BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115079.2.1
(636 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK205437.1|CK205437 FGAS016922 Triticum aestivum FGAS: L... 392 e-107
gb|BJ216979.1|BJ216979 BJ216979 Y. Ogihara unpublished cDNA... 385 e-105
gb|CK205864.1|CK205864 FGAS017413 Triticum aestivum FGAS: L... 385 e-105
gb|BJ216653.1|BJ216653 BJ216653 Y. Ogihara unpublished cDNA... 333 9e-090
gb|BJ209232.1|BJ209232 BJ209232 Y. Ogihara unpublished cDNA... 323 8e-087
gb|BF484118.1|BF484118 WHE1788_E07_I14ZS Wheat pre-anthesis... 309 1e-082
gb|CA593831.1|CA593831 wpa1c.pk002.g12 wpa1c Triticum aesti... 60 2e-007
gb|DR736356.1|DR736356 FGAS081726 Triticum aestivum FGAS: L... 48 7e-004
>gb|CK205437.1|CK205437 FGAS016922 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1063
Score = 392 bits (198), Expect = e-107
Identities = 297/330 (90%)
Strand = Plus / Plus
Query: 307 cgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccactct 366
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cgaactagcattccttcaaatgtgatgcctgggccaaaagccaagatcaatccccactct 342
Query: 367 tcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagattgta 426
|| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||
Sbjct: 343 tcccttattgcccctttcttcaactcatccctcaaatactccagcacatagaagactgtg 402
Query: 427 ttgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctctggc 486
|||||||||||||| ||||||||||| | ||| ||||| || |||||||| || ||||||
Sbjct: 403 ttgctgctcacattcccatagttcatcagggcctttctactgatcttgagtttatctggc 462
Query: 487 tgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcacagcc 546
| ||||| ||| || | ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 463 tcaagttcaagacaaacctccagcctgttcaatattgctggtccaccgggatgcacagcc 522
Query: 547 caaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaacct 606
||||||| ||| ||||| ||||||||||| |||| || |||||| |||||||||| |||
Sbjct: 523 caaaatacatcattgaactcctttatcccaaccttgtccatgagtatcctgcagaagcct 582
Query: 607 tctatgcggctttcaatcttctcaggcaaa 636
|||||||||||||||||||| |||||||||
Sbjct: 583 tctatgcggctttcaatcttttcaggcaaa 612
>gb|BJ216979.1|BJ216979 BJ216979 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh14j12 3', mRNA sequence
Length = 642
Score = 385 bits (194), Expect = e-105
Identities = 296/330 (89%)
Strand = Plus / Plus
Query: 307 cgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccactct 366
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cgaactagcagtccttcaaatgtgatgcctgggccaaaagccaagatcaatccccactct 276
Query: 367 tcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagattgta 426
|| ||||||||||||||||| || || |||||||| ||||||||||||||||||| |||
Sbjct: 277 tcccttattgcccctttcttcaattcatccctcaaatactccagcacatagaagactgtg 336
Query: 427 ttgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctctggc 486
|| ||||||||||| ||||||||||| | ||| ||||| || |||||||| || ||||||
Sbjct: 337 ttactgctcacattcccatagttcatcagggcctttctactgatcttgagtttatctggc 396
Query: 487 tgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcacagcc 546
| ||||| ||| || | ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 397 tcaagttgaagacaaacctccagcctgttcaatattgctggtccaccgggatgcacagcc 456
Query: 547 caaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaacct 606
||||||| ||| ||||| ||||||||||| |||| || |||||| |||||||||| |||
Sbjct: 457 caaaatacatcattgaactcctttatcccaaccttgtccatgagtatcctgcagaagcct 516
Query: 607 tctatgcggctttcaatcttctcaggcaaa 636
|||||||||||||||||||| |||||||||
Sbjct: 517 tctatgcggctttcaatcttttcaggcaaa 546
>gb|CK205864.1|CK205864 FGAS017413 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1077
Score = 385 bits (194), Expect = e-105
Identities = 296/330 (89%)
Strand = Plus / Plus
Query: 307 cgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccactct 366
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cgaactagcagtccttcaaatgtgatgcctgggccaaaagccaagatcaatccccactct 344
Query: 367 tcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagattgta 426
|| ||||||||||||||||| || || |||||||| ||||||||||||||||||| |||
Sbjct: 345 tcccttattgcccctttcttcaattcatccctcaaatactccagcacatagaagactgtg 404
Query: 427 ttgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctctggc 486
|| ||||||||||| ||||||||||| | ||| ||||| || |||||||| || ||||||
Sbjct: 405 ttactgctcacattcccatagttcatcagggcctttctactgatcttgagtttatctggc 464
Query: 487 tgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcacagcc 546
| ||||| ||| || | ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 465 tcaagttgaagacaaacctccagcctgttcaatattgctggtccaccgggatgcacagcc 524
Query: 547 caaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaacct 606
||||||| ||| ||||| ||||||||||| |||| || |||||| |||||||||| |||
Sbjct: 525 caaaatacatcattgaactcctttatcccaaccttgtccatgagtatcctgcagaagcct 584
Query: 607 tctatgcggctttcaatcttctcaggcaaa 636
|||||||||||||||||||| |||||||||
Sbjct: 585 tctatgcggctttcaatcttttcaggcaaa 614
>gb|BJ216653.1|BJ216653 BJ216653 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh13d20 3', mRNA sequence
