BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2823202.2.1
(529 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ264202.1|BJ264202 BJ264202 Y. Ogihara unpublished cDNA... 100 2e-019
gb|BJ259315.1|BJ259315 BJ259315 Y. Ogihara unpublished cDNA... 98 7e-019
gb|AJ613122.1|AJ613122 AJ613122 Triticum turgidum subsp. du... 98 7e-019
gb|BE444988.1|BE444988 WHE1130_B07_C14ZS Wheat etiolated se... 84 1e-014
gb|CD874917.1|CD874917 AZO3.103L02R011123 AZO3 Triticum aes... 84 1e-014
gb|BJ283684.1|BJ283684 BJ283684 Y. Ogihara unpublished cDNA... 82 4e-014
gb|BQ901428.1|BQ901428 Ta02_19e12_R Ta02_AAFC_ECORC_Fusariu... 76 3e-012
gb|BE430303.1|BE430303 SUN001.D07R991203 ITEC SUN Wheat cDN... 70 2e-010
gb|BE444298.1|BE444298 WHE1117_E07_I13ZS Wheat etiolated se... 54 1e-005
gb|BE445734.1|BE445734 WHE1453_B10_D19ZS Wheat etiolated se... 54 1e-005
gb|CD906744.1|CD906744 G468.105G18F011012 G468 Triticum aes... 50 2e-004
gb|CK161699.1|CK161699 FGAS014271 Triticum aestivum FGAS: L... 50 2e-004
gb|CW511884.1|CW511884 Shotgun_P23_082.g1_Ta004 Triticum ae... 40 0.15
gb|CA664135.1|CA664135 wlmk1.pk036.d11 wlmk1 Triticum aesti... 40 0.15
>gb|BJ264202.1|BJ264202 BJ264202 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh12g22 3', mRNA sequence
Length = 478
Score = 99.6 bits (50), Expect = 2e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 84 acctgtgctgacaagtacgctgcagagagcgcgaagctggcctgcacggcgtacgagggt 143
||||| ||||||||||||||| ||||| ||| ||| |||||| |||||| ||||
Sbjct: 446 acctgcgctgacaagtacgctcaggagagtgcggcgctcgcctgcgacgcgtacaagggc 387
Query: 144 gtcgaccaagactccaccttggaagatgactacttcttcgccgcgctgccggtggttcag 203
||| | || ||||||||||| | |||||| |||| || ||| ||||||||||| ||| ||
Sbjct: 386 gtcaagcaggactccaccttaggagatgagtactactccgcggcgctgccggtcgttgag 327
Query: 204 aagaggatcgcgcaagggggcgtcaggctggccgcgatcctcaacaggat 253
||||||||||| || || |||||||||||||| || ||||||||| ||||
Sbjct: 326 aagaggatcgctcagggcggcgtcaggctggcggccatcctcaaccggat 277
>gb|BJ259315.1|BJ259315 BJ259315 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh12g22 5', mRNA sequence
Length = 465
Score = 97.6 bits (49), Expect = 7e-019
Identities = 139/169 (82%)
Strand = Plus / Plus
Query: 85 cctgtgctgacaagtacgctgcagagagcgcgaagctggcctgcacggcgtacgagggtg 144
|||| ||||||||||||||| ||||| ||| ||| |||||| |||||| |||| |
Sbjct: 1 cctgcgctgacaagtacgctcaggagagtgcggcgctcgcctgcgacgcgtacaagggcg 60
Query: 145 tcgaccaagactccaccttggaagatgactacttcttcgccgcgctgccggtggttcaga 204
|| | || ||||||||||| | |||||| |||| || ||| ||||||||||| ||| |||
Sbjct: 61 tcaagcaggactccaccttaggagatgagtactactccgcggcgctgccggtcgttgaga 120
Query: 205 agaggatcgcgcaagggggcgtcaggctggccgcgatcctcaacaggat 253
|||||||||| || || |||||||||||||| || ||||||||| ||||
Sbjct: 121 agaggatcgctcagggcggcgtcaggctggcggccatcctcaaccggat 169
>gb|AJ613122.1|AJ613122 AJ613122 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 08313R, mRNA
sequence
Length = 699
Score = 97.6 bits (49), Expect = 7e-019
Identities = 118/141 (83%)
Strand = Plus / Plus
Query: 108 gagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttggaa 167
||||||||| |||||||||| ||||||||||| ||||| || ||| |||| | | |
Sbjct: 388 gagagcgcggtgctggcctgcgacgcgtacgagggcgtcgagcaggacgacaccctagga 447
Query: 168 gatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgtc 227
||||| |||| |||| |||||||||||||||||||||||| |||| || ||||||||
Sbjct: 448 gatgagtactacttcaaggcgctgccggtggttcagaagaggctcgcccaggggggcgtg 507
Query: 228 aggctggccgcgatcctcaac 248
