BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.4
(1628 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ253848.1|BJ253848 BJ253848 Y. Ogihara unpublished cDNA... 119 6e-025
gb|CD454818.1|CD454818 WHE3454_A04_B08ZT CS wheat pre-anthe... 111 2e-022
gb|BJ248931.1|BJ248931 BJ248931 Y. Ogihara unpublished cDNA... 92 1e-016
gb|BF484866.1|BF484866 WHE2320_E08_J16ZS Wheat pre-anthesis... 84 4e-014
gb|BJ244077.1|BJ244077 BJ244077 Y. Ogihara unpublished cDNA... 84 4e-014
gb|BJ247485.1|BJ247485 BJ247485 Y. Ogihara unpublished cDNA... 84 4e-014
gb|BJ253558.1|BJ253558 BJ253558 Y. Ogihara unpublished cDNA... 78 2e-012
gb|CD454470.1|CD454470 WHE2319_C03_F05ZT CS wheat pre-anthe... 76 9e-012
gb|BJ246629.1|BJ246629 BJ246629 Y. Ogihara unpublished cDNA... 62 1e-007
gb|BF483450.1|BF483450 WHE2334_A09_A18ZS Wheat pre-anthesis... 60 5e-007
gb|CD896286.1|CD896286 G174.102G03F010822 G174 Triticum aes... 60 5e-007
gb|CD935721.1|CD935721 OV.102E15F010202 OV Triticum aestivu... 60 5e-007
gb|CD935856.1|CD935856 OV.102K13F010202 OV Triticum aestivu... 60 5e-007
gb|BF202533.1|BF202533 WHE1776_G11_M22ZS Wheat pre-anthesis... 56 8e-006
gb|BF482230.1|BF482230 WHE1798_C12_F24ZS Wheat pre-anthesis... 56 8e-006
gb|CA596773.1|CA596773 wpa1c.pk014.e16 wpa1c Triticum aesti... 56 8e-006
gb|BJ249502.1|BJ249502 BJ249502 Y. Ogihara unpublished cDNA... 54 3e-005
gb|BJ252567.1|BJ252567 BJ252567 Y. Ogihara unpublished cDNA... 54 3e-005
gb|CA741798.1|CA741798 wia1c.pk003.h2 wia1c Triticum aestiv... 54 3e-005
gb|BJ266660.1|BJ266660 BJ266660 Y. Ogihara unpublished cDNA... 52 1e-004
gb|BJ245473.1|BJ245473 BJ245473 Y. Ogihara unpublished cDNA... 50 5e-004
gb|BJ249864.1|BJ249864 BJ249864 Y. Ogihara unpublished cDNA... 50 5e-004
gb|BJ251356.1|BJ251356 BJ251356 Y. Ogihara unpublished cDNA... 50 5e-004
gb|BE498455.1|BE498455 WHE0967_F01_K01ZS Wheat pre-anthesis... 48 0.002
gb|BJ247735.1|BJ247735 BJ247735 Y. Ogihara unpublished cDNA... 48 0.002
gb|BQ902457.1|BQ902457 Ta02_02g09_R Ta02_AAFC_ECORC_Fusariu... 48 0.002
gb|BF473363.1|BF473363 WHE0923_F04_L07ZS Wheat 5-15 DAP spi... 46 0.008
gb|BF484918.1|BF484918 WHE2333_B04_C07ZS Wheat pre-anthesis... 46 0.008
gb|BI479704.1|BI479704 WHE3451_B04_C07ZS Wheat pre-anthesis... 46 0.008
gb|AL810175.1|AL810175 AL810175 d:15 Triticum aestivum cDNA... 46 0.008
gb|BG605368.1|BG605368 WHE2329_A04_A07ZS Wheat pre-anthesis... 44 0.030
gb|CA592895.1|CA592895 wpa1c.pk001.a14 wpa1c Triticum aesti... 44 0.030
gb|BE404485.1|BE404485 WHE0442_H04_O08ZS Wheat etiolated se... 42 0.12
gb|AL811841.1|AL811841 AL811841 d:15 Triticum aestivum cDNA... 42 0.12
gb|BE413623.1|BE413623 SCU001.C10.R990714 ITEC SCU Wheat En... 40 0.47
gb|BJ236635.1|BJ236635 BJ236635 Y. Ogihara unpublished cDNA... 40 0.47
gb|BQ606326.1|BQ606326 BRY_2178 wheat EST endosperm library... 40 0.47
gb|CA704419.1|CA704419 wdk1c.pk012.n23 wdk1c Triticum aesti... 40 0.47
gb|CD454595.1|CD454595 WHE2329_A04_A07ZT CS wheat pre-anthe... 40 0.47
gb|CD888683.1|CD888683 G118.108O04R010925 G118 Triticum aes... 40 0.47
gb|CD936113.1|CD936113 OV.103K18F010205 OV Triticum aestivu... 40 0.47
gb|CK207586.1|CK207586 FGAS019223 Triticum aestivum FGAS: L... 40 0.47
gb|DR736658.1|DR736658 FGAS082028 Triticum aestivum FGAS: L... 40 0.47
>gb|BJ253848.1|BJ253848 BJ253848 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf3i08 3', mRNA sequence
Length = 583
Score = 119 bits (60), Expect = 6e-025
Identities = 155/186 (83%), Gaps = 3/186 (1%)
Strand = Plus / Minus
Query: 944 tccaagatccactacgagaatatcaagatggaggactcagccaaccccatcttcatcgac 1003
||||||||| ||||||||| |||||||||||||||| | | ||||||| ||||||||
