BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3089980.2.1
         (540 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA594231.1|CA594231  wpa1c.pk004.p9 wpa1c Triticum aestiv...    40   0.15 
gb|CF134207.1|CF134207  WHE4369_B07_D13ZT Wheat meiotic flor...    40   0.15 

>gb|CA594231.1|CA594231 wpa1c.pk004.p9 wpa1c Triticum aestivum cDNA clone wpa1c.pk004.p9 5'
           end, mRNA sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 0.15
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 198 ggcctcgacgccgccggcctcggc 221
           |||||||||||||||| |||||||
Sbjct: 182 ggcctcgacgccgccgacctcggc 205



>gb|CF134207.1|CF134207 WHE4369_B07_D13ZT Wheat meiotic floret cDNA library Triticum
           aestivum cDNA clone WHE4369_B07_D13, mRNA sequence
          Length = 656

 Score = 40.1 bits (20), Expect = 0.15
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 gacgccggcgacgacggtgg 259
           ||||||||||||||||||||
Sbjct: 564 gacgccggcgacgacggtgg 545



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 191,578
Number of Sequences: 636343
Number of extensions: 191578
Number of successful extensions: 56933
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56930
Number of HSP's gapped (non-prelim): 3
length of query: 540
length of database: 367,240,239
effective HSP length: 19
effective length of query: 521
effective length of database: 355,149,722
effective search space: 185033005162
effective search space used: 185033005162
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)