BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071418.2.1
(1432 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ279395.1|BJ279395 BJ279395 Y. Ogihara unpublished cDNA... 64 3e-008
gb|BQ578376.1|BQ578376 WHE0302_B09_C18ZS Wheat unstressed s... 64 3e-008
gb|BE414761.1|BE414761 MWL002.C06F990504 ITEC MWL Wheat Roo... 58 2e-006
gb|BE430047.1|BE430047 TAS006.E04R990622 ITEC TAS Wheat cDN... 58 2e-006
gb|BE517070.1|BE517070 WHE623_B09_D17ZA Wheat ABA-treated e... 58 2e-006
gb|BM137250.1|BM137250 WHE2631_D12_H23ZS Wheat Fusarium gra... 58 2e-006
gb|AL825266.1|AL825266 AL825266 p:335 Triticum aestivum cDN... 58 2e-006
gb|BQ744370.1|BQ744370 WHE4114_G10_M20ZS Wheat salt-stresse... 58 2e-006
gb|BJ319379.1|BJ319379 BJ319379 Y. Ogihara unpublished cDNA... 58 2e-006
gb|CA650026.1|CA650026 wre1n.pk0148.b1 wre1n Triticum aesti... 58 2e-006
gb|AJ611580.1|AJ611580 AJ611580 Triticum turgidum subsp. du... 58 2e-006
gb|BE490233.1|BE490233 WHE0366_H10_P20ZS Wheat cold-stresse... 56 7e-006
gb|AL822821.1|AL822821 AL822821 p:335 Triticum aestivum cDN... 56 7e-006
gb|BE406921.1|BE406921 WHE0433_g09_m17zS Wheat etiolated se... 54 3e-005
gb|BQ161211.1|BQ161211 WHE0366_H10_P20ZT Wheat cold-stresse... 54 3e-005
gb|CD866826.1|CD866826 AZO2.104I16R010327 AZO2 Triticum aes... 54 3e-005
gb|CK201053.1|CK201053 FGAS009572 Triticum aestivum FGAS: L... 54 3e-005
gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase ... 54 3e-005
gb|BQ839184.1|BQ839184 WHE4163_C09_E17ZS Wheat CS whole pla... 52 1e-004
gb|BQ578344.1|BQ578344 WHE0301_G12_M23ZS Wheat unstressed s... 50 4e-004
gb|BJ315162.1|BJ315162 BJ315162 Y. Ogihara unpublished cDNA... 50 4e-004
gb|BU100113.1|BU100113 WHE3315_C12_F23ZS Chinese Spring whe... 48 0.002
gb|CA691512.1|CA691512 wlm96.pk053.j18 wlm96 Triticum aesti... 48 0.002
gb|CK162825.1|CK162825 FGAS015425 Triticum aestivum FGAS: L... 48 0.002
gb|CK206856.1|CK206856 FGAS018467 Triticum aestivum FGAS: L... 48 0.002
gb|CK213084.1|CK213084 FGAS024986 Triticum aestivum FGAS: L... 48 0.002
gb|BE406468.1|BE406468 WHE0416_g08_n16zB Wheat etiolated se... 46 0.007
gb|BE414993.1|BE414993 MWL010.A06F990625 ITEC MWL Wheat Roo... 46 0.007
gb|BJ295598.1|BJ295598 BJ295598 Y. Ogihara unpublished cDNA... 46 0.007
gb|BQ162433.1|BQ162433 WHE0416_g08_n16zT Wheat etiolated se... 46 0.007
gb|CD905025.1|CD905025 G468.100F10F010614 G468 Triticum aes... 46 0.007
gb|CB307508.1|CB307508 HFIG493 Hessian fly infested cDNA li... 46 0.007
gb|CK204735.1|CK204735 FGAS013271 Triticum aestivum FGAS: L... 46 0.007
gb|CK205087.1|CK205087 FGAS013624 Triticum aestivum FGAS: L... 46 0.007
gb|CK208098.1|CK208098 FGAS019779 Triticum aestivum FGAS: L... 46 0.007
gb|BE426259.1|BE426259 WHE0330_H03_O06ZS Wheat unstressed s... 44 0.026
gb|BE426581.1|BE426581 WHE0336_G08_N16ZS Wheat unstressed s... 44 0.026
gb|BE426668.1|BE426668 WHE0331_G06_N11ZS Wheat unstressed s... 44 0.026
gb|BM135072.1|BM135072 WHE0459_E12_E12ZS Wheat Fusarium gra... 44 0.026
gb|BJ225137.1|BJ225137 BJ225137 Y. Ogihara unpublished cDNA... 44 0.026
gb|BJ314315.1|BJ314315 BJ314315 Y. Ogihara unpublished cDNA... 44 0.026
gb|BJ316153.1|BJ316153 BJ316153 Y. Ogihara unpublished cDNA... 44 0.026
gb|CA734489.1|CA734489 wpi1s.pk001.e17 wpi1s Triticum aesti... 44 0.026
gb|CK207407.1|CK207407 FGAS019028 Triticum aestivum FGAS: L... 44 0.026
gb|CK210555.1|CK210555 FGAS022376 Triticum aestivum FGAS: L... 44 0.026
gb|CK210829.1|CK210829 FGAS022656 Triticum aestivum FGAS: L... 44 0.026
gb|CK217630.1|CK217630 FGAS029632 Triticum aestivum FGAS: L... 44 0.026