Sbjct: 576 tccaagatcacctacgagaacgtcaagatggaggactcgggctaccccattatcatcgac 517
Query: 1004 atgaagtactgccccaacaagttgtgtactgccaacggcgcctccaa---ggtcaccgtc 1060
|||||||||||||||||| | || || |||| |||| | || | ||||||||||
Sbjct: 516 cagaagtactgccccaacaaactttgcacctccaagggcgacgccgacagggtcaccgtc 457
Query: 1061 aaggacgtcaccttcaagaacatcaccggcacctcctccaccccggaggccgttagcctg 1120
|||||||| | ||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 456 aaggacgtttcgttcaaaaacatcaccggcacttcctccacccccgaggccgtcagcctg 397
Query: 1121 ctctgc 1126
||||||
Sbjct: 396 ctctgc 391
>gb|CD454818.1|CD454818 WHE3454_A04_B08ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3454_A04_B08, mRNA sequence
Length = 710
Score = 111 bits (56), Expect = 2e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 1051 ggtcaccgtcaaggacgtcaccttcaagaacatcaccggcacctcctccaccccggaggc 1110
|||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||
Sbjct: 586 ggtcaccgtcaaggacgttaccttcaaaaacatcaccggcacctccgccacccccgaggc 527
Query: 1111 cgttagcctgctctgc 1126
||| ||||||||||||
Sbjct: 526 cgtcagcctgctctgc 511
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 944 tccaagatccactacgagaatatcaagatggaggactcagccaaccccatcttcatcgac 1003
|||||||||||||||||||| ||| ||||||| ||||| | | |||| ||| ||||||||
Sbjct: 696 tccaagatccactacgagaacatcgagatggacgactcgggctacccgatcatcatcgac 637
Query: 1004 atgaagtactgccccaacaa 1023
||||||||||||||||||
Sbjct: 636 cagaagtactgccccaacaa 617
>gb|BJ248931.1|BJ248931 BJ248931 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8k17 5', mRNA sequence
Length = 556
Score = 91.7 bits (46), Expect = 1e-016
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 788 tgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggacgagaaggac 847
|||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct: 12 tgcggccccggccacggcatcagcgtgggcagcctggggcggtacaaggacgagaaggac 71
Query: 848 gt 849
||
Sbjct: 72 gt 73
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 987 accccatcttcatcgacatgaagtactgccccaacaa 1023
|||||||| |||||||| ||||||||||||||||||
Sbjct: 211 accccatcgtcatcgaccagaagtactgccccaacaa 247
Score = 46.1 bits (23), Expect = 0.008
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | |||||| |||||||||||||||||
Sbjct: 391 acgtcaacctcaagtacaccggcacgaacaacaagaccatggc 433
>gb|BF484866.1|BF484866 WHE2320_E08_J16ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2320_E08_J16, mRNA sequence
Length = 472
Score = 83.8 bits (42), Expect = 4e-014
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 641 acggcgcccggggacagccccaacacggatggcatccacatgggcgactc 690
|||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 291 acggcgcccgggaacagccccaacacggacggcatccacatgggcgactc 340
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 722 ggcgtcggcgacgactgcatctccatcggccccgg 756
||||||||||||||||||||||||||||| |||||
Sbjct: 372 ggcgtcggcgacgactgcatctccatcgggcccgg 406
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 497 tacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacg 548
||||||||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 147 tacgactgcaagatcctccccaacagcctggtgctggactacgtgaacaacg 198
>gb|BJ244077.1|BJ244077 BJ244077 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14b21 5', mRNA sequence
Length = 642
Score = 83.8 bits (42), Expect = 4e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 788 tgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggacgagaaggac 847
|||||||| |||||||| |||||| | |||||||| ||||||||||||||||||||||||
Sbjct: 426 tgcggccccggccacgggatcagcgtgggcagcctggggcggtacaaggacgagaaggac 485
Query: 848 gt 849
||
Sbjct: 486 gt 487
Score = 75.8 bits (38), Expect = 9e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 641 acggcgcccggggacagccccaacacggatggcatccacatgggcgactc 690
