BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950080.2.1
(687 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ246804.1|BQ246804 TaE15005C07R TaE15 Triticum aestivum... 509 e-143
gb|CK216360.1|CK216360 FGAS028348 Triticum aestivum FGAS: L... 466 e-129
gb|CA609769.1|CA609769 wr1.pk0110.e1 wr1 Triticum aestivum ... 412 e-113
gb|BQ244073.1|BQ244073 TaE15005C07F TaE15 Triticum aestivum... 371 e-101
gb|CA593339.1|CA593339 wpa1c.pk003.g18 wpa1c Triticum aesti... 260 1e-067
gb|CA736833.1|CA736833 wpi1s.pk008.d3 wpi1s Triticum aestiv... 260 1e-067
gb|CA712629.1|CA712629 wdk3c.pk006.c17 wdk3c Triticum aesti... 145 5e-033
gb|CA636707.1|CA636707 wle1n.pk0111.e11 wle1n Triticum aest... 40 0.20
>gb|BQ246804.1|BQ246804 TaE15005C07R TaE15 Triticum aestivum cDNA clone TaE15005C07R, mRNA
sequence
Length = 660
Score = 509 bits (257), Expect = e-143
Identities = 440/501 (87%)
Strand = Plus / Plus
Query: 37 cgcgcgtccgaacgtgctagtgacggggacgccggggacggggaagacgaccacgtgctc 96
|||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 127 cgcgcggcccaacgtgctggtgacggggacgccggggacggggaagacgacgacgtgctc 186
Query: 97 gctccttgccgacgccgcaggcctccgccacgtcaacatcggcgacctagtccgcgagaa 156
||||| ||||||||||| ||| | |||||||||||||||||||| |||||||||||
Sbjct: 187 cctcctcgccgacgccgcgggcgtggcgcacgtcaacatcggcgacctggtccgcgagaa 246
Query: 157 gagccttcacgacggctgggacgccgacctcgagtgccatgtcatcaacgaggacctggt 216
| |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 247 gggcctccacgacggctgggacgaggacctcgactgccacgtcatcaacgaggacctggt 306
Query: 217 gtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatg 276
|| || ||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 307 ttgtgatgagcttgaggacaggatggaagaaggcggtgtactagtagattatcacggatg 366
Query: 277 tgatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaat 336
|||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||
Sbjct: 367 tgatttctttccagaacgttggtttgaccttgtggtcgtgcttcagacagacaactcaat 426
Query: 337 tctgcatgatcgcctgacgggcagaggttacatgggttccaagctcgccaacaacataga 396
||||||||||||| |||| ||||||| ||||||||| |||||||| | |||||||||||
Sbjct: 427 tctgcatgatcgcttgactagcagaggctacatgggtgccaagctcacaaacaacataga 486
Query: 397 gtgcgaaatcttccaagtgctcctcgaggaggcgagggagagctacagagaggacatcgt 456
|||||| |||||||| |||||||| |||||||||||||||||||||| ||||| || ||
Sbjct: 487 gtgcgagatcttccaggtgctcctggaggaggcgagggagagctacaaggaggatatagt 546
Query: 457 gatgccattgcgaagtgacaacgtggaggatattagtaggaacgtaggtgcattgacaga 516
|||||| ||||||| |||| ||| |||||||| || ||||| ||| | | ||||| ||
Sbjct: 547 gatgccgctgcgaagcgacagcgtcgaggatatcagcaggaatgtaagcacgttgacgga 606
Query: 517 ctgggtaaacaattggagacc 537
||| ||||||| ||||||||
Sbjct: 607 gtggataaacaactggagacc 627
>gb|CK216360.1|CK216360 FGAS028348 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1079
Score = 466 bits (235), Expect = e-129
Identities = 383/431 (88%), Gaps = 1/431 (0%)
Strand = Plus / Minus
Query: 60 cggggacgccggggacggggaagacgaccacgtgctcgctccttgccgacgccgcaggcc 119
||||||| |||||||||||||||||||| |||||||| ||||| |||||| |||| |||
Sbjct: 761 cggggaccccggggacggggaagacgacgacgtgctccctcctcgccgaccccgcgggcg 702
Query: 120 tccgc-cacgtcaacatcggcgacctagtccgcgagaagagccttcacgacggctgggac 178
| || |||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct: 701 tgggcgcacgtcaacatcggcgacctggtccgcgagaagggcctccacgacggctgggac 642
Query: 179 gccgacctcgagtgccatgtcatcaacgaggacctggtgtgcgacgagcttgaggacatg 238
| |||||||| ||||| |||||||||||||||||||| || || ||||||||||||| |
Sbjct: 641 gaggacctcgactgccacgtcatcaacgaggacctggtttgtgatgagcttgaggacagg 582
Query: 239 atggaagaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttgg 298
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 581 atggaagaaggcggtgtactagtagattatcacggatgtgatttctttccagaacgttgg 522
Query: 299 tttgacctcgtagttgtgctccagactgacaactcaattctgcatgatcgcctgacgggc 358
