BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA624020.1|CA624020 wl1n.pk0113.f4 wl1n Triticum aestivu... 432 e-119
gb|BQ804514.1|BQ804514 WHE3555_E11_I21ZS Wheat developing g... 220 2e-055
gb|BQ161001.1|BQ161001 WHE1061_H06_P11ZT Wheat unstressed s... 192 4e-047
gb|CK208347.1|CK208347 FGAS020054 Triticum aestivum FGAS: L... 184 9e-045
gb|BF200874.1|BF200874 WHE0821-0824_H20_H20ZS Wheat vernali... 113 3e-023
gb|BI750545.1|BI750545 Ta01_06d04_R Ta01_AAFC_ECORC_Fusariu... 42 0.086
gb|CD878047.1|CD878047 AZO4.101M15F011002 AZO4 Triticum aes... 42 0.086
gb|AJ615116.1|AJ615116 AJ615116 Triticum turgidum subsp. du... 42 0.086
gb|BQ240401.1|BQ240401 TaE05018A07R TaE05 Triticum aestivum... 40 0.34
gb|CD868918.1|CD868918 AZO2.110C24F001114 AZO2 Triticum aes... 40 0.34
>gb|CA624020.1|CA624020 wl1n.pk0113.f4 wl1n Triticum aestivum cDNA clone wl1n.pk0113.f4 5'
end, mRNA sequence
Length = 562
Score = 432 bits (218), Expect = e-119
Identities = 342/372 (91%), Gaps = 9/372 (2%)
Strand = Plus / Minus
Query: 633 cgcccctgcctgtgttggtcttg-acatgga-tcccaaaccctgagttgaagaagttcaa 690
||||| ||| ||||||||||||| |||| || ||| ||||| |||||||||||| || ||
Sbjct: 367 cgcccttgcttgtgttggtcttggacattgaatccaaaaccttgagttgaagaa-ttaaa 309
Query: 691 gtgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagc 750
|||| ||||||||| ||| | ||||||| |||||||||||||||| ||| ||| |||||
Sbjct: 308 gtgt-ctgcaaggagtttc-caacgccacntgatgtctcgcttccggccgggaa-ccagc 252
Query: 751 aaacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggc 810
|||||||||||| ||||| | ||||||||||||||| || | ||| ||||||||||||
Sbjct: 251 aaacggggagga-cctgtaaaccgccgcacggtgatgcccagantggcgcggccataggc 193
Query: 811 g-attccatactcatccc-agccactcttgatggcgatggaatcgtcaccagtcgaaatg 868
| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 192 ggattccatactcatccccagccactcttgatggcgatggaatcgtcaccagtagaaatg 133
Query: 869 tagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttgggg 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttgggg 73
Query: 929 gagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaacagga 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaacagga 13
Query: 989 tggatgttccag 1000
||||||||||||
Sbjct: 12 tggatgttccag 1
>gb|BQ804514.1|BQ804514 WHE3555_E11_I21ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3555_E11_I21, mRNA sequence
Length = 633
Score = 220 bits (111), Expect = 2e-055
Identities = 321/391 (82%)
Strand = Plus / Minus
Query: 608 gagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgacatggatccca 667
||||| |||||||| | ||||| || |||||||| | ||||||||||| || | |||
Sbjct: 391 gagacggtgatgtttcgaatgaaccctcccctgccggagttggtcttgatgtgaacacca 332
Query: 668 aaccctgagttgaagaagttcaagtgttctgcaaggacgttctccacgccacctgatgtc 727
||||||||| || |||| |||| || || || ||||| |||||||| || || || |||
Sbjct: 331 aaccctgagctgtagaaattcagatgctcagcgaggacattctccacaccgccagaggtc 272
Query: 728 tcgcttccgaccgcgaagccagcaaacggggaggagcctgtgatccgccgcacggtgatt 787
|| || ||||| | ||||||||||| ||||||||||| |||||||||| | ||| ||
Sbjct: 271 tcactcccgacagaaaagccagcaaaaggggaggagcccgtgatccgcctaatggtaatg 212
Query: 788 ccagaactggggcggccataggcgattccatactcatcccagccactcttgatggcgatg 847
|| || |||||||| ||| | || || ||||| |||||||| |||||||||||||||||
Sbjct: 211 cccgagctggggcgaccacaagctatgccatattcatcccatccactcttgatggcgatc 152
