BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619423.2.1
(886 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK199443.1|CK199443 FGAS007942 Triticum aestivum FGAS: L... 266 2e-069
gb|CD928159.1|CD928159 GR45.104C12R010608 GR45 Triticum aes... 192 3e-047
gb|BJ280998.1|BJ280998 BJ280998 Y. Ogihara unpublished cDNA... 178 4e-043
gb|BJ281022.1|BJ281022 BJ281022 Y. Ogihara unpublished cDNA... 178 4e-043
gb|BJ286059.1|BJ286059 BJ286059 Y. Ogihara unpublished cDNA... 178 4e-043
gb|BQ744105.1|BQ744105 WHE4111_G08_N15ZS Wheat salt-stresse... 174 7e-042
gb|BQ837961.1|BQ837961 WHE2905_A03_A05ZS Wheat aluminum-str... 174 7e-042
gb|CD937391.1|CD937391 OV.106O01R010430 OV Triticum aestivu... 174 7e-042
gb|CK193153.1|CK193153 FGAS001567 Triticum aestivum FGAS: L... 161 1e-037
gb|CK193498.1|CK193498 FGAS001912 Triticum aestivum FGAS: L... 159 4e-037
gb|CA621430.1|CA621430 wl1n.pk0065.c8 wl1n Triticum aestivu... 153 2e-035
gb|BQ806052.1|BQ806052 WHE3574_C01_F02ZS Wheat developing g... 151 1e-034
gb|CD882469.1|CD882469 F1.106O03R010628 F1 Triticum aestivu... 141 9e-032
gb|BE415761.1|BE415761 MWL037.B06000418 ITEC MWL Wheat Root... 139 4e-031
gb|AJ614336.1|AJ614336 AJ614336 Triticum turgidum subsp. du... 109 3e-022
gb|CA695532.1|CA695532 wlmk8.pk0011.a3 wlmk8 Triticum aesti... 101 8e-020
gb|BJ286085.1|BJ286085 BJ286085 Y. Ogihara unpublished cDNA... 86 5e-015
gb|CA678229.1|CA678229 wlm12.pk0025.g2 wlm12 Triticum aesti... 84 2e-014
gb|CA625239.1|CA625239 wl1n.pk0129.d3 wl1n Triticum aestivu... 82 7e-014
gb|CA691704.1|CA691704 wlm96.pk054.i11 wlm96 Triticum aesti... 62 7e-008
gb|CV763616.1|CV763616 FGAS057999 Triticum aestivum FGAS: L... 62 7e-008
gb|CA616478.1|CA616478 wl1n.pk0003.f4 wl1n Triticum aestivu... 54 2e-005
gb|CV782592.1|CV782592 FGAS077005 Triticum aestivum FGAS: L... 54 2e-005
gb|CA614785.1|CA614785 wr1.pk177.h6 wr1 Triticum aestivum c... 52 7e-005
>gb|CK199443.1|CK199443 FGAS007942 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 860
Score = 266 bits (134), Expect = 2e-069
Identities = 388/470 (82%), Gaps = 2/470 (0%)
Strand = Plus / Minus
Query: 75 ctcctgaacaacccaccaagttgtattgcgccactgatggccgtcaaacgctacagcctc 134
||||||| ||||||||||| ||||||| ||||| ||||| || ||| ||| ||||| |
Sbjct: 819 ctcctgacaaacccaccaagctgtattgtgccaccgatgggcgacaacggctgcagcccc 760
Query: 135 cactaccagatgggtactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgg 194
| || ||||| || |||||||| |||||||||||||| || || || || || ||||| |
Sbjct: 759 cgctgccagaaggttactttgggaatgtcatcttcactgccaccccgctcgccgaggcag 700
Query: 195 gcaaggtgaccagtgagctggcagaaggagcagcagtcatcca-gggagcactggatagg 253
|||||||||| || | |||||||||||||||||| |||||||| |||||| || || |||
Sbjct: 699 gcaaggtgacgagcgggctggcagaaggagcagc-gtcatccaagggagcgctagacagg 641
Query: 254 atggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtca 313
||| || ||||||||||| ||||| | |||||||||||| | || ||||| ||||||
Sbjct: 640 atgaccagcgactactgccaatcagccctggactacctggagatgcagccggacctgtca 581
Query: 314 gcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtg 373
||| | || ||||||||||| || ||||| ||||| ||||| || |||||||||||||||
Sbjct: 580 gcattggtccgtggagcgcacactttccggtgccccaacctcggcctcaccagctgggtg 521
Query: 374 cgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggt 433
||||| || ||||| || || || ||||| ||||| ||||| ||||||||||| || ||
Sbjct: 520 cgcctgccgatccacgacgccgatttcggctgggggcggccggtgttcatgggtcctggc 461
Query: 434 ggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctg 493
