BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763110.2.1
(541 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD885654.1|CD885654 G118.100A15R010921 G118 Triticum aes... 109 2e-022
gb|CK194849.1|CK194849 FGAS003282 Triticum aestivum FGAS: L... 109 2e-022
gb|CD881934.1|CD881934 F1.104M13R010628 F1 Triticum aestivu... 46 0.002
gb|CD923274.1|CD923274 G750.107J06F010529 G750 Triticum aes... 46 0.002
gb|CD869698.1|CD869698 AZO2.112F15F001117 AZO2 Triticum aes... 44 0.010
gb|CD869699.1|CD869699 AZO2.112F15R010521 AZO2 Triticum aes... 44 0.010
gb|CD874668.1|CD874668 AZO3.102M03R011123 AZO3 Triticum aes... 44 0.010
gb|BJ261664.1|BJ261664 BJ261664 Y. Ogihara unpublished cDNA... 42 0.039
gb|CA688274.1|CA688274 wlm96.pk039.h9 wlm96 Triticum aestiv... 40 0.15
gb|CD923504.1|CD923504 G750.108M09F010531 G750 Triticum aes... 40 0.15
gb|CN008023.1|CN008023 WHE2636_D02_H04ZE Wheat Fusarium gra... 40 0.15
>gb|CD885654.1|CD885654 G118.100A15R010921 G118 Triticum aestivum cDNA clone G118100A15,
mRNA sequence
Length = 650
Score = 109 bits (55), Expect = 2e-022
Identities = 136/163 (83%)
Strand = Plus / Minus
Query: 221 gagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgtcgcc 280
|||||||| ||||| || || || |||||| | |||||||||||||||||||| || |||
Sbjct: 282 gagctccttccgtttgggtcggggcgaagggcttgccctgccatcgccatgggcgtggcc 223
Query: 281 aatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctgaaggg 340
||||||||| | || ||||||| ||||| | ||||| || ||| |||| || || |||
Sbjct: 222 aatgtggaggtcgtgctggccaatctgttgtactgcttcgactgggagcttcccgagggg 163
Query: 341 atggtggaggaggacatcgatatggaagaaacagggcagcttg 383
||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 162 atgaaggaggacgacatcgatatggaggaaacagggcagcttg 120
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 6 aggagaacttcaggatccacccaccggggaccttgttgattccacgggagaccatgagga 65
|||||||||||||| | |||||||||||||| || |||||||| |||| |||||| ||
Sbjct: 497 aggagaacttcaggttgcacccaccggggactctgctgattccaagggaaaccatgcaga 438
Query: 66 gctgcg 71
||||||
Sbjct: 437 gctgcg 432
>gb|CK194849.1|CK194849 FGAS003282 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 109 bits (55), Expect = 2e-022
Identities = 136/163 (83%)
Strand = Plus / Minus
Query: 221 gagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgtcgcc 280
|||||||| ||||| || || || |||||| | |||||||||||||||||||| || |||
Sbjct: 433 gagctccttccgtttgggtcggggcgaagggcttgccctgccatcgccatgggcgtggcc 374
Query: 281 aatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctgaaggg 340
||||||||| | || ||||||| ||||| | ||||| || ||| |||| || || |||
Sbjct: 373 aatgtggaggtcgtgctggccaatctgttgtactgcttcgactgggagcttcccgagggg 314
Query: 341 atggtggaggaggacatcgatatggaagaaacagggcagcttg 383
||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 313 atgaaggaggacgacatcgatatggaggaaacagggcagcttg 271
>gb|CD881934.1|CD881934 F1.104M13R010628 F1 Triticum aestivum cDNA clone F1104M13, mRNA
sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 276 tcgccaatgtggagcttgtcttggccaacct 306
||||||||||||||||| | |||||||||||
Sbjct: 276 tcgccaatgtggagcttatgttggccaacct 246
>gb|CD923274.1|CD923274 G750.107J06F010529 G750 Triticum aestivum cDNA clone G750107J06,
mRNA sequence
Length = 450
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 312 attgctttgattggcagctccctgaagggatggtggaggagga 354
|||||||||||||| ||||||| || |||||| |||||||||
Sbjct: 204 attgctttgattgggagctccccgatgggatgcgggaggagga 246
>gb|CD869698.1|CD869698 AZO2.112F15F001117 AZO2 Triticum aestivum cDNA clone AZO2112F15,
mRNA sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 101 acaaggattttcgtgaacgtttgggcaatgggaaggga 138
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 506 acaaggatcttcgtgaacgtgtgggccatggggaggga 543
>gb|CD869699.1|CD869699 AZO2.112F15R010521 AZO2 Triticum aestivum cDNA clone AZO2112F15,
mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 101 acaaggattttcgtgaacgtttgggcaatgggaaggga 138
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 403 acaaggatcttcgtgaacgtgtgggccatggggaggga 366
>gb|CD874668.1|CD874668 AZO3.102M03R011123 AZO3 Triticum aestivum cDNA clone AZO3102M03,
mRNA sequence
Length = 581
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 159 cggaggagttcagtcccgagaggttcgagg 188
||||||||||||| || |||||||||||||
Sbjct: 414 cggaggagttcaggccggagaggttcgagg 385
>gb|BJ261664.1|BJ261664 BJ261664 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh4b07 3', mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 163 ggagttcagtcccgagaggttcgag 187
||||||||| |||||||||||||||
Sbjct: 599 ggagttcaggcccgagaggttcgag 575
>gb|CA688274.1|CA688274 wlm96.pk039.h9 wlm96 Triticum aestivum cDNA clone wlm96.pk039.h9 5'
end, mRNA sequence
Length = 481
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gaggagttcagtcccgagaggttcgagg 188
||||||||||| ||||||||||| ||||
Sbjct: 49 gaggagttcaggcccgagaggtttgagg 76
>gb|CD923504.1|CD923504 G750.108M09F010531 G750 Triticum aestivum cDNA clone G750108M09,
mRNA sequence
Length = 501
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 312 attgctttgattggcagctccctgaagggatg 343
|||||||||||||| ||||||| || ||||||
Sbjct: 454 attgctttgattgggagctccccgatgggatg 485
>gb|CN008023.1|CN008023 WHE2636_D02_H04ZE Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2636_D02_H04,
mRNA sequence
Length = 363
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 335 gaagggatggtggaggagga 354
||||||||||||||||||||
Sbjct: 68 gaagggatggtggaggagga 49
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,698
Number of Sequences: 636343
Number of extensions: 108698
Number of successful extensions: 30986
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30969
Number of HSP's gapped (non-prelim): 17
length of query: 541
length of database: 367,240,239
effective HSP length: 19
effective length of query: 522
effective length of database: 355,149,722
effective search space: 185388154884
effective search space used: 185388154884
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)