Length = 543
Score = 333 bits (168), Expect = 9e-090
Identities = 264/296 (89%)
Strand = Plus / Plus
Query: 307 cgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccactct 366
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cgaactagcagtccttcaaatgtgatgcctgggccaaaagccaagatcaatccccactct 304
Query: 367 tcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagattgta 426
|| ||||||||||||||||| || || |||||||| ||||||||||||||||||| |||
Sbjct: 305 tcccttattgcccctttcttcaattcatccctcaaatactccagcacatagaagactgtg 364
Query: 427 ttgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctctggc 486
|| ||||||||||| ||||||||||| | ||| ||||| || |||||||| || ||||||
Sbjct: 365 ttactgctcacattcccatagttcatcagggcctttctactgatcttgagtttatctggc 424
Query: 487 tgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcacagcc 546
| ||||| ||| || | ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 425 tcaagttgaagacaaacctccagcctgttcaatattgctggtccaccgggatgcacagcc 484
Query: 547 caaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaa 602
||||||| ||| ||||| ||||||||||| |||| || |||||| ||||||||||
Sbjct: 485 caaaatacatcattgaactcctttatcccaaccttgtccatgagtatcctgcagaa 540
>gb|BJ209232.1|BJ209232 BJ209232 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh13d20 5', mRNA sequence
Length = 548
Score = 323 bits (163), Expect = 8e-087
Identities = 262/295 (88%)
Strand = Plus / Minus
Query: 342 aaaagccaagatcaatccccactcttcacttattgcccctttctttaactcgtccctcaa 401
||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct: 548 aaaagccaagatcaatccccactcttcccttattgcccctttcttcaattcatccctcaa 489
Query: 402 gtactccagcacatagaagattgtattgctgctcacatttccatagttcattaaggcttt 461
||||||||||||||||||| ||| || ||||||||||| ||||||||||| | ||| ||
Sbjct: 488 atactccagcacatagaagactgtgttactgctcacattcccatagttcatcagggcctt 429
Query: 462 tctgctaatcttgagcttctctggctgaagtttaaggcagaactcaagcctgttcaatat 521
||| || |||||||| || ||||||| ||||| ||| || | ||| ||||||||||||||
Sbjct: 428 tctactgatcttgagtttatctggctcaagttgaagacaaacctccagcctgttcaatat 369
Query: 522 tgctggtccaccaggatgcacagcccaaaatatatcgttgaaatcctttatccctacctg 581
|||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||| ||||
Sbjct: 368 tgctggtccaccgggatgcacagcccaaaatacatcattgaactcctttatcccaacctt 309
Query: 582 gttcatgagagtcctgcagaaaccttctatgcggctttcaatcttctcaggcaaa 636
|| |||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 308 gtccatgagtatcctgcagaagccttctatgcggctttcaatcttttcaggcaaa 254
>gb|BF484118.1|BF484118 WHE1788_E07_I14ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1788_E07_I14, mRNA sequence
Length = 677
Score = 309 bits (156), Expect = 1e-082
Identities = 264/300 (88%)
Strand = Plus / Minus
Query: 337 gggccaaaagccaagatcaatccccactcttcacttattgcccctttctttaactcgtcc 396
||||||||||| | |||||||||||||||||| ||||||||||||||||| || || |||
Sbjct: 677 gggccaaaagcaaggatcaatccccactcttcccttattgcccctttcttcaattcatcc 618
Query: 397 ctcaagtactccagcacatagaagattgtattgctgctcacatttccatagttcattaag 456
||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||| | |
Sbjct: 617 ctcaaatactccagcacatagaagactgtgttgctgctcacattcccatagttcatcagg 558
Query: 457 gcttttctgctaatcttgagcttctctggctgaagtttaaggcagaactcaagcctgttc 516
|| ||||| || |||||||| || ||||||| ||||| ||| || | ||| |||||||||
Sbjct: 557 gcctttctactgatcttgagtttatctggctcaagttcaagacaaacctccagcctgttc 498
Query: 517 aatattgctggtccaccaggatgcacagcccaaaatatatcgttgaaatcctttatccct 576
|||||||||||||| || ||||||||||||||||||| || ||||| |||||||||||
Sbjct: 497 aatattgctggtccgccgggatgcacagcccaaaatacgtcattgaactcctttatccca 438
Query: 577 acctggttcatgagagtcctgcagaaaccttctatgcggctttcaatcttctcaggcaaa 636
|||| || |||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 437 accttgtccatgagtatcctgcagaagccttctatgcggctttcaatcttttcaggcaaa 378
>gb|CA593831.1|CA593831 wpa1c.pk002.g12 wpa1c Triticum aestivum cDNA clone wpa1c.pk002.g12
5' end, mRNA sequence
Length = 532
Score = 60.0 bits (30), Expect = 2e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 596 tgcagaaaccttctatgcggctttcaatcttctcaggcaaa 636
||||||| |||| |||||||||||||||||| |||||||||
Sbjct: 387 tgcagaagccttntatgcggctttcaatcttttcaggcaaa 347
>gb|DR736356.1|DR736356 FGAS081726 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1112
Score = 48.1 bits (24), Expect = 7e-004
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 593 tcctgcagaaaccttctatgcggctttcaatcttctcaggcaaa 636
|||||||| | |||| |||||||||||||||||| |||||||||
Sbjct: 953 tcctgcaggacccttttatgcggctttcaatctt-tcaggcaaa 911
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,302
Number of Sequences: 636343
Number of extensions: 100302
Number of successful extensions: 27973
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27963
Number of HSP's gapped (non-prelim): 10
length of query: 636
length of database: 367,240,239
effective HSP length: 19
effective length of query: 617
effective length of database: 355,149,722
effective search space: 219127378474
effective search space used: 219127378474
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)