BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA497106.1|CA497106 WHE3223_B08_D15ZT Wheat meiotic anth... 86 4e-015
gb|CD926079.1|CD926079 G750.120B01F010711 G750 Triticum aes... 64 1e-008
gb|CA728774.1|CA728774 wdi1c.pk005.b12 wdi1c Triticum aesti... 62 5e-008
gb|CD865759.1|CD865759 AZO2.101L07F010111 AZO2 Triticum aes... 60 2e-007
gb|CK161568.1|CK161568 FGAS014139 Triticum aestivum FGAS: L... 56 3e-006
gb|BQ169238.1|BQ169238 WHE2166_A09_B18ZT Triticum turgidum ... 52 5e-005
gb|BJ303602.1|BJ303602 BJ303602 Y. Ogihara unpublished cDNA... 44 0.012
gb|BJ303630.1|BJ303630 BJ303630 Y. Ogihara unpublished cDNA... 44 0.012
gb|CK208842.1|CK208842 FGAS020564 Triticum aestivum FGAS: L... 44 0.012
gb|BF478821.1|BF478821 WHE2014_A10_A20ZS Chinese Spring whe... 40 0.19
gb|CA655467.1|CA655467 wlm0.pk0013.f6 wlm0 Triticum aestivu... 40 0.19
gb|CD876712.1|CD876712 AZO3.110K17F011010 AZO3 Triticum aes... 40 0.19
gb|CK210834.1|CK210834 FGAS022661 Triticum aestivum FGAS: L... 40 0.19
gb|CV767819.1|CV767819 FGAS062210 Triticum aestivum FGAS: L... 40 0.19
>gb|CA497106.1|CA497106 WHE3223_B08_D15ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3223_B08_D15, mRNA sequence
Length = 425
Score = 85.7 bits (43), Expect = 4e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| |||| ||||| ||||| |||||||||||||| |||||||| |
Sbjct: 261 attccttttgcaagacactgacagcttcggatacgagtacccatggtggtttctctgttc 320
Query: 640 tcaggaggcatgctgaaga 658
| |||||||||||||||||
Sbjct: 321 ttaggaggcatgctgaaga 339
Score = 71.9 bits (36), Expect = 5e-011
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagatcaaagtgagc 531
||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||||
Sbjct: 153 ctgattcagatgaagtttacgctcaaattatgctgcaaccagaggctaatcaaggtgagc 212
>gb|CD926079.1|CD926079 G750.120B01F010711 G750 Triticum aestivum cDNA clone G750120B01,
mRNA sequence
Length = 558
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaagg 328
||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct: 483 tggcatgcttgggctaggccgttgatcacagtgcctcgccaagg 440
>gb|CA728774.1|CA728774 wdi1c.pk005.b12 wdi1c Triticum aestivum cDNA clone wdi1c.pk005.b12
5' end, mRNA sequence
Length = 615
Score = 61.9 bits (31), Expect = 5e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
|||||||||||||| || ||| || ||||||| || | |||||||| | || || |||
Sbjct: 418 tggcatgcttgtgccggtccgctgatcacagtacccagacaaggcgaacgagtctattac 477
Query: 345 ttcccacagggtcatatggaacagcttgaagcatctaca 383
|| || ||||||||||||||||||||||| || ||||||
Sbjct: 478 tttccccagggtcatatggaacagcttgaggcgtctaca 516
>gb|CD865759.1|CD865759 AZO2.101L07F010111 AZO2 Triticum aestivum cDNA clone AZO2101L07,
mRNA sequence
Length = 589
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 609 gatacaagtacccatggtggattctctgtcctcaggaggcatgctgaaga 658
||||||||||||| |||||| |||||||| || ||||| |||||||||||
Sbjct: 248 gatacaagtacccgtggtggtttctctgttcttaggagacatgctgaaga 297
>gb|CK161568.1|CK161568 FGAS014139 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1072
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaagg 328
||||||||||| ||| |||||||| |||||||||||| ||||||
Sbjct: 840 tggcatgcttgggctaggccgttgatcacagtgcctcaccaagg 883
>gb|BQ169238.1|BQ169238 WHE2166_A09_B18ZT Triticum turgidum L. var. durum (durum wheat)
whole plant cDNA library Triticum turgidum cDNA clone
WHE2166_A09_B18, mRNA sequence
Length = 655
Score = 52.0 bits (26), Expect = 5e-005
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 609 gatacaagtacccatggtggattctctgtcctcaggaggcatgctgaaga 658
||||||||||||| |||||| |||||||| || ||||| |||||||||||
Sbjct: 434 gatacaagtacccgtggtgg-ttctctgttcttaggagacatgctgaaga 386
>gb|BJ303602.1|BJ303602 BJ303602 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd20f11 5', mRNA sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.012
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 584 cttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||||||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 232 cttctgcaagactttgactgcaagtgatacaagtacacatggcggattttctgt 285
>gb|BJ303630.1|BJ303630 BJ303630 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd20h09 5', mRNA sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.012
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 584 cttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||||||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 231 cttctgcaagactttgactgcaagtgatacaagtacacatggcggattttctgt 284
>gb|CK208842.1|CK208842 FGAS020564 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1112
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 303 ccgttggtcacagtgcctcgccaagg 328
|||||| |||||||||||||||||||
Sbjct: 831 ccgttgatcacagtgcctcgccaagg 806
>gb|BF478821.1|BF478821 WHE2014_A10_A20ZS Chinese Spring wheat drought stressed leaf cDNA
library Triticum aestivum cDNA clone WHE2014_A10_A20,
mRNA sequence
Length = 115
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 219 gagatggcgagcgccggcgtggcg 242
||||||||||||||||||| ||||
Sbjct: 14 gagatggcgagcgccggcgcggcg 37
>gb|CA655467.1|CA655467 wlm0.pk0013.f6 wlm0 Triticum aestivum cDNA clone wlm0.pk0013.f6 5'
end, mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 219 gagatggcgagcgccggcgtggcg 242
||||||||||||||||||| ||||
Sbjct: 82 gagatggcgagcgccggcgcggcg 105
>gb|CD876712.1|CD876712 AZO3.110K17F011010 AZO3 Triticum aestivum cDNA clone AZO3110K17,
mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 219 gagatggcgagcgccggcgtggcg 242
||||||||||||||||||| ||||
Sbjct: 96 gagatggcgagcgccggcgcggcg 119
>gb|CK210834.1|CK210834 FGAS022661 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1163
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 219 gagatggcgagcgccggcgtggcg 242
||||||||||||||||||| ||||
Sbjct: 148 gagatggcgagcgccggcgcggcg 171
>gb|CV767819.1|CV767819 FGAS062210 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 219 gagatggcgagcgccggcgtggcg 242
||||||||||||||||||| ||||
Sbjct: 189 gagatggcgagcgccggcgcggcg 212
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 188,926
Number of Sequences: 636343
Number of extensions: 188926
Number of successful extensions: 69884
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69864
Number of HSP's gapped (non-prelim): 22
length of query: 660
length of database: 367,240,239
effective HSP length: 19
effective length of query: 641
effective length of database: 355,149,722
effective search space: 227650971802
effective search space used: 227650971802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)