|||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 279 acggcgccggggaacagccccaacacggacggcatccacatgggcgactc 328
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 722 ggcgtcggcgacgactgcatctccatcggccccgg 756
||||||||||||||||||||||||||||| |||||
Sbjct: 360 ggcgtcggcgacgactgcatctccatcgggcccgg 394
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 497 tacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacg 548
||||||||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 135 tacgactgcaagatcctccccaacagcctggtgctggactacgtgaacaacg 186
>gb|BJ247485.1|BJ247485 BJ247485 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2g18 5', mRNA sequence
Length = 600
Score = 83.8 bits (42), Expect = 4e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 788 tgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggacgagaaggac 847
|||||||| |||||||| |||||| | |||||||| ||||||||||||||||||||||||
Sbjct: 453 tgcggccccggccacgggatcagcgtgggcagcctggggcggtacaaggacgagaaggac 512
Query: 848 gt 849
||
Sbjct: 513 gt 514
Score = 75.8 bits (38), Expect = 9e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 641 acggcgcccggggacagccccaacacggatggcatccacatgggcgactc 690
|||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 306 acggcgccggggaacagccccaacacggacggcatccacatgggcgactc 355
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 722 ggcgtcggcgacgactgcatctccatcggccccgg 756
||||||||||||||||||||||||||||| |||||
Sbjct: 387 ggcgtcggcgacgactgcatctccatcgggcccgg 421
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 497 tacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacg 548
||||||||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 162 tacgactgcaagatcctccccaacagcctggtgctggactacgtgaacaacg 213
>gb|BJ253558.1|BJ253558 BJ253558 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2g18 3', mRNA sequence
Length = 634
Score = 77.8 bits (39), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 788 tgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggacgagaaggac 847
|||||||| |||||||| |||||| | |||||||| ||||||||||||||||||||| ||
Sbjct: 597 tgcggccccggccacgggatcagcgtgggcagcctggggcggtacaaggacgagaagnac 538
Query: 848 gt 849
||
Sbjct: 537 gt 536
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | ||||||||||||||||||||||||
Sbjct: 218 acgtcaacctcaagtacaccggcaccaacaacaagaccatggc 176
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 987 accccatcttcatcgacatgaagtactgccccaacaa 1023
|||||||| |||||||| ||||||||||||||||||
Sbjct: 398 accccatcgtcatcgaccagaagtactgccccaacaa 362
>gb|CD454470.1|CD454470 WHE2319_C03_F05ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2319_C03_F05, mRNA sequence
Length = 649
Score = 75.8 bits (38), Expect = 9e-012
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 641 acggcgcccggggacagccccaacacggatggcatccacatgggcgactc 690
|||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 479 acggcgccggggaacagccccaacacggacggcatccacatgggcgactc 430
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 497 tacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacg 548
||||||||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 623 tacgactgcaagatcctccccaacagcctggtgctggactacgtgaacaacg 572
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | ||||||||||||||||||||||||
Sbjct: 305 acgtcaacctcaagtacaccggcaccaacaacaagaccatggc 263
>gb|BJ246629.1|BJ246629 BJ246629 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24o17 5', mRNA sequence
Length = 656
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 815 ggcagcctagggcggtacaaggacgagaaggacgt 849
|||||||| ||||||||||||||||||||||||||
Sbjct: 7 ggcagcctggggcggtacaaggacgagaaggacgt 41