||||| ||||| || || |||||||| |||||||| || || | ||||||||||||
Sbjct: 460 ggcatcgcgtacgagggactggcgttcgtcctcccgagcgcgaccaaggacggcagcctg 401
Query: 494 tccattgctatctcgttgcaggctgagcacatggagaagttccggaagct 543
||||| || ||||| |||||||| |||||||||||||||||| |||||||
Sbjct: 400 tccatcgccatctcattgcaggcagagcacatggagaagttcaggaagct 351
>gb|CD928159.1|CD928159 GR45.104C12R010608 GR45 Triticum aestivum cDNA clone GR45104C12,
mRNA sequence
Length = 635
Score = 192 bits (97), Expect = 3e-047
Identities = 241/289 (83%)
Strand = Plus / Minus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 524 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtc 465
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || ||||| ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 464 ggcgctggtccgtggcgcgcacacgttccggtgccccaaccttgggctcaccagctgggt 405
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || ||||| || || |||||||| ||||||||||| ||||||||||| || ||
Sbjct: 404 gcgcctgcccatccacgacgccgacttcggctggggccggcccgtgttcatgggccccgg 345
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || ||||| || ||||| || || | |||||||||||||
Sbjct: 344 cggcatcgcgtacgaggggctcgcgttcgtgctccccagcgccagccgcgacggcagcct 285
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 284 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 236
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgacc 205
||||| ||||| ||||||||||| || || || || || | ||||||||||||||||
Sbjct: 628 tacttcggcaacgtcatcttcacggccacgccgctcgcggtggcgggcaaggtgacc 572
>gb|BJ280998.1|BJ280998 BJ280998 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr20b03 5', mRNA sequence
Length = 509
Score = 178 bits (90), Expect = 4e-043
Identities = 234/282 (82%)
Strand = Plus / Plus
Query: 262 cgactactgccgctcagcgttagactacctggagcttcaaccggatctgtcagcacttgt 321
||||||||||| ||||| | |||||||||||| | || ||||| ||||||||| | ||
Sbjct: 26 cgactactgccaatcagccctggactacctggagatgcagccggacctgtcagcattggt 85
Query: 322 gcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcc 381
||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||| ||
Sbjct: 86 ccgtggagcgcacactttccggtgccccaacctcggcctcaccagctgggtgcgcctgcc 145
Query: 382 tatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgc 441
||||| || || || ||||| ||||| ||||| ||||||||||| || || ||||| ||
Sbjct: 146 gatccacgacgccgatttcggctgggggcggccggtgttcatgggtcctggcggcatcgc 205
Query: 442 gtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgc 501
||| || || |||||||| |||||||| || || | ||||||||||||||||| ||
Sbjct: 206 gtacgagggactggcgttcgtcctcccgagcgcgaccaaggacggcagcctgtccatcgc 265
Query: 502 tatctcgttgcaggctgagcacatggagaagttccggaagct 543
||||| |||||||| |||||||||||||||||| |||||||
Sbjct: 266 catctcattgcaggcagagcacatggagaagttcaggaagct 307
>gb|BJ281022.1|BJ281022 BJ281022 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr20d01 5', mRNA sequence
Length = 508
Score = 178 bits (90), Expect = 4e-043
Identities = 234/282 (82%)
Strand = Plus / Plus
Query: 262 cgactactgccgctcagcgttagactacctggagcttcaaccggatctgtcagcacttgt 321
||||||||||| ||||| | |||||||||||| | || ||||| ||||||||| | ||
Sbjct: 26 cgactactgccaatcagccctggactacctggagatgcagccggacctgtcagcattggt 85
Query: 322 gcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcc 381
||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||| ||
Sbjct: 86 ccgtggagcgcacactttccggtgccccaacctcggcctcaccagctgggtgcgcctgcc 145
Query: 382 tatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgc 441
