BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD933956.1|CD933956 GR45.122I21F010720 GR45 Triticum aes... 462 e-128
gb|BQ752608.1|BQ752608 WHE4117_A09_A17ZS Wheat salt-stresse... 458 e-127
gb|CV771144.1|CV771144 FGAS065537 Triticum aestivum FGAS: L... 452 e-125
gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: L... 452 e-125
gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic flor... 325 3e-087
gb|DN829533.1|DN829533 KUCD01_11_E11_T3 WSWR cDNA library T... 240 1e-061
gb|CA638413.1|CA638413 wre1n.pk0013.c2 wre1n Triticum aesti... 161 1e-037
gb|CA630524.1|CA630524 wle1n.pk0036.a9 wle1n Triticum aesti... 56 4e-006
gb|CD862482.1|CD862482 AZO1.103K07F010126 AZO1 Triticum aes... 42 0.061
gb|CK209324.1|CK209324 FGAS021086 Triticum aestivum FGAS: L... 40 0.24
>gb|CD933956.1|CD933956 GR45.122I21F010720 GR45 Triticum aestivum cDNA clone GR45122I21,
mRNA sequence
Length = 546
Score = 462 bits (233), Expect = e-128
Identities = 348/385 (90%), Gaps = 1/385 (0%)
Strand = Plus / Minus
Query: 463 acaaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaaggg 522
|||||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||
Sbjct: 512 acaaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagaggg 453
Query: 523 tgtgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagc 582
|||||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| |||
Sbjct: 452 tgtgaataatccacatagttgtcccagaagcccttgtacttctccatcccaattttcagc 393
Query: 583 catggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatcc 642
|||||||||| |||||||||||| |||| ||||||||||||||| |||||| || ||||
Sbjct: 392 catggcttcaaatttccattgtaatgcaatactgcaccttccttaatagtatcaggatca 333
Query: 643 acagttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagcca 702
|||||||||||||| || ||||| ||||||||||| || |||| ||||||||||||||||
Sbjct: 332 acagttgtgtagcccagccccaagacatgccattttgggtccagtgcttcaaccaagcca 273
Query: 703 tagaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattg 761
|||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||
Sbjct: 272 tagaaagcaagaagcccaggtggtaaagatccaagcttccacagggtatgatcagcattg 213
Query: 762 cgctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatca 821
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 212 cgctcctgccaataatgatatatacctgtgacattcttgttcctccattcaacaagatca 153
Query: 822 agcacgttcataccaaatgcccagc 846
||||| ||||||||||| |||||||
Sbjct: 152 agcacattcataccaaacgcccagc 128
>gb|BQ752608.1|BQ752608 WHE4117_A09_A17ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4117_A09_A17, mRNA sequence
Length = 834
Score = 458 bits (231), Expect = e-127
Identities = 346/383 (90%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 564 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 505
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
|||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 504 tgaataatccacatagttgtcccagaagcccttgtacttctccatcccaattttcagcca 445
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
|||||||| |||||||||||| |||| ||||||||||||||| |||||| || |||| ||
Sbjct: 444 tggcttcaaatttccattgtaatgcaatactgcaccttccttaatagtatcaggatcaac 385
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
|||||||||||| || ||||| ||||||||||| || |||| ||||||||||||||||||
Sbjct: 384 agttgtgtagcccagccccaagacatgccattttgggtccagtgcttcaaccaagccata 325
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||||
Sbjct: 324 gaaagcaagaagcccaggtggtaaagatccaagcttccacagggtatgatcagcattgcg 265
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 264 ctcctgccaataatgatatatacctgtgacattcttgttcctccattcaacaagatcaag 205
Query: 824 cacgttcataccaaatgcccagc 846
||| ||||||||||| |||||||
Sbjct: 204 cacattcataccaaacgcccagc 182
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 244 gttcaagtagcagcctactg 263
||||||||||||||||||||
Sbjct: 792 gttcaagtagcagcctactg 773
>gb|CV771144.1|CV771144 FGAS065537 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 905
Score = 452 bits (228), Expect = e-125
Identities = 345/383 (90%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 650 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 591
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
|||||| ||||||||||| ||||| |||| ||||||||||||||| |||||| | |||||
Sbjct: 590 tgaataatccacatagttgtcccagaagcccttgtacttctccatcccaattntcagcca 531
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
|||||||| |||||||||||| |||| ||||||||||||||| |||||| || |||| ||
Sbjct: 530 tggcttcaaatttccattgtaatgcaatactgcaccttccttaatagtatcaggatcaac 471
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
|||||||||||| || ||||| ||||||||||| || |||| ||||||||||||||||||
Sbjct: 470 agttgtgtagcccagccccaagacatgccattttgggtccagtgcttcaaccaagccata 411
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||||
Sbjct: 410 gaaagcaagaagcccaggtggtaaagatccaagcttccacagggtatgatcagcattgcg 351
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 350 ctcctgccaataatgatatatacctgtgacattcttgttcctccattcaacaagatcaag 291
Query: 824 cacgttcataccaaatgcccagc 846
||| ||||||||||| |||||||
Sbjct: 290 cacattcataccaaacgcccagc 268
>gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1160
Score = 452 bits (228), Expect = e-125
Identities = 347/384 (90%), Gaps = 2/384 (0%)
Strand = Plus / Minus
Query: 465 aaaaattctaatgttgatacacatcaa-tcaacgcatgaagcactgctgaatcaaagggt 523
|||| ||||||| ||||||||||| || ||| |||||||||||| | |||| || |||||
Sbjct: 787 aaaagttctaatattgatacacattaaatcagcgcatgaagcaccgttgaagcagagggt 728