gb|AJ612029.1|AJ612029 AJ612029 Triticum turgidum subsp. du... 44 0.026
gb|CV763133.1|CV763133 FGAS057522 Triticum aestivum FGAS: L... 44 0.026
gb|CV767720.1|CV767720 FGAS062111 Triticum aestivum FGAS: L... 44 0.026
gb|BG909693.1|BG909693 TaLr1107E06R TaLr1 Triticum aestivum... 42 0.10
gb|BQ483298.1|BQ483298 WHE3506_H04_O08ZS Wheat unstressed r... 42 0.10
gb|AL825088.1|AL825088 AL825088 p:234 Triticum aestivum cDN... 42 0.10
gb|CA689204.1|CA689204 wlm96.pk044.n2 wlm96 Triticum aestiv... 42 0.10
gb|CA728846.1|CA728846 wdi1c.pk005.b17 wdi1c Triticum aesti... 42 0.10
gb|CD873902.1|CD873902 AZO3.100P05F010925 AZO3 Triticum aes... 42 0.10
gb|BE401844.1|BE401844 CSB001G06F990908 ITEC CSB Wheat Endo... 40 0.41
gb|BE404218.1|BE404218 WHE1203_F02_L03ZS Wheat etiolated se... 40 0.41
gb|BE490402.1|BE490402 WHE0367_H01_O01ZS Wheat cold-stresse... 40 0.41
gb|BE500751.1|BE500751 WHE0991-0994_A07_A07ZS Wheat pre-ant... 40 0.41
gb|BE585704.1|BE585704 EST2-3_H02_2C4t7_016 KSU wheat Fusar... 40 0.41
gb|BF482446.1|BF482446 WHE1796_G02_M04ZS Wheat pre-anthesis... 40 0.41
gb|BM138154.1|BM138154 WHE0487_A01_A01ZS Wheat Fusarium gra... 40 0.41
gb|BJ245629.1|BJ245629 BJ245629 Y. Ogihara unpublished cDNA... 40 0.41
gb|BJ284394.1|BJ284394 BJ284394 Y. Ogihara unpublished cDNA... 40 0.41
gb|BQ607382.1|BQ607382 BRY_3276 wheat EST endosperm library... 40 0.41
gb|BJ232633.1|BJ232633 BJ232633 Y. Ogihara unpublished cDNA... 40 0.41
gb|BJ237310.1|BJ237310 BJ237310 Y. Ogihara unpublished cDNA... 40 0.41
gb|BJ238281.1|BJ238281 BJ238281 Y. Ogihara unpublished cDNA... 40 0.41
gb|BJ242876.1|BJ242876 BJ242876 Y. Ogihara unpublished cDNA... 40 0.41
gb|BJ311605.1|BJ311605 BJ311605 Y. Ogihara unpublished cDNA... 40 0.41
gb|CA596983.1|CA596983 wpa1c.pk013.j22 wpa1c Triticum aesti... 40 0.41
gb|CA611655.1|CA611655 wr1.pk0128.c8 wr1 Triticum aestivum ... 40 0.41
gb|CA628512.1|CA628512 wle1n.pk0001.g1 wle1n Triticum aesti... 40 0.41
gb|CA631542.1|CA631542 wle1n.pk0046.h2 wle1n Triticum aesti... 40 0.41
gb|CA642361.1|CA642361 wre1n.pk0054.d1 wre1n Triticum aesti... 40 0.41
gb|CA666204.1|CA666204 wlk1.pk0020.f9 wlk1 Triticum aestivu... 40 0.41
gb|CA681384.1|CA681384 wlm24.pk0020.d9 wlm24 Triticum aesti... 40 0.41
gb|CA688703.1|CA688703 wlm96.pk041.h24 wlm96 Triticum aesti... 40 0.41
gb|CA717613.1|CA717613 wdk4c.pk006.a10 wdk4c Triticum aesti... 40 0.41
gb|CA726965.1|CA726965 wde1f.pk002.a9 wde1f Triticum aestiv... 40 0.41
gb|CD895886.1|CD895886 G174.101D18F010821 G174 Triticum aes... 40 0.41
gb|CD895887.1|CD895887 G174.101D18R011120 G174 Triticum aes... 40 0.41
gb|CD933403.1|CD933403 GR45.120O04F010719 GR45 Triticum aes... 40 0.41
gb|CK163263.1|CK163263 FGAS015885 Triticum aestivum FGAS: L... 40 0.41
gb|CK192971.1|CK192971 FGAS001378 Triticum aestivum FGAS: L... 40 0.41
gb|CK200736.1|CK200736 FGAS009253 Triticum aestivum FGAS: L... 40 0.41
gb|CN008250.1|CN008250 WHE2639_A09_B17ZE Wheat Fusarium gra... 40 0.41
gb|CV763934.1|CV763934 FGAS058317 Triticum aestivum FGAS: L... 40 0.41
gb|CV766174.1|CV766174 FGAS060561 Triticum aestivum FGAS: L... 40 0.41
gb|CV767175.1|CV767175 FGAS061562 Triticum aestivum FGAS: L... 40 0.41
gb|CV770169.1|CV770169 FGAS064562 Triticum aestivum FGAS: L... 40 0.41
gb|DR738198.1|DR738198 FGAS083415 Triticum aestivum FGAS: L... 40 0.41
gb|DR738835.1|DR738835 FGAS084052 Triticum aestivum FGAS: L... 40 0.41
>gb|BJ279395.1|BJ279395 BJ279395 Y. Ogihara unpublished cDNA library, Wh_r Triticum aestivum
cDNA clone whr2m04 5', mRNA sequence
