BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV763657.1|CV763657 FGAS058040 Triticum aestivum FGAS: L... 198 4e-049
gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA... 196 2e-048
gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivu... 147 1e-033
gb|BJ208137.1|BJ208137 BJ208137 Y. Ogihara unpublished cDNA... 76 4e-012
gb|AL812363.1|AL812363 AL812363 e:310 Triticum aestivum cDN... 76 4e-012
gb|AL812716.1|AL812716 AL812716 e:310 Triticum aestivum cDN... 64 2e-008
gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA... 54 2e-005
gb|CF133075.1|CF133075 WHE4353_G03_N05ZT Wheat meiotic flor... 46 0.004
gb|BQ237660.1|BQ237660 TaE05014A01F TaE05 Triticum aestivum... 42 0.059
gb|CA741910.1|CA741910 wia1c.pk002.i8 wia1c Triticum aestiv... 40 0.23
>gb|CV763657.1|CV763657 FGAS058040 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 853
Score = 198 bits (100), Expect = 4e-049
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 367 gggtacctgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgcgactcggac 426
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 410 gggtacctgtcgtgcggcaccgggaaccccatcgacgactgctggcgctgcgactcggac 469
Query: 427 tggcacaacaaccggaagcgcctcgccgactgtggcatcggctttggccgcaacgccatc 486
||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 470 tggcacaacaaccggcagcgcctggccgactgcggcatcggcttcggccgcaacgccatc 529
Query: 487 ggcggccg 494
||||||||
Sbjct: 530 ggcggccg 537
>gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA clone B01_a11_plate_16, mRNA
sequence
Length = 240
Score = 196 bits (99), Expect = 2e-048
Identities = 208/239 (87%), Gaps = 4/239 (1%)
Strand = Plus / Plus
Query: 443 agcgcctcgccgactgtg-gcatcggctttggccgcaacgccatcggcg-gcc-gtgacg 499
|||| ||||||||||| | |||||||||| ||||||||||||||||||| ||| | ||||
Sbjct: 2 agcggctcgccgactgcgtgcatcggcttcggccgcaacgccatcggcgtgcctgcgacg 61
Query: 500 -gcaagatctacgtggtcaccgacccgagcgatgacgaccctgtcaacccgcgcaagggc 558
||||||||||||||||||||||| || |||| |||||||| || ||||| ||||||
Sbjct: 62 tgcaagatctacgtggtcaccgacgcgggcgacgacgaccccgtgaaccccaagaagggc 121
Query: 559 accctccgctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggacatg 618
||||| || ||||||||||||| || |||||||| |||||| |||||||||| ||||||
Sbjct: 122 accctgcggcacgccgtcatccaggacgagccgctgtggatcgtcttcaagcgcgacatg 181
Query: 619 gtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggacgcgg 677
|||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 182 gtcatcacactcagccaggagctcatcgtgaacagcttcaagaccatcgacgggcgcgg 240
>gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivum cDNA clone OV110G14, mRNA
sequence
Length = 708
Score = 147 bits (74), Expect = 1e-033
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 706 tgcatcaccatccagtacatcaccaacgtcatcatccacgggctccacatccacgactgc 765
|||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||
Sbjct: 5 tgcatcaccatccagtacgtcaccaacgtgatcatccatggtctccacatccacgactgc 64
Query: 766 aagcccacggggaacgccatggtgcgcagctcgcccagccactatgggtggcgc 819
||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 65 cgccccaccggcaacgccatggtgcgcagctcgcccagccactacgggtggcgc 118
>gb|BJ208137.1|BJ208137 BJ208137 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6p12 5', mRNA sequence
Length = 585
Score = 75.8 bits (38), Expect = 4e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 778 aacgccatggtgcgcagctcgcccagccactatgggtggcgc 819
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9 aacgccatggtgcgcagctcgcccagccactacgggtggcgc 50
>gb|AL812363.1|AL812363 AL812363 e:310 Triticum aestivum cDNA clone A04_e310_plate_3, mRNA
sequence
Length = 529
Score = 75.8 bits (38), Expect = 4e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 778 aacgccatggtgcgcagctcgcccagccactatgggtggcgc 819
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6 aacgccatggtgcgcagctcgcccagccactacgggtggcgc 47
>gb|AL812716.1|AL812716 AL812716 e:310 Triticum aestivum cDNA clone H11_e310_plate_7, mRNA
sequence
Length = 540
Score = 63.9 bits (32), Expect = 2e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 778 aacgccatggtgcgcagctcgcccagccacta 809
||||||||||||||||||||||||||||||||
Sbjct: 5 aacgccatggtgcgcagctcgcccagccacta 36
>gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA clone D07_e29_plate_1, mRNA
sequence
Length = 688
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatc 693
||||||||||| |||||||| |||||| |||||||| |||||||| | |||||||||
Sbjct: 129 aggagctcatcgtgaacagcaacaagacgatcgacgggcgcggcgcgcaggtgcacatc 187
>gb|CF133075.1|CF133075 WHE4353_G03_N05ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4353_G03_N05, mRNA sequence
Length = 670
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 388 ggcaaccccatcgacgactgctggcgctgcg 418
|||||||| ||||||||||||||||| ||||
Sbjct: 463 ggcaacccgatcgacgactgctggcggtgcg 493
>gb|BQ237660.1|BQ237660 TaE05014A01F TaE05 Triticum aestivum cDNA clone TaE05014A01F, mRNA
sequence
Length = 377
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 611 gggacatggtcatcacgctcaagga 635
||||||| |||||||||||||||||
Sbjct: 246 gggacatcgtcatcacgctcaagga 222
>gb|CA741910.1|CA741910 wia1c.pk002.i8 wia1c Triticum aestivum cDNA clone wia1c.pk002.i8 5'
end, mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.23
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatca 625
|||||||| |||||||||||| | |||||||||| ||||
Sbjct: 465 gagccgctgtggatcatcttcgcgagggacatggtgatca 504
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,231
Number of Sequences: 636343
Number of extensions: 176231
Number of successful extensions: 49690
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49670
Number of HSP's gapped (non-prelim): 18
length of query: 819
length of database: 367,240,239
effective HSP length: 19
effective length of query: 800
effective length of database: 355,149,722
effective search space: 284119777600
effective search space used: 284119777600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)