BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023930.2.1
(544 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD925952.1|CD925952 G750.119G22F010711 G750 Triticum aes... 149 2e-034
gb|BE446424.1|BE446424 WHE1457_E11_J21ZS Wheat etiolated se... 46 0.002
gb|CA669184.1|CA669184 wlsu1.pk021.c10 wlsu1 Triticum aesti... 42 0.039
gb|BE426099.1|BE426099 WHE0328_G03_N06ZS Wheat unstressed s... 40 0.15
gb|BJ285763.1|BJ285763 BJ285763 Y. Ogihara unpublished cDNA... 40 0.15
gb|CA669978.1|CA669978 wlsu1.pk024.o20 wlsu1 Triticum aesti... 40 0.15
gb|CV765911.1|CV765911 FGAS060298 Triticum aestivum FGAS: L... 40 0.15
>gb|CD925952.1|CD925952 G750.119G22F010711 G750 Triticum aestivum cDNA clone G750119G22,
mRNA sequence
Length = 688
Score = 149 bits (75), Expect = 2e-034
Identities = 160/187 (85%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 13 aactattggatgctacactttttcaaggaatctagcggcgccatcctccatcctacagcc 72
||||| |||||||||||||| |||||||| || |||||||||| | | || || ||||||
Sbjct: 380 aactactggatgctacacttcttcaaggactcgagcggcgccacctttcaccccacagcc 439
Query: 73 att-caggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
||| |||||||||| |||||||||| ||||||| ||||||||||| ||||||| | ||||
Sbjct: 440 attgcaggtctccaactacgatcagatggttgcatctgccatcacctggcagagccctaa 499
Query: 132 agacaagagcacttacctcaggataaaggtggtgaatttcggcaaccaagctgtggatct 191
|||||||||||||||||| | |||||||| || || ||||||| | |||| |||||||
Sbjct: 500 agacaagagcacttacctgaaaataaaggtcgtaaacttcggcagcaaagccatggatct 559
Query: 192 gaacata 198
||||||
Sbjct: 560 caacata 566
Score = 56.0 bits (28), Expect = 3e-006
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 269 cgcttgacgagaactccttccagcagccagagaaggtggcgccagtgtcgag 320
|||| ||||||||||||||| |||||||||| ||||||| ||| ||||||||
Sbjct: 638 cgctcgacgagaactccttcgagcagccagaaaaggtgg-gccggtgtcgag 688
>gb|BE446424.1|BE446424 WHE1457_E11_J21ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1457_E11_J21,
mRNA sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 277 gagaactccttccagcagccagagaaggtgg 307
||||||||||||||||| ||||| |||||||
Sbjct: 357 gagaactccttccagcaaccagacaaggtgg 387
>gb|CA669184.1|CA669184 wlsu1.pk021.c10 wlsu1 Triticum aestivum cDNA clone wlsu1.pk021.c10
5' end, mRNA sequence
Length = 518
Score = 42.1 bits (21), Expect = 0.039
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 364 ccgtactccctcacctcatttgacctgctgctggagccgagcaa 407
||||||||||||||||| ||||| || || |||| ||||||||
Sbjct: 305 ccgtactccctcacctcgtttgatctcctnttggacccgagcaa 262
>gb|BE426099.1|BE426099 WHE0328_G03_N06ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0328_G03_N06, mRNA
sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 364 ccgtactccctcacctcatttgacctgctgctggagccgagcaa 407
||||||||||||||||| ||||| || || |||| ||||||||
Sbjct: 495 ccgtactccctcacctcgtttgatctcctcttggacccgagcaa 538
>gb|BJ285763.1|BJ285763 BJ285763 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr9n08 3', mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 364 ccgtactccctcacctcatttgacctgctgctggagccgagcaa 407
||||||||||||||||| ||||| || || |||| ||||||||
Sbjct: 144 ccgtactccctcacctcgtttgatctcctcttggacccgagcaa 101
>gb|CA669978.1|CA669978 wlsu1.pk024.o20 wlsu1 Triticum aestivum cDNA clone wlsu1.pk024.o20
5' end, mRNA sequence
Length = 442
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 364 ccgtactccctcacctcatttgacctgctgctggagccgagcaa 407
||||||||||||||||| ||||| || || |||| ||||||||
Sbjct: 310 ccgtactccctcacctcgtttgatctcctcttggacccgagcaa 267
>gb|CV765911.1|CV765911 FGAS060298 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 364 ccgtactccctcacctcatttgacctgctgctggagccgagcaa 407
||||||||||||||||| ||||| || || |||| ||||||||
Sbjct: 519 ccgtactccctcacctcgtttgatctcctcttggacccgagcaa 562
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,574
Number of Sequences: 636343
Number of extensions: 112574
Number of successful extensions: 31784
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31764
Number of HSP's gapped (non-prelim): 19
length of query: 544
length of database: 367,240,239
effective HSP length: 19
effective length of query: 525
effective length of database: 355,149,722
effective search space: 186453604050
effective search space used: 186453604050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)