|||||||| ||||||||||||
Sbjct: 508 aggctggcggcgatcctcaac 528
>gb|BE444988.1|BE444988 WHE1130_B07_C14ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1130_B07_C14,
mRNA sequence
Length = 576
Score = 83.8 bits (42), Expect = 1e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaagatgactacttcttcgccgcgctg 191
||||||||||| ||||| || ||| |||| | | |||||| |||| |||| ||||||
Sbjct: 319 gcgtacgagggcgtcgagcaggacgacaccctaggagatgagtactacttcaaggcgctg 378
Query: 192 ccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcctcaacagg 251
||||| |||||||||||| |||| || |||||||| |||||||| |||||||||||| ||
Sbjct: 379 ccggtcgttcagaagaggctcgcccaggggggcgtgaggctggcggcgatcctcaaccgg 438
Query: 252 at 253
||
Sbjct: 439 at 440
>gb|CD874917.1|CD874917 AZO3.103L02R011123 AZO3 Triticum aestivum cDNA clone AZO3103L02,
mRNA sequence
Length = 672
Score = 83.8 bits (42), Expect = 1e-014
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaagatgactacttcttcgccgcgctg 191
||||||||||| ||||| || ||| |||| | | |||||| |||| |||| ||||||
Sbjct: 431 gcgtacgagggcgtcgagcaggacgacaccctaggagatgagtactacttcaaggcgctg 372
Query: 192 ccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcctcaacagg 251
||||| |||||||||||| |||| || |||||||| |||||||| |||||||||||| ||
Sbjct: 371 ccggtcgttcagaagaggctcgcccaggggggcgtgaggctggcggcgatcctcaaccgg 312
Query: 252 at 253
||
Sbjct: 311 at 310
>gb|BJ283684.1|BJ283684 BJ283684 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr17b08 3', mRNA sequence
Length = 694
Score = 81.8 bits (41), Expect = 4e-014
Identities = 167/209 (79%)
Strand = Plus / Minus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||||| ||||| ||| || | |||||| ||||| ||||||||
Sbjct: 471 gaggagaagcagtgggaggcgtgccgcagcaaaaccacgacctgcgctgaaaagtacgcc 412
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
||||||||| |||||| ||| ||||||||||| ||||| || ||| |||| |
Sbjct: 411 caggagagcgcgttgctggcatgcgacgcgtacgagggcgtcgagcaggacgacacccta 352
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
| ||| || |||| |||| ||||| |||||||||||||||||| |||| || || |||
Sbjct: 351 ggagacgagtactacttcaaggcgctaccggtggttcagaagaggctcgcccagggaggc 292
Query: 225 gtcaggctggccgcgatcctcaacaggat 253
|| |||||||| |||||||||||| ||||
Sbjct: 291 gtgaggctggcggcgatcctcaaccggat 263
>gb|BQ901428.1|BQ901428 Ta02_19e12_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_19e12, mRNA
sequence
Length = 359
Score = 75.8 bits (38), Expect = 3e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 108 gagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttggaa 167
||||||||| ||||| | ||| |||| |||| |||||| | ||| |||||| ||| |||
Sbjct: 351 gagagcgcggagctgtcgtgcccggcttacgtgggtgttgggcaatactccaacttagaa 292
Query: 168 gatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgtc 227
||||| || |||||| | ||| ||||||| ||| |||||||||| || || || || |||
Sbjct: 291 gatgaatatttcttcccggcgatgccggttgttgagaagaggattgcccagggaggtgtc 232
Query: 228 aggctggccgcgatcctcaacaggat 253
|||||||| || ||||||||| ||||
Sbjct: 231 aggctggcggccatcctcaaccggat 206
>gb|BE430303.1|BE430303 SUN001.D07R991203 ITEC SUN Wheat cDNA Library Triticum aestivum
cDNA clone SUN001.D07, mRNA sequence
Length = 378
Score = 69.9 bits (35), Expect = 2e-010
Identities = 122/150 (81%), Gaps = 2/150 (1%)
Strand = Plus / Minus
Query: 119 gctggcctgcacggcgtacgagggtgtcgaccaagactccaccttggaagatgactactt 178
|||||||||| ||||||||||| ||||| || ||| |||| | | |||||| ||||
Sbjct: 376 gctggcctgcgacgcgtacgagggcgtcgagcaggacgacaccctaggagatgagtacta 317