Query: 848 gaatcgtcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctgga 907
|| || || ||||| |||| ||||||||| ||||| | |||||||| |||||||||
Sbjct: 151 aggtcatctcccgtcgagatgttgcaatcctcaatgcacacattgctgctcgaatctgga 92
Query: 908 tcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctgatcaca 967
||||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 91 tcaattccatcagtgttgggagagtcatgtggagccagtatagtcaaatttctgatcaac 32
Query: 968 acattgctgcaataaacaggatggatgttcc 998
||||||||||||||||| |||||||||||||
Sbjct: 31 acattgctgcaataaactggatggatgttcc 1
Score = 125 bits (63), Expect = 7e-027
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 410 gacaggcagatccgggagaaggccgagttggggatgcccttgatcagcccagcctccctg 469
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct: 589 gacagacagatccgggagaatgccgagtttgggatgcccttgatcagcccagcctccttg 530
Query: 470 acgttctggccctggacattctttaccgtaagggcgtcgacgatcgggagcgcactccgg 529
| |||||| || || |||||||||| ||| ||| ||| ||||| ||||||||||| ||
Sbjct: 529 atgttctgcccttgaacattctttatcgtcaggctgtccacgatggggagcgcactgtgg 470
Query: 530 ttgtagc 536
|||||||
Sbjct: 469 ttgtagc 463
>gb|BQ161001.1|BQ161001 WHE1061_H06_P11ZT Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1061_H06_P11,
mRNA sequence
Length = 445
Score = 192 bits (97), Expect = 4e-047
Identities = 229/273 (83%)
Strand = Plus / Plus
Query: 264 agcatcaaagcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacg 323
||||||| || |||||||||||||||||| |||| |||||| ||||| |||||||||||
Sbjct: 107 agcatcagagggaatttgtacagaagctcatcccggacgtgctagtcaattctgtgcacg 166
Query: 324 gggacggctgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacag 383
|||| ||||||||||| || || |||| || |||||| |||| ||||| || ||||| |
Sbjct: 167 gggagggctgcacgtccagtgcagcaccactcacagccgcgcatttccatgggcggactg 226
Query: 384 gcgcaccaccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttgggga 443
|||| | ||| || ||| | ||| ||||| |||||||||||||| |||||||| ||||
Sbjct: 227 gcgcgctgccatggagcttaatgttagacagacagatccgggagaatgccgagtttggga 286
Query: 444 tgcccttgatcagcccagcctccctgacgttctggccctggacattctttaccgtaaggg 503
||||||||||||||||||||||| ||| |||||| || || |||||||||| ||| |||
Sbjct: 287 tgcccttgatcagcccagcctccttgatgttctgcccttgaacattctttatcgtcaggc 346
Query: 504 cgtcgacgatcgggagcgcactccggttgtagc 536
||| ||||| ||||||||||| |||||||||
Sbjct: 347 tgtccacgatggggagcgcactgtggttgtagc 379
>gb|CK208347.1|CK208347 FGAS020054 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1141
Score = 184 bits (93), Expect = 9e-045
Identities = 228/273 (83%)
Strand = Plus / Plus
Query: 264 agcatcaaagcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacg 323
||||||| || |||||||||||||||||| |||| |||||| | ||| |||||||||||
Sbjct: 182 agcatcagagggaatttgtacagaagctcatcccggacgtgctaatcaattctgtgcacg 241
Query: 324 gggacggctgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacag 383
|||| ||||||||||| || || |||| || |||||| |||| ||||| || ||||| |
Sbjct: 242 gggagggctgcacgtccagtgcagcaccactcacagccgcgcatttccatgggcggactg 301
Query: 384 gcgcaccaccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttgggga 443
|||| | ||| || ||| | ||| ||||| |||||||||||||| |||||||| ||||
Sbjct: 302 gcgcgctgccatggagcttaatgttagacagacagatccgggagaatgccgagtttggga 361
Query: 444 tgcccttgatcagcccagcctccctgacgttctggccctggacattctttaccgtaaggg 503