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | ||||||||||||||||||||||||
Sbjct: 359 acgtcaacctcaagtacaccggcaccaacaacaagaccatggc 401
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 987 accccatcttcatcgacatgaagtactgccccaacaa 1023
|||||||| |||||||| ||||||||||||||||||
Sbjct: 179 accccatcgtcatcgaccagaagtactgccccaacaa 215
>gb|BF483450.1|BF483450 WHE2334_A09_A18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2334_A09_A18, mRNA sequence
Length = 488
Score = 60.0 bits (30), Expect = 5e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 788 tgcggccctggccacggcatcagcatcggcagcctagggcgg 829
|||| ||| |||||||||||||||||||||||||| ||||||
Sbjct: 264 tgcgacccgggccacggcatcagcatcggcagcctggggcgg 305
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||| ||||||||||||||||| || |||||||||
Sbjct: 119 ggcgccgggggacagccccaacaccgacggcatccac 155
>gb|CD896286.1|CD896286 G174.102G03F010822 G174 Triticum aestivum cDNA clone G174102G03,
mRNA sequence
Length = 690
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 642 cggcgcccggggacagccccaacacggatggcatccac 679
||||||| |||||||||||||||||||| |||||||||
Sbjct: 195 cggcgccgggggacagccccaacacggacggcatccac 232
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccat 747
|||||||||||||||||||||
Sbjct: 280 cggcgacgactgcatctccat 300
>gb|CD935721.1|CD935721 OV.102E15F010202 OV Triticum aestivum cDNA clone OV102E15, mRNA
sequence
Length = 693
Score = 60.0 bits (30), Expect = 5e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 788 tgcggccctggccacggcatcagcatcggcagcctagggcgg 829
|||| ||| |||||||||||||||||||||||||| ||||||
Sbjct: 132 tgcgacccgggccacggcatcagcatcggcagcctggggcgg 173
>gb|CD935856.1|CD935856 OV.102K13F010202 OV Triticum aestivum cDNA clone OV102K13, mRNA
sequence
Length = 695
Score = 60.0 bits (30), Expect = 5e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 788 tgcggccctggccacggcatcagcatcggcagcctagggcgg 829
|||| ||| |||||||||||||||||||||||||| ||||||
Sbjct: 132 tgcgacccgggccacggcatcagcatcggcagcctggggcgg 173
>gb|BF202533.1|BF202533 WHE1776_G11_M22ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1776_G11_M22, mRNA sequence
Length = 387
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 497 tacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacg 548
||||||||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 330 tacgactgcaagatcctccccaacagcctggtgctggactacgtgaacaacg 381
>gb|BF482230.1|BF482230 WHE1798_C12_F24ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1798_C12_F24, mRNA sequence
Length = 590
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 497 tacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacg 548
||||||||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 516 tacgactgcaagatcctccccaacagcctggtgctggactacgtgaacaacg 567
>gb|CA596773.1|CA596773 wpa1c.pk014.e16 wpa1c Triticum aestivum cDNA clone wpa1c.pk014.e16
5' end, mRNA sequence
Length = 614
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 497 tacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacg 548
||||||||||||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 516 tacgactgcaagatcctccccaacagcctggtgctggactacgtgaacaacg 567
>gb|BJ249502.1|BJ249502 BJ249502 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf11d16 3', mRNA sequence
Length = 337
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | ||||||||||||||||||||||||
Sbjct: 272 acgtcaacctcaagtacaccggcaccaacaacaagaccatggc 230
>gb|BJ252567.1|BJ252567 BJ252567 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf24o17 3', mRNA sequence
Length = 612
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | ||||||||||||||||||||||||
Sbjct: 271 acgtcaacctcaagtacaccggcaccaacaacaagaccatggc 229
