BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647917.2.1
(3189 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ801538.1|BQ801538 WHE2815_E09_J17ZS Triticum monococcu... 398 e-109
gb|CK210671.1|CK210671 FGAS022495 Triticum aestivum FGAS: L... 319 7e-085
gb|CA600668.1|CA600668 waw1c.pk005.o10 waw1c Triticum aesti... 50 0.001
gb|CA679352.1|CA679352 wlm4.pk0020.h6 wlm4 Triticum aestivu... 50 0.001
gb|BF478445.1|BF478445 WHE2002_E01_I02ZS Chinese Spring whe... 46 0.015
gb|CA640617.1|CA640617 wre1n.pk0038.g11 wre1n Triticum aest... 46 0.015
gb|CD872242.1|CD872242 AZO2.120C22F010209 AZO2 Triticum aes... 46 0.015
gb|BE497603.1|BE497603 WHE0754_D04_H08ZS Wheat heat-stresse... 44 0.059
gb|BF202207.1|BF202207 WHE1778_H09_O17ZS Wheat pre-anthesis... 44 0.059
gb|AL826423.1|AL826423 AL826423 p:537 Triticum aestivum cDN... 44 0.059
gb|CD877242.1|CD877242 AZO4.004B08F010504 AZO4 Triticum aes... 44 0.059
gb|DR741630.1|DR741630 FGAS030682 Triticum aestivum FGAS: L... 44 0.059
gb|BM135291.1|BM135291 WHE0498_C03_F06ZS Wheat Fusarium gra... 42 0.23
gb|AL823311.1|AL823311 AL823311 p:133 Triticum aestivum cDN... 42 0.23
>gb|BQ801538.1|BQ801538 WHE2815_E09_J17ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2815_E09_J17, mRNA
sequence
Length = 708
Score = 398 bits (201), Expect = e-109
Identities = 525/633 (82%)
Strand = Plus / Minus
Query: 1735 gacagcaaagacaatctctgcaacaaagatgcgcatctgaaaagccatcaacttgcggct 1794
||||||||| |||||||||| ||||| ||||||||||||||| |||| |||| || |
Sbjct: 655 gacagcaaatgcaatctctgccacaaaaatgcgcatctgaaaatccattgacttatggtt 596
Query: 1795 cttggtccgcttctgtgataagcagaatgacaggcactcatctgtgacacacttcaagca 1854
|||||| ||||| | ||| |||| |||||| |||||||||| ||||||| || ||||
Sbjct: 595 gttggtctgcttccgggatgtgcagtatgacaaacactcatctgagacacacctcgagca 536
Query: 1855 atcaaactggcaaacacggtcagctgttgcattgcaaggagatgactcatacaagccttc 1914
||| |||||||| ||||||||||| || |||||||| || || ||||||||| || ||
Sbjct: 535 atcgaactggcacacacggtcagccgtggcattgcagggtgaggactcatacgagttgtc 476
Query: 1915 cgggcaacctgtactacagggcaagcagagtctagagtttgcaggcttacacaccttgat 1974
||||| || | ||| |||||||||||||||||||||||| ||||||| || |||| |
Sbjct: 475 tgggcagccagcactgcagggcaagcagagtctagagtttccaggcttgcaagacttgct 416
Query: 1975 gctgccaacttcaccatggttcacatattcatagtacccatggctgcatgcagtaggtac 2034
|| |||| ||||||||||| ||||| || ||||| || |||||||||||| || |||
Sbjct: 415 gccaccaagctcaccatggttaacatactcgtagtatccggggctgcatgcagaagatac 356
Query: 2035 acaaatcccaggaggtacggccatgggtaatgccaatggcccactgttgccccagcacct 2094
||||||||| || | ||| ||||| |||| ||||||||||||||| |||||||| |||||
Sbjct: 355 acaaatcccgggcgataccgccattggtagtgccaatggcccactattgccccaacacct 296
Query: 2095 cggcatcagcgaagtctcagcaggcactccacaagtgaagtaatccccagccacaagagc 2154
||| ||| ||| |||||||||||||| |||||||| ||||| || |||||||| | |
Sbjct: 295 tggcttcatcgatgtctcagcaggcacaccacaagtaaagtagtctccagccactattgt 236
Query: 2155 atacatcttcagcccttttggtggcgatgtactgttatgaagagtgaagccccagcaagc 2214
||||| | | || ||||| |||| ||||||||||| ||||| ||| |||||||||||
Sbjct: 235 atacaacctgagacctttgggtgctgatgtactgttctgaagttggaaaccccagcaagc 176
Query: 2215 cacttggtggtcaaggctcctgatgccacaagcatggaaccgcccgccaaccacagtgct 2274
|||||||| ||||||||||||||||||||||||||||| || ||||| || || | |
