BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.1
(689 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA... 303 8e-081
gb|BJ298666.1|BJ298666 BJ298666 Y. Ogihara unpublished cDNA... 303 8e-081
gb|BE492753.1|BE492753 WHE0564_D04_D04ZE Triticum monococcu... 295 2e-078
gb|BE492933.1|BE492933 WHE0563_A11_A21ZE Triticum monococcu... 295 2e-078
gb|CA599803.1|CA599803 waw1c.pk004.l9 waw1c Triticum aestiv... 182 2e-044
gb|CD926381.1|CD926381 G750.121O11F010711 G750 Triticum aes... 180 8e-044
gb|CA498726.1|CA498726 WHE3246_H11_O22ZT Wheat meiotic anth... 80 2e-013
gb|BJ214350.1|BJ214350 BJ214350 Y. Ogihara unpublished cDNA... 48 8e-004
gb|BJ221838.1|BJ221838 BJ221838 Y. Ogihara unpublished cDNA... 48 8e-004
gb|BJ266251.1|BJ266251 BJ266251 Y. Ogihara unpublished cDNA... 48 8e-004
gb|BJ266252.1|BJ266252 BJ266252 Y. Ogihara unpublished cDNA... 48 8e-004
gb|BJ266257.1|BJ266257 BJ266257 Y. Ogihara unpublished cDNA... 48 8e-004
gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: L... 46 0.003
gb|BE500883.1|BE500883 WHE0991-0994_H16_H16ZS Wheat pre-ant... 40 0.20
gb|BJ214352.1|BJ214352 BJ214352 Y. Ogihara unpublished cDNA... 40 0.20
gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anth... 40 0.20
gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anth... 40 0.20
gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anth... 40 0.20
>gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26d08 5', mRNA sequence
Length = 650
Score = 303 bits (153), Expect = 8e-081
Identities = 316/368 (85%), Gaps = 3/368 (0%)
Strand = Plus / Plus
Query: 5 gcttgtggttgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaac 64
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 111 gcttgtggttgggcatatggcatgaacatgtttgatttgtccgagtggagaaagcaaaac 170
Query: 65 atcaccgaggtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagcta 124
|||||||| |||||||| ||||||||||| |||||||| |||||||| | |||||||||
Sbjct: 171 atcaccgacgtctaccacacctggcagaacctgaatgaagacaggctactatggaagcta 230
Query: 125 ggtaccctccctgctggccttgtaaccttctggaaccgcatacgttccctcttgatcgtt 184
|| | ||||||||| |||||||| || || ||||||||| |||||||| |||||||| |
Sbjct: 231 ggcagcctccctgcaggccttgtgacgttttggaaccgc--acgttcccgcttgatcgct 288
Query: 185 cgtggcatcaactagggcttgggtacaacccaaatgtcaacgaaaaggatataaggcgag 244
||||||||| || ||||| |||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 289 cgtggcatcttctggggctcgggtacaacccaaacgtcaacgagaaggagatcaggcggg 348
Query: 245 cgacagtcatccacttcaacggaaacttgaagctcctggcttgagattggattgcccaaa 304
| | ||||| |||| |||||||||| |||| | ||||||| ||||| |||||| | |||
Sbjct: 349 catccgtcattcactacaacggaaacctgaaac-cctggctcgagatcggattgtcgaaa 407
Query: 305 taccgcaagtactggtcagcacacgtcaattacgaccaagtgtttctacaagagtgcaat 364
||||| || |||||||| || ||||||||||| ||||||||| ||| ||||||||
Sbjct: 408 taccgaaaatactggtcgcggcatgtcaattacgatcaagtgtttatacgggagtgcaac 467
Query: 365 ataaaccc 372
||||||||
Sbjct: 468 ataaaccc 475
>gb|BJ298666.1|BJ298666 BJ298666 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26d08 3', mRNA sequence
Length = 432
Score = 303 bits (153), Expect = 8e-081
Identities = 316/368 (85%), Gaps = 3/368 (0%)
Strand = Plus / Minus
Query: 5 gcttgtggttgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaac 64
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 378 gcttgtggttgggcatatggcatgaacatgtttgatttgtccgagtggagaaagcaaaac 319
Query: 65 atcaccgaggtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagcta 124