Length = 573
Score = 63.9 bits (32), Expect = 3e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1079 gacgacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
|||||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct: 263 gacgacgctgaagacgcccgagacggtgagcgtgcgcatgaggcggcg 216
Score = 40.1 bits (20), Expect = 0.41
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtccag 1234
|||| ||||||||||| ||||| | || ||||||||||||
Sbjct: 150 cgccatggtggtggatggcgtcagcgaggcggaggtccag 111
>gb|BQ578376.1|BQ578376 WHE0302_B09_C18ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0302_B09_C18, mRNA
sequence
Length = 684
Score = 63.9 bits (32), Expect = 3e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1079 gacgacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
|||||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct: 305 gacgacgctgaagacgcccgagacggtgagcgtgcgcatgaggcggcg 258
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtc 1231
|||||||||||||||| ||||||| || |||||||||
Sbjct: 192 cgccgtggtggtggatggcgtcggcgaggcggaggtc 156
>gb|BE414761.1|BE414761 MWL002.C06F990504 ITEC MWL Wheat Root Library Triticum aestivum
cDNA clone MWL002.C06, mRNA sequence
Length = 410
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 140 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 92
>gb|BE430047.1|BE430047 TAS006.E04R990622 ITEC TAS Wheat cDNA Library Triticum aestivum
cDNA clone TAS006.E04, mRNA sequence
Length = 403
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 105 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 57
>gb|BE517070.1|BE517070 WHE623_B09_D17ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE623_B09_D17, mRNA sequence
Length = 510
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 228 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 276
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 758 gcggctgtccgcggccatgcc 778
|||||||||||||||||||||
Sbjct: 391 gcggctgtccgcggccatgcc 411
>gb|BM137250.1|BM137250 WHE2631_D12_H23ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2631_D12_H23,
mRNA sequence
Length = 547
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 112 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 64
>gb|AL825266.1|AL825266 AL825266 p:335 Triticum aestivum cDNA clone E09_p335_plate_7, mRNA
sequence
Length = 310
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1094 gcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| |||||||||||||||||||||||||||
Sbjct: 289 gcccgagacggtgagcacgcgcatgaggcggcg 257
>gb|BQ744370.1|BQ744370 WHE4114_G10_M20ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4114_G10_M20, mRNA sequence
Length = 775
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 772 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 724
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcc 1232
||||| || ||||||| |||||||||||||| ||||||
Sbjct: 199 cgccgcggcggtggatggcgtcggggatgcgcaggtcc 162
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 758 gcggctgtccgcggccatgcc 778
|||||||||||||||||||||
Sbjct: 609 gcggctgtccgcggccatgcc 589
>gb|BJ319379.1|BJ319379 BJ319379 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf8d06 3', mRNA sequence
Length = 728
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 556 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 604
>gb|CA650026.1|CA650026 wre1n.pk0148.b1 wre1n Triticum aestivum cDNA clone wre1n.pk0148.b1
5' end, mRNA sequence
Length = 466
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 75 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 27