||||| || || || ||||| ||||| ||||| ||||||||||| || || ||||| ||
Sbjct: 146 gatccacgacgccgatttcggctgggggcggccggtgttcatgggtcctggcggcatcgc 205
Query: 442 gtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgc 501
||| || || |||||||| |||||||| || || | ||||||||||||||||| ||
Sbjct: 206 gtacgagggactggcgttcgtcctcccgagcgcgaccaaggacggcagcctgtccatcgc 265
Query: 502 tatctcgttgcaggctgagcacatggagaagttccggaagct 543
||||| |||||||| |||||||||||||||||| |||||||
Sbjct: 266 catctcattgcaggcagagcacatggagaagttcaggaagct 307
>gb|BJ286059.1|BJ286059 BJ286059 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr19b03 3', mRNA sequence
Length = 477
Score = 178 bits (90), Expect = 4e-043
Identities = 234/282 (82%)
Strand = Plus / Minus
Query: 262 cgactactgccgctcagcgttagactacctggagcttcaaccggatctgtcagcacttgt 321
||||||||||| ||||| | |||||||||||| | || ||||| ||||||||| | ||
Sbjct: 452 cgactactgccaatcagccctggactacctggagatgcagccggacctgtcagcattggt 393
Query: 322 gcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcc 381
||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||| ||
Sbjct: 392 ccgtggagcgcacactttccggtgccccaacctcggcctcaccagctgggtgcgcctgcc 333
Query: 382 tatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgc 441
||||| || || || ||||| ||||| ||||| ||||||||||| || || ||||| ||
Sbjct: 332 gatccacgacgccgatttcggctgggggcggccggtgttcatgggtcctggcggcatcgc 273
Query: 442 gtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgc 501
||| || || |||||||| |||||||| || || | ||||||||||||||||| ||
Sbjct: 272 gtacgagggactggcgttcgtcctcccgagcgcgaccaaggacggcagcctgtccatcgc 213
Query: 502 tatctcgttgcaggctgagcacatggagaagttccggaagct 543
||||| |||||||| |||||||||||||||||| |||||||
Sbjct: 212 catctcattgcaggcagagcacatggagaagttcaggaagct 171
>gb|BQ744105.1|BQ744105 WHE4111_G08_N15ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4111_G08_N15, mRNA sequence
Length = 573
Score = 174 bits (88), Expect = 7e-042
Identities = 229/276 (82%)
Strand = Plus / Plus
Query: 266 tactgccgctcagcgttagactacctggagcttcaaccggatctgtcagcacttgtgcgt 325
||||||||||| ||| | |||||||||||| | || ||||| ||||| || || || |||
Sbjct: 20 tactgccgctcggcgctggactacctggagatgcagccggacctgtcggcgctggtccgt 79
Query: 326 ggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatc 385
|| ||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 80 ggcgcgcacacgttccggtgccccaaccttgggctcaccagctgggtgcgcctgcccatc 139
Query: 386 catgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtat 445
|| || || |||||||| ||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 140 cacgacgccgacttcggctggggccggcccgtgttcatgggccccggcggcatcgcgtac 199
Query: 446 gaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatc 505
|| || || ||||| || ||||| || || | |||||||||||||||| | || |||
Sbjct: 200 gaggggctcgcgttcgtgctccccagcgccagccgcgacggcagcctgtcggtggccatc 259
Query: 506 tcgttgcaggctgagcacatggagaagttccggaag 541
||| ||||||| ||||| ||||||||||||||||||
Sbjct: 260 tcgctgcaggccgagcatatggagaagttccggaag 295
>gb|BQ837961.1|BQ837961 WHE2905_A03_A05ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2905_A03_A05, mRNA
sequence
Length = 644
Score = 174 bits (88), Expect = 7e-042
Identities = 238/288 (82%)
Strand = Plus / Plus
Query: 254 atggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtca 313
||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 260 atggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtcg 319
Query: 314 gcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtg 373
