||||||||||||||||||
Sbjct: 526 gcccctcctcctcctcgccc 507
>gb|CD898188.1|CD898188 G174.108F23R011121 G174 Triticum aestivum cDNA clone G174108F23,
mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 gcccctcctcctcctcgccc 64
||||||||||||||||||||
Sbjct: 539 gcccctcctcctcctcgccc 558
>gb|CK161607.1|CK161607 FGAS014178 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1099
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 gcccctcctcctcctcgccc 64
||||||||||||||||||||
Sbjct: 564 gcccctcctcctcctcgccc 545
>gb|CK165958.1|CK165958 FGAS049998 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1147
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 218 cggaggcggagaagaagaag 237
||||||||||||||||||||
Sbjct: 601 cggaggcggagaagaagaag 582
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 497,778
Number of Sequences: 636343
Number of extensions: 497778
Number of successful extensions: 169387
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 169356
Number of HSP's gapped (non-prelim): 29
length of query: 1310
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1290
effective length of database: 354,513,379
effective search space: 457322258910
effective search space used: 457322258910
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)