>gb|AJ611580.1|AJ611580 AJ611580 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 04994R, mRNA
sequence
Length = 674
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 435 cggcgacgacgtgtgggaggtccagaacgctgcacttgaggtgcgggaa 387
>gb|BE490233.1|BE490233 WHE0366_H10_P20ZS Wheat cold-stressed seedling cDNA library Triticum
aestivum cDNA clone WHE0366_H10_P20, mRNA sequence
Length = 491
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1083 acgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
|||||||||| ||||| |||||||||| |||||||||||||||
Sbjct: 267 acgctgaagacgcccgagacggtgagcgtgcgcatgaggcggcg 224
Score = 56.0 bits (28), Expect = 7e-006
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Minus
Query: 1170 atctggagaagggtggcgccgccggcgccgtggtggtggatcgcgtcggggatgcggagg 1229
|||||| | ||||||||||||||| |||||||||||||| ||||||| || |||||||
Sbjct: 180 atctgggggagggtggcgccgccg---ccgtggtggtggatggcgtcggcgaggcggagg 124
Query: 1230 tc 1231
||
Sbjct: 123 tc 122
>gb|AL822821.1|AL822821 AL822821 p:335 Triticum aestivum cDNA clone A03_p335_plate_3, mRNA
sequence
Length = 512
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1083 acgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
|||||||||| ||||| |||||||||| |||||||||||||||
Sbjct: 280 acgctgaagacgcccgagacggtgagcgtgcgcatgaggcggcg 237
Score = 56.0 bits (28), Expect = 7e-006
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Minus
Query: 1170 atctggagaagggtggcgccgccggcgccgtggtggtggatcgcgtcggggatgcggagg 1229
|||||| | ||||||||||||||| |||||||||||||| ||||||| || |||||||
Sbjct: 193 atctgggggagggtggcgccgccg---ccgtggtggtggatggcgtcggcgaggcggagg 137
Query: 1230 tc 1231
||
Sbjct: 136 tc 135
>gb|BE406921.1|BE406921 WHE0433_g09_m17zS Wheat etiolated seedling root cDNA library Triticum
aestivum cDNA clone WHE0433_g09_m17, mRNA sequence
Length = 454
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 188 gaagacgcccgatacggtgagcacgcgcatgaggcggcg 150
>gb|BQ161211.1|BQ161211 WHE0366_H10_P20ZT Wheat cold-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0366_H10_P20, mRNA
sequence
Length = 581
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 458 cttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatgtag 508
|||||| ||||||| |||||||||||| || |||| ||||||||||||||
Sbjct: 521 cttgcagttcttcagtatcttgacacagtcctcgtgtccccagtcatgtag 571
>gb|CD866826.1|CD866826 AZO2.104I16R010327 AZO2 Triticum aestivum cDNA clone AZO2104I16,
mRNA sequence
Length = 675
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 458 cttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatgtag 508
|||||| ||||||| |||||||||||| || |||| ||||||||||||||
Sbjct: 495 cttgcagttcttcagtatcttgacacagtcctcgtgtccccagtcatgtag 545
>gb|CK201053.1|CK201053 FGAS009572 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 812
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 408 gaagacgcccgagacggtgagcacgcgcatgagacggcg 370
>gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase mRNA, complete cds
Length = 1458
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 309 gaagacgcccgagacggtgagcacgcgcatgagacggcg 271
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 214 aaggatagacctcgatgatg 233
||||||||||||||||||||
Sbjct: 1171 aaggatagacctcgatgatg 1152
>gb|BQ839184.1|BQ839184 WHE4163_C09_E17ZS Wheat CS whole plant cDNA library Triticum aestivum
cDNA clone WHE4163_C09_E17, mRNA sequence
Length = 545
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 1081 cgacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