Query: 179 cttcgccgcgctgccggtggttcagaagaggatcgcgcaa--gggggcgtcaggctggcc 236
|||| |||||||||||||||||||||||| | || | | |||||||| ||||||||
Sbjct: 316 cttcaaggcgctgccggtggttcagaagaggcttgccccacggggggcgtgaggctggcg 257
Query: 237 gcgatcctcaacaggatatttggtgggaac 266
|||||||||||| |||| || || ||||||
Sbjct: 256 gcgatcctcaaccggatcttcggcgggaac 227
>gb|BE444298.1|BE444298 WHE1117_E07_I13ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1117_E07_I13,
mRNA sequence
Length = 513
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 186 gcgctgccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcct 244
||||||||||| || ||||||||||||| || |||||||| |||||||| | ||||||
Sbjct: 266 gcgctgccggttgtcgagaagaggatcgctcaggggggcgtgaggctggcggtgatcct 324
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacggaggagtgggctgatgaggagaagaagtgggaggcctg 67
||||||||||| |||||||| ||||||||| | ||||||||| |||||||||||||
Sbjct: 85 ggccatccagcgcaacatcaccgaggagtggtccagcgaggagaagcagtgggaggcctg 144
Query: 68 c 68
|
Sbjct: 145 c 145
>gb|BE445734.1|BE445734 WHE1453_B10_D19ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1453_B10_D19,
mRNA sequence
Length = 542
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 186 gcgctgccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcct 244
||||||||||| || ||||||||||||| || |||||||| |||||||| | ||||||
Sbjct: 266 gcgctgccggttgtcgagaagaggatcgctcaggggggcgtgaggctggcggtgatcct 324
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacggaggagtgggctgatgaggagaagaagtgggaggcctg 67
||||||||||| |||||||| ||||||||| | ||||||||| |||||||||||||
Sbjct: 85 ggccatccagcgcaacatcaccgaggagtggtccagcgaggagaagcagtgggaggcctg 144
Query: 68 c 68
|
Sbjct: 145 c 145
>gb|CD906744.1|CD906744 G468.105G18F011012 G468 Triticum aestivum cDNA clone G468105G18,
mRNA sequence
Length = 713
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacggaggagtgggctgatgaggagaagaagtgggaggcctg 67
||||||||||| |||||||| ||||||||| | ||||||||| |||||||||||||
Sbjct: 565 ggccatccagcgcaacatcaccgaggagtggtccagcgaggagaagcagtgggaggcctg 624
Query: 68 c 68
|
Sbjct: 625 c 625
>gb|CK161699.1|CK161699 FGAS014271 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1133
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacggaggagtgggctgatgaggagaagaagtgggaggcctg 67
||||||||||| |||||||| ||||||||| | ||||||||| |||||||||||||
Sbjct: 664 ggccatccagcgcaacatcaccgaggagtggtccagcgaggagaagcagtgggaggcctg 723
Query: 68 c 68
|
Sbjct: 724 c 724
>gb|CW511884.1|CW511884 Shotgun_P23_082.g1_Ta004 Triticum aestivum Shotgun Triticum
aestivum genomic, DNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 gtgtcgaccaagactccacc 161
||||||||||||||||||||
Sbjct: 287 gtgtcgaccaagactccacc 268
>gb|CA664135.1|CA664135 wlmk1.pk036.d11 wlmk1 Triticum aestivum cDNA clone wlmk1.pk036.d11
5' end, mRNA sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgc 68
||||||||| ||||||||||||||
Sbjct: 224 gaggagaagcagtgggaggcctgc 247
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,693
Number of Sequences: 636343
Number of extensions: 107693
Number of successful extensions: 33036
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33006
Number of HSP's gapped (non-prelim): 22
length of query: 529
length of database: 367,240,239
effective HSP length: 19
effective length of query: 510
effective length of database: 355,149,722
effective search space: 181126358220
effective search space used: 181126358220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)