BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ901513.1|BQ901513 Ta02_16e04_R Ta02_AAFC_ECORC_Fusariu... 242 3e-062
gb|DQ157841.1| Triticum turgidum strain Langdon chromosome ... 170 9e-041
gb|BE404600.1|BE404600 WHE0445_B11_C21ZS Wheat etiolated se... 135 5e-030
>gb|BQ901513.1|BQ901513 Ta02_16e04_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_16e04, mRNA
sequence
Length = 461
Score = 242 bits (122), Expect = 3e-062
Identities = 161/174 (92%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
|||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct: 288 aggctgcagtgctgcactatacatacaccaaattttcagacttaacatccagacgtgatc 347
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
|||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 348 gctgtggatgcaagcccacgaaggaagatgttaaaagatgtttcatgttggattttgaca 407
Query: 121 gagcagcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggt 174
||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 408 gagcagcttttataattgcatcaactgctagtgaagaggatatgcttcgctggt 461
>gb|DQ157841.1| Triticum turgidum strain Langdon chromosome 1 clone BAC 1219A5 map 1BS,
WORKING DRAFT SEQUENCE, 16 unordered pieces
Length = 105039
Score = 170 bits (86), Expect = 9e-041
Identities = 116/126 (92%)
Strand = Plus / Minus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
|||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct: 49201 aggctgcagttctgcactatacatacaccaaattttcagacttaacatccagacgtgatc 49142
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
|||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 49141 gctgtggatgcaagcccacgaaggaagatgttaaaagatgtttcatgttggattttgaca 49082
Query: 121 gagcag 126
||||||
Sbjct: 49081 gagcag 49076
Score = 75.8 bits (38), Expect = 4e-012
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 126 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
|||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 48880 gcttttataattgcatcaacagctagtgaagaggatatgcttcgctggta 48831
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
||||||| || || |||||||||| |||||||||||| ||| ||||||||||||| ||||
Sbjct: 48608 ggtacaacgagcgcgtcgtgtggaacgataagcagctcaacctaaagcttctgagaaaag 48549
Query: 232 gagt 235
||||
Sbjct: 48548 gagt 48545
>gb|BE404600.1|BE404600 WHE0445_B11_C21ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0445_B11_C21, mRNA
sequence
Length = 522
Score = 135 bits (68), Expect = 5e-030
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
|||||||||||||||| ||||||||||| |||| |||||| || ||||||||||||||||
Sbjct: 436 aggctgcagttctgcactatacatacaccaaatnttcagacttaacatctagacgtgatc 495
Query: 61 gctgtggatgcaagcctacaaaagaag 87
|||||||||||||||||||||||||||
Sbjct: 496 gctgtggatgcaagcctacaaaagaag 522
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,079
Number of Sequences: 636343
Number of extensions: 135079
Number of successful extensions: 35605
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35588
Number of HSP's gapped (non-prelim): 17
length of query: 788
length of database: 367,240,239
effective HSP length: 19
effective length of query: 769
effective length of database: 355,149,722
effective search space: 273110136218
effective search space used: 273110136218
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)