|||||||||||||||| | |||| |||||| ||||||||||||||
Sbjct: 247 cgacgctgaagatgccggagacgacgagcacacgcatgaggcggcg 202
>gb|BQ578344.1|BQ578344 WHE0301_G12_M23ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0301_G12_M23, mRNA
sequence
Length = 689
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||||||||| | |||||| || ||| ||||||||||||| |||||
Sbjct: 131 cggcgacaacgtgtgcgaggtccagaacggtgcacttgaggtgcgggaa 83
>gb|BJ315162.1|BJ315162 BJ315162 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf16a14 5', mRNA sequence
Length = 560
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 598 cggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||||||||| | |||||| || ||| ||||||||||||| |||||
Sbjct: 135 cggcgacaacgtgtgcgaggtccagaacggtgcacttgaggtgcgggaa 87
>gb|BU100113.1|BU100113 WHE3315_C12_F23ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3315_C12_F23,
mRNA sequence
Length = 695
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 591 ggagcaccggcgacaacgtgcgggaggtcaagcacgctgcacttgaggtgggggaa 646
||||| |||||||| ||| | |||||||| || ||||||||||||| ||| |||||
Sbjct: 205 ggagccccggcgacgacgagagggaggtccagtacgctgcacttgacgtgcgggaa 150
>gb|CA691512.1|CA691512 wlm96.pk053.j18 wlm96 Triticum aestivum cDNA clone wlm96.pk053.j18
5' end, mRNA sequence
Length = 488
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 397 atccaactaccacatccaagattattaccttcccacctgcatcccgtggagatatggctt 456
||||||| |||| ||| | |||||| ||||| ||||| ||||| | |||| || ||||
Sbjct: 363 atccaaccaccatatcaacgattatcacctttccaccagcatctctgggagggatagctt 304
Query: 457 gcttgcaattcttcaatatcttgacaca 484
|||||||||||||| || |||||||||
Sbjct: 303 ccttgcaattcttcagtagcttgacaca 276
>gb|CK162825.1|CK162825 FGAS015425 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1032
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 397 atccaactaccacatccaagattattaccttcccacctgcatcccgtggagatatggctt 456
||||||| |||| ||| | |||||| ||||| ||||| ||||| | |||| || ||||
Sbjct: 465 atccaaccaccatatcaacgattatcacctttccaccagcatctctgggagggatagctt 406
Query: 457 gcttgcaattcttcaatatcttgacaca 484
|||||||||||||| || |||||||||
Sbjct: 405 ccttgcaattcttcagtagcttgacaca 378
>gb|CK206856.1|CK206856 FGAS018467 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1017
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 397 atccaactaccacatccaagattattaccttcccacctgcatcccgtggagatatggctt 456
||||||| |||| ||| | |||||| ||||| ||||| ||||| | |||| || ||||
Sbjct: 510 atccaaccaccatatcaacgattatcacctttccaccagcatctctgggagggatagctt 451
Query: 457 gcttgcaattcttcaatatcttgacaca 484
|||||||||||||| || |||||||||
Sbjct: 450 ccttgcaattcttcagtagcttgacaca 423
>gb|CK213084.1|CK213084 FGAS024986 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1042
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 646 aggcggcggcgatggtggcggcgg 669
||||||||||||||||||||||||
Sbjct: 536 aggcggcggcgatggtggcggcgg 559
>gb|BE406468.1|BE406468 WHE0416_g08_n16zB Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0416_g08_n16, mRNA
sequence
Length = 363
Score = 46.1 bits (23), Expect = 0.007
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 458 cttgcaattcttcaatatcttgacacactcatcgtcaccccagtcatgtag 508
|||||| ||||| | |||||||||||| || |||| ||||||||||||||
Sbjct: 231 cttgcagttctttagtatcttgacacagtcctcgtgtccccagtcatgtag 181
>gb|BE414993.1|BE414993 MWL010.A06F990625 ITEC MWL Wheat Root Library Triticum aestivum cDNA
clone MWL010.A06, mRNA sequence
Length = 410
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1100 gacggtgagcacgcgcatgaggcggcg 1126
|||||||||||| ||||||||||||||
Sbjct: 179 gacggtgagcacacgcatgaggcggcg 153