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 987 accccatcttcatcgacatgaagtactgccccaacaa 1023
|||||||| |||||||| ||||||||||||||||||
Sbjct: 451 accccatcgtcatcgaccagaagtactgccccaacaa 415
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 826 gcggtacaaggacgagaaggacgt 849
||||||||||||||||||||||||
Sbjct: 612 gcggtacaaggacgagaaggacgt 589
>gb|CA741798.1|CA741798 wia1c.pk003.h2 wia1c Triticum aestivum cDNA clone wia1c.pk003.h2 5'
end, mRNA sequence
Length = 572
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | ||||||||||||||||||||||||
Sbjct: 274 acgtcaacctcaagtacaccggcaccaacaacaagaccatggc 316
>gb|BJ266660.1|BJ266660 BJ266660 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh27l09 3', mRNA sequence
Length = 677
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggcc 752
||||||||||||||||||||||||||
Sbjct: 671 cggcgacgactgcatctccatcggcc 646
>gb|BJ245473.1|BJ245473 BJ245473 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf19m10 5', mRNA sequence
Length = 553
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 987 accccatcttcatcgacatgaagtactgccccaacaa 1023
|||||||| |||||||| ||||||||||||||||||
Sbjct: 78 accccatcgtcatcgaccagaagtactgccccaacaa 114
Score = 46.1 bits (23), Expect = 0.008
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | |||||| |||||||||||||||||
Sbjct: 258 acgtcaacctcaagtacaccggcacgaacaacaagaccatggc 300
>gb|BJ249864.1|BJ249864 BJ249864 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf14b21 3', mRNA sequence
Length = 619
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 987 accccatcttcatcgacatgaagtactgccccaacaa 1023
|||||||| |||||||| ||||||||||||||||||
Sbjct: 458 accccatcgtcatcgaccagaagtactgccccaacaa 422
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 826 gcggtacaaggacgagaaggacgt 849
||||||||||||||||||||||||
Sbjct: 619 gcggtacaaggacgagaaggacgt 596
>gb|BJ251356.1|BJ251356 BJ251356 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf19m10 3', mRNA sequence
Length = 531
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 987 accccatcttcatcgacatgaagtactgccccaacaa 1023
|||||||| |||||||| ||||||||||||||||||
Sbjct: 448 accccatcgtcatcgaccagaagtactgccccaacaa 412
Score = 46.1 bits (23), Expect = 0.008
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1164 acgtcaacgtcgagtatagcggcaccaacaacaagaccatggc 1206
|||||||| || |||| | |||||| |||||||||||||||||
Sbjct: 268 acgtcaacctcaagtacaccggcacgaacaacaagaccatggc 226
>gb|BE498455.1|BE498455 WHE0967_F01_K01ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0967_F01_K01, mRNA sequence
Length = 610
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 573 tcaactccaagttcttccacatgaacat 600
|||| |||||||||||||||||||||||
Sbjct: 573 tcaattccaagttcttccacatgaacat 600
Score = 48.1 bits (24), Expect = 0.002
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 194 acagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcactgggaag 253
|||||| |||| |||| ||| ||||||||||||| ||||| ||||| |||| |||||
Sbjct: 196 acagactgcaccgaggcggtggaggaggcatgggcctcggcatgcggtagcaccgggaac 255
Query: 254 cagacaatcctcatacccaagggcgacttcct 285
| ||| ||| |||| |||||||| || |||||
Sbjct: 256 ccgaccatcatcatccccaagggtgatttcct 287
>gb|BJ247735.1|BJ247735 BJ247735 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3i08 5', mRNA sequence
Length = 605
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 573 tcaactccaagttcttccacatgaacat 600
|||| |||||||||||||||||||||||
Sbjct: 574 tcaattccaagttcttccacatgaacat 601
Score = 46.1 bits (23), Expect = 0.008
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 207 aggctgtgcaggaggcatgggcatcggcgtgcggcggcactgggaagcagacaatcctca 266
|||| ||| ||||||||||||| ||||| ||||| |||| ||||| | ||| ||| |||