|| || || || || ||||| || ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 320 gcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggtg 379
Query: 374 cgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggt 433
||||| || ||||| ||||| |||||||| ||||||||||| || |||||||| || ||
Sbjct: 380 cgcctgcccatccacgatgccgacttcggctggggccggcccgtcttcatgggccccggc 439
Query: 434 ggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctg 493
||||| ||||| || || || || || || ||||| || || | ||||||||||||||
Sbjct: 440 ggcatcgcgtacgaggggctcgcattcgtgctccccagcgccagccgcgacggcagcctg 499
Query: 494 tccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
|| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 500 tcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 547
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgacc 205
||||| ||||| ||||||||||| || || || || || | ||||||||||||||||
Sbjct: 155 tacttcggcaacgtcatcttcacggccacgccgctcgcggtggcgggcaaggtgacc 211
>gb|CD937391.1|CD937391 OV.106O01R010430 OV Triticum aestivum cDNA clone OV106O01, mRNA
sequence
Length = 595
Score = 174 bits (88), Expect = 7e-042
Identities = 238/288 (82%)
Strand = Plus / Minus
Query: 254 atggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtca 313
||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 530 atggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtcg 471
Query: 314 gcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtg 373
|| || || || || ||||| || ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 470 gcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggtg 411
Query: 374 cgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggt 433
||||| || ||||| ||||| |||||||| ||||||||||| || |||||||| || ||
Sbjct: 410 cgcctgcccatccacgatgccgacttcggctggggccggcccgtcttcatgggccccggc 351
Query: 434 ggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctg 493
||||| ||||| || || || || || || ||||| || || | ||||||||||||||
Sbjct: 350 ggcatcgcgtacgaggggctcgcattcgtgctccccagcgccagccgcgacggcagcctg 291
Query: 494 tccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
|| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 290 tcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 243
>gb|CK193153.1|CK193153 FGAS001567 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 842
Score = 161 bits (81), Expect = 1e-037
Identities = 236/288 (81%)
Strand = Plus / Minus
Query: 254 atggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtca 313
||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 699 atggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtcg 640
Query: 314 gcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtg 373
|| || || || || ||||| || || || |||| ||||| ||||||||||||||||||
Sbjct: 639 gcgctggtccgcggngcgcacacatttcggggccccaacctcgggctcaccagctgggtg 580
Query: 374 cgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggt 433
||||| || ||||| ||||| |||||||| ||||||||||| || |||||||| || ||
Sbjct: 579 cgcctgcccatccacgatgccgacttcggctggggccggcccgtcttcatgggccccggc 520
Query: 434 ggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctg 493
||||| ||||| || || || || || || ||||| || || | ||||||||||||||
Sbjct: 519 ggcatcgcgtacgaggggctcgcattcgtgctccccagcgccagccgcgacggcagcctg 460
Query: 494 tccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
|| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 459 tcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 412
>gb|CK193498.1|CK193498 FGAS001912 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 832