>gb|BJ295598.1|BJ295598 BJ295598 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl4g06 3', mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 612 gggaggtcaagcacgctgcacttgaggtgggggaa 646
||||||||||||||| ||||||||| ||| |||||
Sbjct: 525 gggaggtcaagcacggtgcacttgatgtgagggaa 559
>gb|BQ162433.1|BQ162433 WHE0416_g08_n16zT Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0416_g08_n16, mRNA
sequence
Length = 501
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 290 gaagatcttcttccactcttgctcgtcacgctcaa 324
||||||||| |||||||||||||| || |||||||
Sbjct: 361 gaagatctttttccactcttgctcatctcgctcaa 395
>gb|CD905025.1|CD905025 G468.100F10F010614 G468 Triticum aestivum cDNA clone G468100F10, mRNA
sequence
Length = 675
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1203 tggtggatcgcgtcggggatgcggaggtcca 1233
|||||||| |||||||||||||| |||||||
Sbjct: 353 tggtggatggcgtcggggatgcgtaggtcca 323
>gb|CB307508.1|CB307508 HFIG493 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1100 gacggtgagcacgcgcatgaggcggcg 1126
|||||||||||| ||||||||||||||
Sbjct: 316 gacggtgagcacacgcatgaggcggcg 290
>gb|CK204735.1|CK204735 FGAS013271 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 863
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1100 gacggtgagcacgcgcatgaggcggcg 1126
|||||||||||| ||||||||||||||
Sbjct: 420 gacggtgagcacacgcatgaggcggcg 394
>gb|CK205087.1|CK205087 FGAS013624 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 865
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1100 gacggtgagcacgcgcatgaggcggcg 1126
|||||||||||| ||||||||||||||
Sbjct: 422 gacggtgagcacacgcatgaggcggcg 396
>gb|CK208098.1|CK208098 FGAS019779 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1080
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcgg 669
|||||||||||||||||||||||
Sbjct: 769 ggcggcggcgatggtggcggcgg 791
>gb|BE426259.1|BE426259 WHE0330_H03_O06ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0330_H03_O06, mRNA
sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 251 gaagatgcccgtgacggtgagc 230
>gb|BE426581.1|BE426581 WHE0336_G08_N16ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0336_G08_N16, mRNA
sequence
Length = 463
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 238 gaagatgcccgtgacggtgagc 217
>gb|BE426668.1|BE426668 WHE0331_G06_N11ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0331_G06_N11, mRNA
sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 255 gaagatgcccgtgacggtgagc 234
>gb|BM135072.1|BM135072 WHE0459_E12_E12ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE0459_E12_E12,
mRNA sequence
Length = 304
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcc 1232
||||| || ||||||| |||||||||||||| ||||||
Sbjct: 194 cgccgcggcggtggatggcgtcggggatgcgcaggtcc 157
>gb|BJ225137.1|BJ225137 BJ225137 Y. Ogihara unpublished cDNA library, Wh_dL Triticum aestivum
cDNA clone whdl20l23 5', mRNA sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcc 1232
||||| || ||||||| |||||||||||||| ||||||
Sbjct: 123 cgccgcggcggtggatggcgtcggggatgcgcaggtcc 86
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 758 gcggctgtccgcggccatgcc 778
|||||||||||||||||||||
Sbjct: 533 gcggctgtccgcggccatgcc 513
>gb|BJ314315.1|BJ314315 BJ314315 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf17c20 5', mRNA sequence
Length = 595
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcc 1232
||||| || ||||||| |||||||||||||| ||||||
Sbjct: 219 cgccgcggcggtggatggcgtcggggatgcgcaggtcc 182
>gb|BJ316153.1|BJ316153 BJ316153 Y. Ogihara unpublished cDNA library, Wh_yf Triticum aestivum