|||||||| |||||||| ||||||||||| |||||||| |||||||| | |||||||||
Sbjct: 318 atcaccgacgtctaccacacctggcagaacctgaatgaagacaggctactatggaagcta 259
Query: 125 ggtaccctccctgctggccttgtaaccttctggaaccgcatacgttccctcttgatcgtt 184
|| | ||||||||| |||||||| || || ||||||||| |||||||| |||||||| |
Sbjct: 258 ggcagcctccctgcaggccttgtgacgttttggaaccgc--acgttcccgcttgatcgct 201
Query: 185 cgtggcatcaactagggcttgggtacaacccaaatgtcaacgaaaaggatataaggcgag 244
||||||||| || ||||| |||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 200 cgtggcatcttctggggctcgggtacaacccaaacgtcaacgagaaggagatcaggcggg 141
Query: 245 cgacagtcatccacttcaacggaaacttgaagctcctggcttgagattggattgcccaaa 304
| | ||||| |||| |||||||||| |||| | ||||||| ||||| |||||| | |||
Sbjct: 140 catccgtcattcactacaacggaaacctgaaac-cctggctcgagatcggattgtcgaaa 82
Query: 305 taccgcaagtactggtcagcacacgtcaattacgaccaagtgtttctacaagagtgcaat 364
||||| || |||||||| || ||||||||||| ||||||||| ||| ||||||||
Sbjct: 81 taccgaaaatactggtcgcggcatgtcaattacgatcaagtgtttatacgggagtgcaac 22
Query: 365 ataaaccc 372
||||||||
Sbjct: 21 ataaaccc 14
>gb|BE492753.1|BE492753 WHE0564_D04_D04ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0564_D04_D04, mRNA
sequence
Length = 590
Score = 295 bits (149), Expect = 2e-078
Identities = 315/368 (85%), Gaps = 3/368 (0%)
Strand = Plus / Plus
Query: 5 gcttgtggttgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaac 64
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 40 gcttgcggttgggcatatggcatgaacatgtttgatttgtctgagtggagaaagcaaaac 99
Query: 65 atcaccgaggtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagcta 124
||||| || |||||||| ||||||||||| |||||||| |||||||| | |||||||||
Sbjct: 100 atcactgacgtctaccacacctggcagaacctgaatgaagacaggctactatggaagcta 159
Query: 125 ggtaccctccctgctggccttgtaaccttctggaaccgcatacgttccctcttgatcgtt 184
|| | ||||||||| |||||||| || |||||||||||| |||||||| || ||||| |
Sbjct: 160 ggcagcctccctgcaggccttgtgacgttctggaaccgc--acgttccccctcgatcgct 217
Query: 185 cgtggcatcaactagggcttgggtacaacccaaatgtcaacgaaaaggatataaggcgag 244
||||||||| | | ||||| |||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 218 cgtggcatctattggggctcgggtacaacccaaacgtcaacgagaaggagatcaggcggg 277
Query: 245 cgacagtcatccacttcaacggaaacttgaagctcctggcttgagattggattgcccaaa 304
| | ||||| |||| |||||||||| |||||| ||||||||||||| || || | |||
Sbjct: 278 catccgtcattcactacaacggaaacctgaagc-cctggcttgagatcgggctgtcgaaa 336
Query: 305 taccgcaagtactggtcagcacacgtcaattacgaccaagtgtttctacaagagtgcaat 364
||||| || |||||||| || ||||||||||| ||||||||| ||| ||||||||
Sbjct: 337 taccgaaaatactggtcgcggcatgtcaattacgatcaagtgtttatacgggagtgcaac 396
Query: 365 ataaaccc 372
||||||||
Sbjct: 397 ataaaccc 404
>gb|BE492933.1|BE492933 WHE0563_A11_A21ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0563_A11_A21, mRNA
sequence
Length = 522
Score = 295 bits (149), Expect = 2e-078
Identities = 315/368 (85%), Gaps = 3/368 (0%)
Strand = Plus / Plus
Query: 5 gcttgtggttgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaac 64
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 41 gcttgcggttgggcatatggcatgaacatgtttgatttgtctgagtggagaaagcaaaac 100
Query: 65 atcaccgaggtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagcta 124
||||| || |||||||| ||||||||||| |||||||| |||||||| | |||||||||
Sbjct: 101 atcactgacgtctaccacacctggcagaacctgaatgaagacaggctactatggaagcta 160
Query: 125 ggtaccctccctgctggccttgtaaccttctggaaccgcatacgttccctcttgatcgtt 184
|| | ||||||||| |||||||| || |||||||||||| |||||||| || ||||| |