Score = 159 bits (80), Expect = 4e-037
Identities = 236/288 (81%)
Strand = Plus / Plus
Query: 254 atggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtca 313
||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 201 atggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtcg 260
Query: 314 gcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtg 373
|| || || || || ||||| || ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 261 gcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggtg 320
Query: 374 cgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggt 433
||||| || ||||| ||||| |||||||| ||||||||||| || |||||||| || ||
Sbjct: 321 cgcctgcccatccacgatgccgacttcggctggggccggcccgtcttcatgggccccggc 380
Query: 434 ggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctg 493
||||| ||||| || || || || || || ||||| || || | ||||||||||||||
Sbjct: 381 ggcatcgcgtacgaggggctcgcattcgtgctccccagcgccagccgcgacggcagcctg 440
Query: 494 tccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
|| | || |||| ||||||| ||||| ||||||||||||||||||
Sbjct: 441 tcggtggcctcctcgctgcaggccgagcatatggagaagttccggaag 488
>gb|CA621430.1|CA621430 wl1n.pk0065.c8 wl1n Triticum aestivum cDNA clone wl1n.pk0065.c8 5'
end, mRNA sequence
Length = 502
Score = 153 bits (77), Expect = 2e-035
Identities = 215/260 (82%), Gaps = 1/260 (0%)
Strand = Plus / Plus
Query: 284 gactacctggagcttcaaccggatctgtcagcacttgtgcgtggagcgcataccttccgc 343
|||||||||||||| || ||||| ||||| || || || || || ||||| || |||||
Sbjct: 4 gactacctggagctgcagccggacctgtcggcgctggtccgcggggcgcacacgttccgg 63
Query: 344 tgcccgaacctagggctcaccagctgggtgcgccttcctatccatgatgctgacttcgga 403
||||| ||||| ||||||||||||||||||||||| || ||||| || || |||| |||
Sbjct: 64 tgccccaacctggggctcaccagctgggtgcgcctgcccatccacgacgcggactncggg 123
Query: 404 tggggccggcctgtgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtc 463
||||| ||||| ||||||||||| || || ||||| || || || || || ||||| ||
Sbjct: 124 tgggggcggcccgtgttcatgggccccggcggcatcgcctacgaggggctcgcgttcgtg 183
Query: 464 ctcccaagtgcaaatggcgacggcagcctgtccattgctatctcgttgcaggctgagcac 523
||||| || || || ||||||||||||||||| | || |||||| ||||||| ||||||
Sbjct: 184 ctccccagcgccaaccgcgacggcagcctgtccgtggccatctcgctgcaggcggagcac 243
Query: 524 atggagaagttccggaagct 543
|||||||| |||||||||||
Sbjct: 244 atggagaa-ttccggaagct 262
>gb|BQ806052.1|BQ806052 WHE3574_C01_F02ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3574_C01_F02, mRNA sequence
Length = 630
Score = 151 bits (76), Expect = 1e-034
Identities = 163/192 (84%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 397 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtc 456
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || ||||| ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 457 ggcgctggtccgtggcgcgcacacgttccggtgccccaaccttgggctcaccagctgggt 516
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || ||||| || || |||||||| ||||||||||| ||||||||||| || ||
Sbjct: 517 gcgcctgcccatccacgacgccgacttcggctggggccggcccgtgttcatgggccccgg 576
Query: 433 tggcattgcgta 444
||||| |||||
Sbjct: 577 cggcatcgcgta 588
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgacc 205
||||| ||||| ||||||||||| || || || || || | ||||||||||||||||
Sbjct: 293 tacttcggcaacgtcatcttcacggccacgccgctcgcggtggcgggcaaggtgacc 349
>gb|CD882469.1|CD882469 F1.106O03R010628 F1 Triticum aestivum cDNA clone F1106O03, mRNA
sequence
Length = 486
Score = 141 bits (71), Expect = 9e-032
Identities = 182/219 (83%)