cDNA clone whyf21m04 5', mRNA sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcc 1232
||||| || ||||||| |||||||||||||| ||||||
Sbjct: 99 cgccgcggcggtggatggcgtcggggatgcgcaggtcc 62
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 758 gcggctgtccgcggccatgcc 778
|||||||||||||||||||||
Sbjct: 509 gcggctgtccgcggccatgcc 489
>gb|CA734489.1|CA734489 wpi1s.pk001.e17 wpi1s Triticum aestivum cDNA clone wpi1s.pk001.e17
5' end, mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.026
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 261 attttgtagtctttgaatccagcttcagtgaagatcttcttccactcttgctcgtcacgc 320
||||||||||| ||||||||||| || || |||||||||||||| ||||| || |||
Sbjct: 72 attttgtagtcgttgaatccagcctcgaagattatcttcttccactcctgctcatctcgc 131
Query: 321 tc 322
||
Sbjct: 132 tc 133
Score = 42.1 bits (21), Expect = 0.10
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 417 attattaccttcccacctgcatcccgtggagatatggcttgcttgcaattcttcaatatc 476
||||| |||||||| |||||||| ||| | ||||||| ||||||||| || | ||||
Sbjct: 228 attatcaccttccctcctgcatcttttggcgcgatggctttcttgcaattttttagtatc 287
Query: 477 ttgacacactcatcgtcaccccagtcatg 505
|||| || || ||||||||||| |||||
Sbjct: 288 ttgatgcagtcctcgtcaccccaatcatg 316
>gb|CK207407.1|CK207407 FGAS019028 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum
cDNA, mRNA sequence
Length = 1142
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 280 gaagatgcccgtgacggtgagc 259
>gb|CK210555.1|CK210555 FGAS022376 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum
cDNA, mRNA sequence
Length = 1089
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 303 gaagatgcccgtgacggtgagc 282
>gb|CK210829.1|CK210829 FGAS022656 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum
cDNA, mRNA sequence
Length = 1159
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 314 gaagatgcccgtgacggtgagc 293
>gb|CK217630.1|CK217630 FGAS029632 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1101
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcc 1232
||||| || ||||||| |||||||||||||| ||||||
Sbjct: 283 cgccgcggcggtggatggcgtcggggatgcgcaggtcc 246
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 758 gcggctgtccgcggccatgcc 778
|||||||||||||||||||||
Sbjct: 693 gcggctgtccgcggccatgcc 673
>gb|AJ612029.1|AJ612029 AJ612029 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 06040R, mRNA
sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcc 1232
||||| || ||||||| |||||||||||||| ||||||
Sbjct: 223 cgccgcggcggtggatggcgtcggggatgcgcaggtcc 186
>gb|CV763133.1|CV763133 FGAS057522 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 861
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 372 gaagatgcccgtgacggtgagc 351
>gb|CV767720.1|CV767720 FGAS062111 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 867
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1088 gaagatgcccgtgacggtgagc 1109
||||||||||||||||||||||
Sbjct: 372 gaagatgcccgtgacggtgagc 351
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 417,508
Number of Sequences: 636343
Number of extensions: 417508
Number of successful extensions: 126322
Number of sequences better than 0.5: 95
Number of HSP's better than 0.5 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126130
Number of HSP's gapped (non-prelim): 189
length of query: 1432
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1412
effective length of database: 354,513,379
effective search space: 500572891148
effective search space used: 500572891148
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)