Sbjct: 175 tacttggtgatcaaggctcctgatgccacaagcatggaatcgtccgcccacaacggagac 116
Query: 2275 cattgcatccatcggcactatgttcacatcaccatcaccgatagcactggatggcaccac 2334
|||||||||||||||||||||| ||||||| || ||||||||||||| || ||| |||
Sbjct: 115 cattgcatccatcggcactatgctcacatcgccttcaccgatagcaccggtaggcgacac 56
Query: 2335 ctgctgcatctccaagctcctgccccagcagaa 2367
|||||||| |||||||||||| |||||||||||
Sbjct: 55 ctgctgcacctccaagctccttccccagcagaa 23
>gb|CK210671.1|CK210671 FGAS022495 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1131
Score = 319 bits (161), Expect = 7e-085
Identities = 388/463 (83%), Gaps = 3/463 (0%)
Strand = Plus / Minus
Query: 322 atttcttcagaagttgtgctgcaagtacaggttctcttgtggtgaagctggagcgatttc 381
||||| ||||||||||||||||||||||| || || ||||| || || || | || ||
Sbjct: 491 atttcatcagaagttgtgctgcaagtacaagtcttcctgtggcgacgccggcccaatctc 432
Query: 382 ttcctccagtgaccgcagtccgtcacctatgctgctcccgacgttcctgccgtctgtggc 441
|||||||| ||||||||| || || ||||||||||||||||||||||| || |||||||
Sbjct: 431 ttcctccaatgaccgcagaccatctcctatgctgctcccgacgttcctcccatctgtggt 372
Query: 442 ccttcgaccaacgatgtcagcttcggatgcagatgatttcctcctctgtgatgaggtcac 501
|||| ||| | | ||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 371 tgttcggccatccaggtcggcttccgacgctgacgatttcctcctctgcgatgaggtcac 312
Query: 502 gctaggaaaagttatccaggaaggtgccctgtacccgatcccctggtcctccccgtcagc 561
||| ||||| |||||||| || |||||||||||| |||||| |||||| ||||| ||| |
Sbjct: 311 gcttggaaacgttatccaagatggtgccctgtactcgatccgctggtcgtccccatcaac 252
Query: 562 aagctcgttctctgagcaggagtggttagaggacatctgtgacacctt---gtgcatgcg 618
||||| ||||||||||| || || ||||| ||| ||||||| ||||| |||||| ||
Sbjct: 251 gagctcattctctgagcacgactgattagatgacctctgtgatacctttttgtgcatccg 192
Query: 619 gctgcttccaagaacaacctcggtcggtagaatgggctgctcgatgcaggggctgcccat 678
||| || || |||||||| || || || |||||||| ||||| | ||| |||||||||||
Sbjct: 191 gctactcccgagaacaacttcagttggcagaatgggttgctccaggcatgggctgcccat 132
Query: 679 cagcagtgcaagggcgtgctctagagctgtcgtcaccttatccatggaaggccgatcttt 738
|||||| ||||| ||| ||||||||| ||| |||||||| |||||||||||||| |||||
Sbjct: 131 cagcagcgcaagtgcgcgctctagagatgttgtcaccttgtccatggaaggccggtcttt 72
Query: 739 acctcgcattctgacacacttacatgccacagaagcaatcttc 781
||||||||||| |||||||| |||||||||| |||||||||
Sbjct: 71 gcctcgcattctcacacacttgcatgccacagctgcaatcttc 29
>gb|CA600668.1|CA600668 waw1c.pk005.o10 waw1c Triticum aestivum cDNA clone waw1c.pk005.o10
5' end, mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 929 aggagaacaaccccgaagctgtagacatc 957
|||||||| ||||||||||||||||||||
Sbjct: 375 aggagaacgaccccgaagctgtagacatc 347
>gb|CA679352.1|CA679352 wlm4.pk0020.h6 wlm4 Triticum aestivum cDNA clone wlm4.pk0020.h6 5'
end, mRNA sequence
Length = 598
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 322 atttcttcagaagttgtgctgcaagtaca 350
||||| |||||||||||||||||||||||
Sbjct: 423 atttcatcagaagttgtgctgcaagtaca 451
>gb|BF478445.1|BF478445 WHE2002_E01_I02ZS Chinese Spring wheat drought stressed leaf cDNA
library Triticum aestivum cDNA clone WHE2002_E01_I02,
mRNA sequence
Length = 627
Score = 46.1 bits (23), Expect = 0.015
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 923 atctccaggagaacaaccccgaagctgtagacatc 957
||||||||||| ||||| ||||||||||| |||||
Sbjct: 527 atctccaggaggacaacgccgaagctgtaaacatc 493