Sbjct: 161 ggcagcctccctgcaggccttgtgacgttctggaaccgc--acgttccccctcgatcgct 218
Query: 185 cgtggcatcaactagggcttgggtacaacccaaatgtcaacgaaaaggatataaggcgag 244
||||||||| | | ||||| |||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 219 cgtggcatctattggggctcgggtacaacccaaacgtcaacgagaaggagatcaggcggg 278
Query: 245 cgacagtcatccacttcaacggaaacttgaagctcctggcttgagattggattgcccaaa 304
| | ||||| |||| |||||||||| |||||| ||||||||||||| || || | |||
Sbjct: 279 catccgtcattcactacaacggaaacctgaagc-cctggcttgagatcgggctgtcgaaa 337
Query: 305 taccgcaagtactggtcagcacacgtcaattacgaccaagtgtttctacaagagtgcaat 364
||||| || |||||||| || ||||||||||| ||||||||| ||| ||||||||
Sbjct: 338 taccgaaaatactggtcgcggcatgtcaattacgatcaagtgtttatacgggagtgcaac 397
Query: 365 ataaaccc 372
||||||||
Sbjct: 398 ataaaccc 405
>gb|CA599803.1|CA599803 waw1c.pk004.l9 waw1c Triticum aestivum cDNA clone waw1c.pk004.l9 5'
end, mRNA sequence
Length = 663
Score = 182 bits (92), Expect = 2e-044
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 5 gcttgtggttgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaac 64
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 502 gcttgtggttgggcatatggcatgaacatgtttgatttgtccgagtggagaaagcaaaac 561
Query: 65 atcaccgaggtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagcta 124
|||||||| |||||||| ||||||||||| |||||||| |||||||| | |||||||||
Sbjct: 562 atcaccgacgtctaccacacctggcagaacctgaatgaagacaggctactatggaagcta 621
Query: 125 ggtaccctccctgctggccttgtaaccttctggaaccgca 164
|| | ||||||||| ||||| || || ||||||||||
Sbjct: 622 ggcagcctccctgcnnnncttgtgacgttttggaaccgca 661
>gb|CD926381.1|CD926381 G750.121O11F010711 G750 Triticum aestivum cDNA clone G750121O11,
mRNA sequence
Length = 538
Score = 180 bits (91), Expect = 8e-044
Identities = 157/178 (88%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 5 gcttgtggttgggcatatggcatgaacatgtttgatttgtctgggtggagaaagcaaaac 64
||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 359 gcttgtggttgggcatatggcatgaacatgtatgatttgtccgagtggagaaagcaaaac 418
Query: 65 atcaccgaggtctaccatacctggcagaagttgaatgaaaacaggctattgtggaagcta 124
|||||||| |||||||| ||||||||||| ||||||| |||||||| | |||||||||
Sbjct: 419 atcaccgacgtctaccagacctggcagaacctgaatgacgacaggctactatggaagcta 478
Query: 125 ggtaccctccctgctggccttgtaaccttctggaaccgcatacgttccctcttgatcg 182
|| | ||||||||| |||||||| || || |||||||| |||||||| ||||||||
Sbjct: 479 ggcagcctccctgcaggccttgtgacgtttgggaaccgc--acgttcccgcttgatcg 534
>gb|CA498726.1|CA498726 WHE3246_H11_O22ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3246_H11_O22, mRNA sequence
Length = 728
Score = 79.8 bits (40), Expect = 2e-013
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 2 catgcttgtggttgggcatatggcatgaacatgtttgatttgtc 45
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 catgcttgcggttgggcatatggcatgaacatgtttgatttgtc 723
>gb|BJ214350.1|BJ214350 BJ214350 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh26p15 5', mRNA sequence
Length = 143
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 329 gtcaattacgaccaagtgtttctacaagagtgcaatataaaccc 372
||||||||||| ||||||||| ||| |||||||| ||||||||
Sbjct: 22 gtcaattacgatcaagtgtttatacgggagtgcaacataaaccc 65
>gb|BJ221838.1|BJ221838 BJ221838 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh26p15 3', mRNA sequence
Length = 104
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 329 gtcaattacgaccaagtgtttctacaagagtgcaatataaaccc 372
||||||||||| ||||||||| ||| |||||||| ||||||||