Strand = Plus / Minus
Query: 323 cgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcct 382
||||| ||||| || ||||| ||||| |||| ||||||||||||||||||||||| ||
Sbjct: 479 cgtggcgcgcacacgttccggtgcccccaccttgggctcaccagctgggtgcgcctgccc 420
Query: 383 atccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcg 442
||||| || || |||||||| ||||||||||| ||||||||||| || || ||||| |||
Sbjct: 419 atccacgacgccgacttcggctggggccggcccgtgttcatgggccccggcggcatcgcg 360
Query: 443 tatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgct 502
|| || || || ||||| || ||||| || || | |||||||||||||||| | ||
Sbjct: 359 tacgaggggctcgcgttcgtgctccccagcgccagccgcgacggcagcctgtcggtggcc 300
Query: 503 atctcgttgcaggctgagcacatggagaagttccggaag 541
|||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 299 atctcgctgcaggccgagcatatggagaagttccggaag 261
>gb|BE415761.1|BE415761 MWL037.B06000418 ITEC MWL Wheat Root Library Triticum aestivum cDNA
clone MWL037.B06, mRNA sequence
Length = 298
Score = 139 bits (70), Expect = 4e-031
Identities = 161/192 (83%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 86 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtc 145
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || ||||| ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 146 ggcgctggtccgtggcgcgcacacgttccggtgccccaaccttgggctcaccagctgggt 205
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 206 gcgcctgcccatncacgacgccgacttnggctggggccggcccgtgttcatgggccccgg 265
Query: 433 tggcattgcgta 444
||||| |||||
Sbjct: 266 cggcatcgcgta 277
>gb|AJ614336.1|AJ614336 AJ614336 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 10068R, mRNA
sequence
Length = 352
Score = 109 bits (55), Expect = 3e-022
Identities = 136/162 (83%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 254 atggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtca 313
||||||||||| ||||||||||| ||| | |||||||||||| | || ||||| |||||
Sbjct: 180 atggacaacgagtactgccgctcggcgctggactacctggagatgcagccggacctgtcg 239
Query: 314 gcacttgtgcgtggagcgcatacc-ttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 240 gcgctggtccgcggcgcgcacacagttccggtgccccaacctcgggctcaccagctgggt 299
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcc 414
|||||| || ||||| ||||| |||||||| ||| |||||||
Sbjct: 300 gcgcctgcccatccacgatgccgacttcggctggngccggcc 341
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgacc 205
||||| ||||| ||||||||||| || || || || || | ||||||||||||||||
Sbjct: 75 tacttcggcaacgtcatcttcacggccacgccgctcgcggtggcgggcaaggtgacc 131
>gb|CA695532.1|CA695532 wlmk8.pk0011.a3 wlmk8 Triticum aestivum cDNA clone wlmk8.pk0011.a3
5' end, mRNA sequence
Length = 678
Score = 101 bits (51), Expect = 8e-020
Identities = 135/163 (82%)
Strand = Plus / Plus
Query: 9 ggttcagcacatatgcagtgctagcggcacatgtctggaaatgtgtctcccttgcacgca 68
|||||||||| |||||||| |||| |||||||| ||| || |||||| |||| ||||
Sbjct: 216 ggttcagcacgtatgcagtcttagctgcacatgtttggcgctgcgtctccattgcgcgca 275
Query: 69 gcctacctcctgaacaacccaccaagttgtattgcgccactgatggccgtcaaacgctac 128
||| |||||||||||||||||||| ||||||| ||||| ||||| || ||| ||| |
Sbjct: 276 accttgctcctgaacaacccaccaagctgtattgtgccaccgatgggcgacaacggctgc 335
Query: 129 agcctccactaccagatgggtactttggcaatgtcatcttcac 171
|||| || || ||||| || |||||||| ||||||||||||||
Sbjct: 336 agcccccgctgccagaaggttactttgggaatgtcatcttcac 378
>gb|BJ286085.1|BJ286085 BJ286085 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr19d01 3', mRNA sequence
Length = 285