>gb|CA640617.1|CA640617 wre1n.pk0038.g11 wre1n Triticum aestivum cDNA clone wre1n.pk0038.g11
5' end, mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.015
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 988 gtactcagggtcaaggtagccaagagt 1014
|||||||||||| ||||||||||||||
Sbjct: 59 gtactcagggtcgaggtagccaagagt 33
>gb|CD872242.1|CD872242 AZO2.120C22F010209 AZO2 Triticum aestivum cDNA clone AZO2120C22, mRNA
sequence
Length = 687
Score = 46.1 bits (23), Expect = 0.015
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 988 gtactcagggtcaaggtagccaagagt 1014
|||||||||||| ||||||||||||||
Sbjct: 333 gtactcagggtcgaggtagccaagagt 307
>gb|BE497603.1|BE497603 WHE0754_D04_H08ZS Wheat heat-stressed seedling cDNA library Triticum
aestivum cDNA clone WHE0754_D04_H08, mRNA sequence
Length = 434
Score = 44.1 bits (22), Expect = 0.059
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1115 atgtttgacgacttgatgtcccggtgaattacaggagg 1152
|||||||||||||||| ||||||| ||| ||||||||
Sbjct: 43 atgtttgacgacttgaaatcccggtaaataacaggagg 6
>gb|BF202207.1|BF202207 WHE1778_H09_O17ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1778_H09_O17, mRNA sequence
Length = 206
Score = 44.1 bits (22), Expect = 0.059
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
||||||||| || |||||||||||||||||
Sbjct: 157 ctccaggagcaccaccccgaagctgtagac 128
>gb|AL826423.1|AL826423 AL826423 p:537 Triticum aestivum cDNA clone D05_p537_plate_2, mRNA
sequence
Length = 385
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 941 ccgaagctgtagacatcagatt 962
||||||||||||||||||||||
Sbjct: 167 ccgaagctgtagacatcagatt 146
>gb|CD877242.1|CD877242 AZO4.004B08F010504 AZO4 Triticum aestivum cDNA clone AZO4004B08,
mRNA sequence
Length = 467
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 932 agaacaaccccgaagctgtagacatc 957
||||||||||||||||| ||||||||
Sbjct: 396 agaacaaccccgaagctatagacatc 371
>gb|DR741630.1|DR741630 FGAS030682 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1058
Score = 44.1 bits (22), Expect = 0.059
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
||||||||| || |||||||||||||||||
Sbjct: 784 ctccaggagcaccaccccgaagctgtagac 755
>gb|BM135291.1|BM135291 WHE0498_C03_F06ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE0498_C03_F06,
mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.23
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagacatc 957
||||||||| || || |||||||||||||||||
Sbjct: 327 ctccaggagcaccacaccgaagctgtagacatc 295
>gb|AL823311.1|AL823311 AL823311 p:133 Triticum aestivum cDNA clone D07_p133_plate_2, mRNA
sequence
Length = 356
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2842 gtacaggacagatgcatcagc 2862
|||||||||||||||||||||
Sbjct: 142 gtacaggacagatgcatcagc 122
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 602,212
Number of Sequences: 636343
Number of extensions: 602212
Number of successful extensions: 157143
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 157119
Number of HSP's gapped (non-prelim): 17
length of query: 3189
length of database: 367,240,239
effective HSP length: 20
effective length of query: 3169
effective length of database: 354,513,379
effective search space: 1123452898051
effective search space used: 1123452898051
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)