|||||||| || || ||||| ||||| |||||||||||||||||||||||| |||| ||
Sbjct: 521 tttgaccttgtggtcgtgcttcagacagacaactcaattctgcatgatcgcttgactagc 462
Query: 359 agaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgctc 418
||||| ||||||||| |||||||| | ||||||||||||||||| |||||||| ||||||
Sbjct: 461 agaggctacatgggtgccaagctcacaaacaacatagagtgcgagatcttccaggtgctc 402
Query: 419 ctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaac 478
|| |||||||||||||||||||||| ||||| || |||||||| ||||||| |||| |
Sbjct: 401 ctggaggaggcgagggagagctacaaggaggatatagtgatgccgctgcgaagcgacagc 342
Query: 479 gtggaggatat 489
|| ||||||||
Sbjct: 341 gtcgaggatat 331
>gb|CA609769.1|CA609769 wr1.pk0110.e1 wr1 Triticum aestivum cDNA clone wr1.pk0110.e1 5'
end, mRNA sequence
Length = 474
Score = 412 bits (208), Expect = e-113
Identities = 340/384 (88%), Gaps = 1/384 (0%)
Strand = Plus / Plus
Query: 37 cgcgcgtccgaacgtgctagtgacggggacgccggggacggggaagacgaccacgtgctc 96
|||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 16 cgcgcggcccaacgtgctggtgacggggacgccggggacggggaagacgacgacgtgctc 75
Query: 97 gctccttgccgacgccgcaggcctccgccacgtcaacatcggcgacctagtccgcgagaa 156
||||| ||||||||||| ||| | |||||||||||||||||||| |||||||||||
Sbjct: 76 cctcctcgccgacgccgcgggcgtggcgcacgtcaacatcggcgacctggtccgcgagaa 135
Query: 157 gagccttcacgacggctgggacgccgacctcgagtgccatgtcatcaacgaggacctggt 216
| |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 136 gggcctccacgacggctgggacgaggacctcgactgccacgtcatcaacgaggacctggt 195
Query: 217 gtgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatg 276
||||| ||||| ||||||| |||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 196 ttgcgatgagctcgaggacaggatggaagaaggcggtgtactagtagattatcacggatg 255
Query: 277 tgatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaat 336
|||||||||||||||||||||||||||||| || || ||||| || || |||||||||||
Sbjct: 256 tgatttctttccagaacgttggtttgaccttgtggtcgtgcttcanaccgacaactcaat 315
Query: 337 tctgcatgatcgcctgacgggcagaggttacatgggttccaagctcgccaacaacataga 396
||||||||||||| ||||| ||||||| ||||||||| ||| |||| | ||||||||| |
Sbjct: 316 tctgcatgatcgcttgacgagcagaggctacatgggtgccangctcacaaacaacatana 375
Query: 397 gtgcgaaatcttccaagtgctcct 420
||| || || || |||||||||||
Sbjct: 376 gtgtgagatntt-caagtgctcct 398
>gb|BQ244073.1|BQ244073 TaE15005C07F TaE15 Triticum aestivum cDNA clone TaE15005C07F, mRNA
sequence
Length = 601
Score = 371 bits (187), Expect = e-101
Identities = 325/371 (87%)
Strand = Plus / Minus
Query: 167 gacggctgggacgccgacctcgagtgccatgtcatcaacgaggacctggtgtgcgacgag 226
||||||||||||| |||||||| ||||| |||||||||||||||||||| || || |||
Sbjct: 601 gacggctgggacgaggacctcgactgccacgtcatcaacgaggacctggtttgtgatgag 542
Query: 227 cttgaggacatgatggaagaaggtggtatactagtagattaccacggatgtgatttcttt 286
|||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct: 541 cttgaggacaggatggaagaaggcggtgtactagtagattatcacggatgtgatttcttt 482
Query: 287 ccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaattctgcatgat 346
|||||||||||||||||||| || || ||||| ||||| |||||||||||||||||||||
Sbjct: 481 ccagaacgttggtttgaccttgtggtcgtgcttcagacagacaactcaattctgcatgat 422
Query: 347 cgcctgacgggcagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatc 406
||| |||| ||||||| ||||||||| |||||||| | ||||||||||||||||| |||
Sbjct: 421 cgcttgactagcagaggctacatgggtgccaagctcacaaacaacatagagtgcgagatc 362
Query: 407 ttccaagtgctcctcgaggaggcgagggagagctacagagaggacatcgtgatgccattg 466
||||| |||||||| |||||||||||||||||||||| ||||| || |||||||| ||
Sbjct: 361 ttccaggtgctcctggaggaggcgagggagagctacaaggaggatatagtgatgccgctg 302
Query: 467 cgaagtgacaacgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaac 526
||||| |||| ||| |||||||| || ||||| ||| | | ||||| || ||| |||||
Sbjct: 301 cgaagcgacagcgtcgaggatatcagcaggaatgtaagcacgttgacggagtggataaac 242
Query: 527 aattggagacc 537
|| ||||||||