Sbjct: 211 aggcggtggaggaggcatgggcttcggcatgcggtagcaccgggaacccgaccatcatca 270
Query: 267 tacccaagggcgacttcct 285
| |||||||| || |||||
Sbjct: 271 tccccaagggtgatttcct 289
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 tgcgatgagagccttgttcctcctgg 77
|||||||||||||||||| |||||||
Sbjct: 29 tgcgatgagagccttgttgctcctgg 54
Score = 40.1 bits (20), Expect = 0.47
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 491 aagaagtacgactgcaagatccttcccaactcgctggtgatggacttc 538
||||| ||| |||||||||| | || |||||||||||| ||||||||
Sbjct: 492 aagaactacaactgcaagatattgccaaactcgctggtgctggacttc 539
>gb|BQ902457.1|BQ902457 Ta02_02g09_R Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_02g09, mRNA
sequence
Length = 276
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1183 cggcaccaacaacaagaccatggc 1206
||||||||||||||||||||||||
Sbjct: 272 cggcaccaacaacaagaccatggc 249
>gb|BF473363.1|BF473363 WHE0923_F04_L07ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0923_F04_L07, mRNA sequence
Length = 545
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 644 gcgcccggggacagccccaacac 666
|||||||||||||||||||||||
Sbjct: 261 gcgcccggggacagccccaacac 283
>gb|BF484918.1|BF484918 WHE2333_B04_C07ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2333_B04_C07, mRNA sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 573 tcaactccaagttcttccacatgaaca 599
|||| ||||||||||||||||||||||
Sbjct: 550 tcaattccaagttcttccacatgaaca 576
Score = 46.1 bits (23), Expect = 0.008
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 207 aggctgtgcaggaggcatgggcatcggcgtgcggcggcactgggaagcagacaatcctca 266
|||| ||| ||||||||||||| ||||| ||||| |||| ||||| | ||| ||| |||
Sbjct: 187 aggcggtggaggaggcatgggcctcggcatgcggtagcaccgggaacccgaccatcatca 246
Query: 267 tacccaagggcgacttcct 285
| |||||||| || |||||
Sbjct: 247 tccccaagggtgatttcct 265
>gb|BI479704.1|BI479704 WHE3451_B04_C07ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3451_B04_C07, mRNA sequence
Length = 530
Score = 46.1 bits (23), Expect = 0.008
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 207 aggctgtgcaggaggcatgggcatcggcgtgcggcggcactgggaagcagacaatcctca 266
|||| ||| ||||||||||||| ||||| ||||| |||| ||||| | ||| ||| |||
Sbjct: 183 aggcggtggaggaggcatgggcttcggcatgcggtagcaccgggaacccgaccatcatca 242
Query: 267 tacccaagggcgacttcct 285
| |||||||| || |||||
Sbjct: 243 tccccaagggtgatttcct 261
Score = 40.1 bits (20), Expect = 0.47
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 491 aagaagtacgactgcaagatccttcccaactcgctggtgatggacttc 538
||||| ||| |||||||||| | || |||||||||||| ||||||||
Sbjct: 464 aagaactacaactgcaagatattgccaaactcgctggtgctggacttc 511
>gb|AL810175.1|AL810175 AL810175 d:15 Triticum aestivum cDNA clone E01_d15_plate_7, mRNA
sequence
Length = 566
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 644 gcgcccggggacagccccaacac 666
|||||||||||||||||||||||
Sbjct: 62 gcgcccggggacagccccaacac 84
>gb|BG605368.1|BG605368 WHE2329_A04_A07ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2329_A04_A07, mRNA sequence
Length = 564
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 731 gacgactgcatctccatcggcc 752
||||||||||||||||||||||
Sbjct: 496 gacgactgcatctccatcggcc 517
Score = 44.1 bits (22), Expect = 0.030
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 644 gcgcccggggacagccccaacacggatggcatccacat 681
||||||| | ||||||| ||||| ||||||||||||||
Sbjct: 409 gcgcccgtgaacagcccaaacacagatggcatccacat 446
>gb|CA592895.1|CA592895 wpa1c.pk001.a14 wpa1c Triticum aestivum cDNA clone
wpa1c.pk001.a14 5' end, mRNA sequence
Length = 474
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 tgcgatgagagccttgttcctcctgg 77
|||||||||||||||||| |||||||
Sbjct: 41 tgcgatgagagccttgttgctcctgg 66
