BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023663.2.1
(613 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA500452.1|CA500452 WHE4019_G05_N09ZT Wheat meiotic anth... 182 2e-044
gb|CN011806.1|CN011806 WHE3889_A05_B09ZS Wheat Fusarium gra... 40 0.17
>gb|CA500452.1|CA500452 WHE4019_G05_N09ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4019_G05_N09, mRNA sequence
Length = 735
Score = 182 bits (92), Expect = 2e-044
Identities = 206/244 (84%)
Strand = Plus / Minus
Query: 353 acatctttgtcagtagtattatgcaatggtttctgagagttcggttcaccaaacatgaca 412
||||| ||||||| |||||| ||||||| ||||||| |||||||| ||||||||||||
Sbjct: 592 acatccttgtcagcagtattttgcaatgacttctgagtattcggttccccaaacatgaca 533
Query: 413 gggctcctagttttcctgcgctttgtgattcttccatttgctgtctcaacttcgtattca 472
| |||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct: 532 gtgctcttagttttcctgcgctttgtgatttttccatttgctgtctccacttcatattca 473
Query: 473 gggtgggttacctttctatgtttaggaatatcctgagacactttctctacctttctcaac 532
|||| ||||||||||| || |||| || ||||||| ||||||||||||| ||||
Sbjct: 472 tggtgtgttacctttctgtgattagtaacatcctgacttgctttctctaccttcctcatt 413
Query: 533 atgttcgaaattggtgattgtaaaatcccaggtaagtttacgtccttccgattggtctcc 592
| ||| |||||||| || |||| || |||| || |||||| |||||||| ||||||||
Sbjct: 412 acgttagaaattggcgagtgtataactccagatatgtttacatccttccgtttggtctca 353
Query: 593 ggac 596
||||
Sbjct: 352 ggac 349
Score = 99.6 bits (50), Expect = 2e-019
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 229 cgtgagcttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcaga 288
|||||||||||| |||| ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 716 cgtgagcttctaaccaaatgcataagggtcatcagcatatggattcaaggagccctcaga 657
Query: 289 gaataattcaccaatgtttgcaggatgtgcacgggatc 326
||||||||||| || || |||||||| | ||||||||
Sbjct: 656 aaataattcaccgatattggcaggatggggacgggatc 619
>gb|CN011806.1|CN011806 WHE3889_A05_B09ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3889_A05_B09,
mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 421 agttttcctgcgctttgtgattcttccatttg 452
||||||||| | || |||||||||||||||||
Sbjct: 621 agttttccttcactctgtgattcttccatttg 590
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,402
Number of Sequences: 636343
Number of extensions: 74402
Number of successful extensions: 19384
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19380
Number of HSP's gapped (non-prelim): 3
length of query: 613
length of database: 367,240,239
effective HSP length: 19
effective length of query: 594
effective length of database: 355,149,722
effective search space: 210958934868
effective search space used: 210958934868
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)