Sbjct: 93 gtcaattacgatcaagtgtttatacgggagtgcaacataaaccc 50
>gb|BJ266251.1|BJ266251 BJ266251 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k11 3', mRNA sequence
Length = 620
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 4 tgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||||||| | ||| ||||||||||||||
Sbjct: 230 tgcttgtggttgggcttttggaatgaacatgtttga 195
>gb|BJ266252.1|BJ266252 BJ266252 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k12 3', mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 4 tgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||||||| | ||| ||||||||||||||
Sbjct: 304 tgcttgtggttgggcttttggaatgaacatgtttga 269
>gb|BJ266257.1|BJ266257 BJ266257 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh25k23 3', mRNA sequence
Length = 382
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 4 tgcttgtggttgggcatatggcatgaacatgtttga 39
||||||||||||||| | ||| ||||||||||||||
Sbjct: 79 tgcttgtggttgggcttttggaatgaacatgtttga 44
>gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 823
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 77 taccatacctggcagaagttgaatgaaaacaggctattgtggaagctaggtaccctccc 135
||||||| |||||||| |||||||||||||||| ||||||| || || ||||||||
Sbjct: 668 taccataagtggcagaacatgaatgaaaacaggctgctgtggaaactggggaccctccc 726
>gb|BE500883.1|BE500883 WHE0991-0994_H16_H16ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_H16_H16, mRNA
sequence
Length = 376
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 77 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 120
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 311 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 268
>gb|BJ214352.1|BJ214352 BJ214352 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh26p17 5', mRNA sequence
Length = 152
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 329 gtcaattacgaccaagtgtttctacaagagtgcaatataaaccc 372
||||||||||| |||||||| ||| |||||||| ||||||||
Sbjct: 31 gtcaattacgataaagtgtttatacgggagtgcaacataaaccc 74
>gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3237_C01_E01, mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 77 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 120
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 187 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 230
>gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3238_C01_E02, mRNA sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 77 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 120
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 181 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 224
>gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3239_C01_F01, mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 77 taccatacctggcagaagttgaatgaaaacaggctattgtggaa 120
||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 206 taccataagtggcagaacatgaatgaaaacaggctgctgtggaa 249
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,796
Number of Sequences: 636343
Number of extensions: 90796
Number of successful extensions: 22780
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22746
Number of HSP's gapped (non-prelim): 24
length of query: 689
length of database: 367,240,239
effective HSP length: 19
effective length of query: 670
effective length of database: 355,149,722
effective search space: 237950313740
effective search space used: 237950313740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)