Sbjct: 241 aactggagacc 231
>gb|CA593339.1|CA593339 wpa1c.pk003.g18 wpa1c Triticum aestivum cDNA clone wpa1c.pk003.g18
5' end, mRNA sequence
Length = 473
Score = 260 bits (131), Expect = 1e-067
Identities = 216/245 (88%)
Strand = Plus / Plus
Query: 245 gaaggtggtatactagtagattaccacggatgtgatttctttccagaacgttggtttgac 304
||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaggcggtgtactagtanattatcacggatgtgatttctttccagaacgttggtttgac 60
Query: 305 ctcgtagttgtgctccagactgacaactcaattctgcatgatcgcctgacgggcagaggt 364
|| || || ||||| ||||| |||||||||||||||||||||||| |||| |||||||
Sbjct: 61 cttgtggtcgtgcttcagacagacaactcaattctgcatgatcgcttgactagcagaggc 120
Query: 365 tacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgctcctcgag 424
||||||||| |||||||| | ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 121 tacatgggtgccaagctcacaaacaacatagagtgcgagatcttccaggtgctcctggag 180
Query: 425 gaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaacgtggag 484
||||||||||||||||||| ||||| || |||||||| ||||||| |||| ||| ||
Sbjct: 181 gaggcgagggagagctacaaggaggatatagtgatgccgctgcgaagcgacagcgtcnag 240
Query: 485 gatat 489
|||||
Sbjct: 241 gatat 245
>gb|CA736833.1|CA736833 wpi1s.pk008.d3 wpi1s Triticum aestivum cDNA clone wpi1s.pk008.d3 5'
end, mRNA sequence
Length = 338
Score = 260 bits (131), Expect = 1e-067
Identities = 218/247 (88%)
Strand = Plus / Minus
Query: 255 tactagtagattaccacggatgtgatttctttccagaacgttggtttgacctcgtagttg 314
||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 317 tactagtagattatcacggatgtgatttctttccagaacgttggtttgaccttgtggtcg 258
Query: 315 tgctccagactgacaactcaattctgcatgatcgcctgacgggcagaggttacatgggtt 374
|||| ||||| ||||| |||||||||||||||||| |||| ||||||| ||||||||
Sbjct: 257 tgcttcagaccgacaattcaattctgcatgatcgcttgactagcagaggctacatggggg 198
Query: 375 ccaagctcgccaacaacatagagtgcgaaatcttccaagtgctcctcgaggaggcgaggg 434
|||||||| | ||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct: 197 ccaagctcacaaacaacatagagtgcgagatcttccaggtgctcctggaggaggcgaggg 138
Query: 435 agagctacagagaggacatcgtgatgccattgcgaagtgacaacgtggaggatattagta 494
|||| |||| ||||| || ||||||||| ||||||| |||| ||| |||||||| || |
Sbjct: 137 agagttacaaggaggatatagtgatgccactgcgaagcgacagcgtcgaggatatcagca 78
Query: 495 ggaacgt 501
|||||||
Sbjct: 77 ggaacgt 71
>gb|CA712629.1|CA712629 wdk3c.pk006.c17 wdk3c Triticum aestivum cDNA clone wdk3c.pk006.c17
5' end, mRNA sequence
Length = 529
Score = 145 bits (73), Expect = 5e-033
Identities = 126/141 (89%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 37 cgcgcgtccgaacgtgctagtgacggggacgccggggacggggaagacgaccacgtgctc 96
|||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 159 cgcgcggcccaacgtgctggtgacggggacgccggggacggggaagacgacgacgtgctc 218
Query: 97 gctccttgccgacgccgcaggcctccgc-cacgtcaacatcggcgacctagtccgcgaga 155
||||| ||||||||||| ||| | || |||||||||||||||||||| ||||||||||
Sbjct: 219 cctcctcgccgacgccgcgggcgttggcgcacgtcaacatcggcgacctggtccgcgaga 278
Query: 156 agagccttcacgacggctggg 176
|| | || |||||||||||||
Sbjct: 279 ag-ggctccacgacggctggg 298
>gb|CA636707.1|CA636707 wle1n.pk0111.e11 wle1n Triticum aestivum cDNA clone
wle1n.pk0111.e11 5' end, mRNA sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 gcggcggcggctcgcggcac 37
||||||||||||||||||||
Sbjct: 376 gcggcggcggctcgcggcac 395
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 211,464
Number of Sequences: 636343
Number of extensions: 211464
Number of successful extensions: 52406
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52392
Number of HSP's gapped (non-prelim): 9
length of query: 687
length of database: 367,240,239
effective HSP length: 19
effective length of query: 668
effective length of database: 355,149,722
effective search space: 237240014296
effective search space used: 237240014296
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)