Query: 524 gtgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcc 583
||||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| ||||
Sbjct: 727 gtgaataatccacatagttgtcccagaagcccttgtacttctccatcccaattttcagcc 668
Query: 584 atggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatcca 643
||||||||| |||||||||||| |||| ||||||||||||||| |||||| || ||||||
Sbjct: 667 atggcttcaaatttccattgtaatgcaatactgcaccttccttaatagtatcaggatcca 608
Query: 644 cagttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccat 703
||||||||||||| || ||||| ||||||||||| || |||| |||||||||||||||||
Sbjct: 607 cagttgtgtagcccagccccaagacatgccattttgggtccagtgcttcaaccaagccat 548
Query: 704 agaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgc 762
||||||||||||| |||||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct: 547 agaaagcaagaagcccaggtggtaaagatccaagcttccacagggtatgatcagcattgc 488
Query: 763 gctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaa 822
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 487 gctcctgccaataatgatatatacctgtgacattcttgttcctccattcaacaagatcaa 428
Query: 823 gcacgttcataccaaatgcccagc 846
|||| ||||||||||| |||||||
Sbjct: 427 gcacattcataccaaacgcccagc 404
>gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4362_C07_F14, mRNA sequence
Length = 747
Score = 325 bits (164), Expect = 3e-087
Identities = 240/264 (90%), Gaps = 1/264 (0%)
Strand = Plus / Minus
Query: 584 atggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatcca 643
||||||||| ||||||||||| |||| ||||||||||||||| |||||| || |||| |
Sbjct: 747 atggcttcaagtttccattgtaatgcaatactgcaccttccttaatagtatcaggatcga 688
Query: 644 cagttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccat 703
||||||||||||| || ||||| ||||||||||| || || |||||||||||||||||||
Sbjct: 687 cagttgtgtagcccagccccaagacatgccattttgggtctaatgcttcaaccaagccat 628
Query: 704 agaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgc 762
||||||||||||| |||||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct: 627 agaaagcaagaagcccaggtggtaaagatccaagcttccacagggtatgatcagcattgc 568
Query: 763 gctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaa 822
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 567 gctcctgccaataatgatatatacctgtgacattcttgttcctccattcaacaagatcaa 508
Query: 823 gcacgttcataccaaatgcccagc 846
|||| ||||||||||| |||||||
Sbjct: 507 gcacattcataccaaacgcccagc 484
>gb|DN829533.1|DN829533 KUCD01_11_E11_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 943
Score = 240 bits (121), Expect = 1e-061
Identities = 161/173 (93%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 667 acatgccatttgggatccaatgcttcaaccaagccatagaaagcaagaagtccaggtggt 726
||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 942 acatgccattttgggtccagtgcttcaaccaagccatagaaagcaagaagcccaggtggt 883
Query: 727 aaagacccaagcttccatagagtatgatca-cattgcgctcctgccaataatgatatatg 785
||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct: 882 aaagatccaagcttccacagggtatgatcagcattgcgctcctgccaataatgatatata 823
Query: 786 cctgtcacattcttgttcctccattcaaccagatcaagcacgttcataccaaa 838
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 822 cctgtgacattcttgttcctccattcaacaagatcaagcacattcataccaaa 770
>gb|CA638413.1|CA638413 wre1n.pk0013.c2 wre1n Triticum aestivum cDNA clone wre1n.pk0013.c2
5' end, mRNA sequence
Length = 329
Score = 161 bits (81), Expect = 1e-037
Identities = 127/143 (88%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||| ||||| || || ||||||| ||||| ||||| || |||| |||| |||||||
Sbjct: 219 gaaagcnagaagcccnngttgtaaaganccaagnttccacagggtatnatcagcattgcg 160
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 159 ctcctgccaataatgatatatacctgtgacattcttgttcctccattcaacaagatcaag 100
Query: 824 cacgttcataccaaatgcccagc 846
||| ||||||||||| |||||||
Sbjct: 99 cacattcataccaaacgcccagc 77
>gb|CA630524.1|CA630524 wle1n.pk0036.a9 wle1n Triticum aestivum cDNA clone wle1n.pk0036.a9
5' end, mRNA sequence
Length = 445
Score = 56.0 bits (28), Expect = 4e-006
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 107 caaaacttgttgtaacacatcaataatttaaaatcaattctaca 150
|||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 28 caaaacttgttgtagcacctcaataattt-aaatcaattctaca 70
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 244 gttcaagtagcagcctactg 263
||||||||||||||||||||
Sbjct: 160 gttcaagtagcagcctactg 179
>gb|CD862482.1|CD862482 AZO1.103K07F010126 AZO1 Triticum aestivum cDNA clone AZO1103K07,
mRNA sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.061
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
|||||||||||||| || |||||||||||
Sbjct: 268 agccatggcttcatgttcccattgtagtg 240
>gb|CK209324.1|CK209324 FGAS021086 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1104
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 244 gttcaagtagcagcctactg 263
||||||||||||||||||||
Sbjct: 267 gttcaagtagcagcctactg 248
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,864
Number of Sequences: 636343
Number of extensions: 137864
Number of successful extensions: 36780
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36753
Number of HSP's gapped (non-prelim): 19
length of query: 846
length of database: 367,240,239
effective HSP length: 19
effective length of query: 827
effective length of database: 355,149,722
effective search space: 293708820094
effective search space used: 293708820094
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)