>gb|BE404485.1|BE404485 WHE0442_H04_O08ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0442_H04_O08, mRNA
sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||| | ||||||||||||||| || |||||||||
Sbjct: 104 ggcgccggcggacagccccaacaccgacggcatccac 140
>gb|AL811841.1|AL811841 AL811841 d:15 Triticum aestivum cDNA clone B03_d15_plate_17, mRNA
sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccat 747
|||||||||||||||||||||
Sbjct: 67 cggcgacgactgcatctccat 87
Score = 40.1 bits (20), Expect = 0.47
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 779 ggcgtgacctgcggccctggccacggcatcag 810
||||| || ||||||||||| |||||||||||
Sbjct: 119 ggcgtcacgtgcggccctgggcacggcatcag 150
>gb|BE413623.1|BE413623 SCU001.C10.R990714 ITEC SCU Wheat Endosperm Library Triticum
aestivum cDNA clone SCU001.C10, mRNA sequence
Length = 758
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 786 cctgcggccctggccacggcatcagcat 813
||||||| ||||||| ||||||||||||
Sbjct: 278 cctgcgggcctggcctcggcatcagcat 305
>gb|BJ236635.1|BJ236635 BJ236635 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe22h09 5', mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.47
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccggga 758
||||| ||| ||| ||||||||||||||||||
Sbjct: 353 cggcggcgaatgcgtctccatcggccccggga 384
>gb|BQ606326.1|BQ606326 BRY_2178 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 786 cctgcggccctggccacggcatcagcat 813
||||||| ||||||| ||||||||||||
Sbjct: 155 cctgcgggcctggcctcggcatcagcat 182
>gb|CA704419.1|CA704419 wdk1c.pk012.n23 wdk1c Triticum aestivum cDNA clone wdk1c.pk012.n23 5'
end, mRNA sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1231 caccaagggttgcctcaaggagcttgca 1258
|||||||| ||||||||||||||||||
Sbjct: 371 caccaaggagtgcctcaaggagcttgca 344
>gb|CD454595.1|CD454595 WHE2329_A04_A07ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2329_A04_A07, mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.47
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 986 aaccccatcttcatcgacatgaagtactgccc 1017
||||||||| |||||||| ||||||||||||
Sbjct: 497 aaccccatcatcatcgaccagaagtactgccc 466
>gb|CD888683.1|CD888683 G118.108O04R010925 G118 Triticum aestivum cDNA clone G118108O04,
mRNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 786 cctgcggccctggccacggcatcagcat 813
||||||| ||||||| ||||||||||||
Sbjct: 649 cctgcgggcctggcctcggcatcagcat 622
>gb|CD936113.1|CD936113 OV.103K18F010205 OV Triticum aestivum cDNA clone OV103K18, mRNA
sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 643 ggcgcccggggacagccccaacac 666
|||||| |||||||||||||||||
Sbjct: 341 ggcgccgggggacagccccaacac 364
>gb|CK207586.1|CK207586 FGAS019223 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1119
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 786 cctgcggccctggccacggcatcagcat 813
||||||| ||||||| ||||||||||||
Sbjct: 405 cctgcgggcctggcctcggcatcagcat 432
>gb|DR736658.1|DR736658 FGAS082028 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1118
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 786 cctgcggccctggccacggcatcagcat 813
||||||| ||||||| ||||||||||||
Sbjct: 695 cctgcgggcctggcctcggcatcagcat 668
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 411,822
Number of Sequences: 636343
Number of extensions: 411822
Number of successful extensions: 117245
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117066
Number of HSP's gapped (non-prelim): 179
length of query: 1628
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1608
effective length of database: 354,513,379
effective search space: 570057513432
effective search space used: 570057513432
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)