||||||||||||||||||||||| ||| |||||| || || |||||||||| ||| |||
Sbjct: 362 tgcccttgatcagcccagcctccttgatgttctgcccttgaacattctttatcgtcaggc 421
Query: 504 cgtcgacgatcgggagcgcactccggttgtagc 536
||| ||||| ||||||||||| |||||||||
Sbjct: 422 tgtccacgatggggagcgcactgtggttgtagc 454
Score = 40.1 bits (20), Expect = 0.34
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 815 ccatactcatcccagccactcttgatggcgat 846
||||| |||||||| | |||||||||||||||
Sbjct: 732 ccatattcatcccatcaactcttgatggcgat 763
>gb|BF200874.1|BF200874 WHE0821-0824_H20_H20ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0821-0824_H20_H20, mRNA sequence
Length = 176
Score = 113 bits (57), Expect = 3e-023
Identities = 99/113 (87%)
Strand = Plus / Minus
Query: 410 gacaggcagatccgggagaaggccgagttggggatgcccttgatcagcccagcctccctg 469
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct: 113 gacagacagatccgggagaatgccgagtttgggatgcccttgatcagcccagcctccttg 54
Query: 470 acgttctggccctggacattctttaccgtaagggcgtcgacgatcgggagcgc 522
| |||||| || || |||||||||| ||| ||| ||| ||||| ||||||||
Sbjct: 53 atgttctgcccttgaacattctttatcgtcaggctgtccacgatggggagcgc 1
>gb|BI750545.1|BI750545 Ta01_06d04_R Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_06d04, mRNA
sequence
Length = 179
Score = 42.1 bits (21), Expect = 0.086
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 1096 cttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctgtgat 1155
||||||||| ||||||||| | || |||| ||| | || | |||||||| ||||| ||
Sbjct: 7 cttccacatgtcccaccacacactaccttggccatcgatggkgccattctcacctgtaat 66
Query: 1156 gacaacatcctgaag 1170
|| ||||||||||||
Sbjct: 67 gaaaacatcctgaag 81
>gb|CD878047.1|CD878047 AZO4.101M15F011002 AZO4 Triticum aestivum cDNA clone AZO4101M15, mRNA
sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.086
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||| ||||||||||| ||||||||
Sbjct: 283 ctgcaatatacaggatggatattccagaa 255
>gb|AJ615116.1|AJ615116 AJ615116 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 11179R, mRNA
sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.086
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||| ||||||||||| ||||||||
Sbjct: 336 ctgcaatatacaggatggatattccagaa 308
>gb|BQ240401.1|BQ240401 TaE05018A07R TaE05 Triticum aestivum cDNA clone TaE05018A07R, mRNA
sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.34
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 808 ggcgattccatactcatcccagccactcttgatggc 843
|||||| || ||||| |||||||| |||||||||||
Sbjct: 497 ggcgatgccgtactcgtcccagccgctcttgatggc 462
>gb|CD868918.1|CD868918 AZO2.110C24F001114 AZO2 Triticum aestivum cDNA clone AZO2110C24,
mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 818 tactcatcccagccactcttgatg 841
||||||||||||||||| ||||||
Sbjct: 433 tactcatcccagccacttttgatg 410
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,136
Number of Sequences: 636343
Number of extensions: 217136
Number of successful extensions: 57727
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57699
Number of HSP's gapped (non-prelim): 18
length of query: 1179
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1159
effective length of database: 354,513,379
effective search space: 410881006261
effective search space used: 410881006261
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)