Score = 85.7 bits (43), Expect = 5e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 417 tgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaa 476
|||||||||| || || ||||| ||||| || || |||||||| |||||||| || || |
Sbjct: 285 tgttcatgggtcctggcggcatcgcgtacgagggactggcgttcgtcctcccgagcgcga 226
Query: 477 atggcgacggcagcctgtccattgctatctcgttgcaggctgagcacatggagaagttcc 536
||||||||||||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct: 225 ccaaggacggcagcctgtccatcgccatctcattgcaggcagagcacatggagaagttca 166
Query: 537 ggaagct 543
|||||||
Sbjct: 165 ggaagct 159
>gb|CA678229.1|CA678229 wlm12.pk0025.g2 wlm12 Triticum aestivum cDNA clone wlm12.pk0025.g2
5' end, mRNA sequence
Length = 617
Score = 83.8 bits (42), Expect = 2e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 482 gacggcagcctgtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||||||||||| ||||| || |||||||||||||| |||||||||||||||||| |||||
Sbjct: 260 gacggcagcctctccatcgccatctcgttgcaggcggagcacatggagaagttcaggaag 201
Query: 542 ct 543
||
Sbjct: 200 ct 199
>gb|CA625239.1|CA625239 wl1n.pk0129.d3 wl1n Triticum aestivum cDNA clone wl1n.pk0129.d3 5'
end, mRNA sequence
Length = 318
Score = 81.8 bits (41), Expect = 7e-014
Identities = 114/137 (83%), Gaps = 1/137 (0%)
Strand = Plus / Plus
Query: 252 ggatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgt 311
|||||||| ||| |||||||| |||||| | |||||||||||||| || ||||| ||||
Sbjct: 180 ggatggacgacgggtactgccggtcagcgctggactacctggagctgcagccggacctgt 239
Query: 312 cagcacttgtgcgtggag-cgcataccttccgctgcccgaacctagggctcaccagctgg 370
| || || || || || | |||| || ||||| ||||| ||||| |||||||||||||||
Sbjct: 240 cggcgctggtccgcgggggcgcacacgttccggtgccccaacctggggctcaccagctgg 299
Query: 371 gtgcgccttcctatcca 387
|||||||| || |||||
Sbjct: 300 gtgcgcctgcccatcca 316
>gb|CA691704.1|CA691704 wlm96.pk054.i11 wlm96 Triticum aestivum cDNA clone wlm96.pk054.i11
5' end, mRNA sequence
Length = 456
Score = 61.9 bits (31), Expect = 7e-008
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 480 gcgacggcagcctgtccattgctatctcgttgcaggctgagcacatggagaagttccgga 539
|||||||||||||||| | || |||||| ||||| | ||||| ||||||||||||||||
Sbjct: 267 gcgacggcagcctgtcggtggccatctcgctgcagnccgagcatatggagaagttccgga 208
Query: 540 ag 541
||
Sbjct: 207 ag 206
>gb|CV763616.1|CV763616 FGAS057999 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 832
Score = 61.9 bits (31), Expect = 7e-008
Identities = 101/123 (82%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 254 atggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtca 313
||||||||||| ||||||||||| ||| | |||||||||||| | || || | |||||
Sbjct: 711 atggacaacgagtactgccgctcggcgctggactacctggagatgcagcccggactgtcg 770
Query: 314 gcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtg 373
|| || || || || ||||| || ||||| ||||| |||| ||||||||||||||||||
Sbjct: 771 gcgctggtccgcggcgcgcacacgttccggtgccc-cacctcgggctcaccagctgggtg 829
Query: 374 cgc 376
|||
Sbjct: 830 cgc 832
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgacc 205
||||| ||||| ||||||||||| || || || || || | ||||||||||||||||
Sbjct: 606 tacttcggcaacgtcatcttcacggccacgccgctcgcggtggcgggcaaggtgacc 662
>gb|CA616478.1|CA616478 wl1n.pk0003.f4 wl1n Triticum aestivum cDNA clone wl1n.pk0003.f4 5'
end, mRNA sequence
Length = 159
Score = 54.0 bits (27), Expect = 2e-005
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 284 gactacctggagcttcaaccggatctgtcagcacttgtgcgtggagcgcataccttccgc 343
|||||||||||||| || ||||| |||| || || || || || ||||| || ||||
Sbjct: 4 gactacctggagctgcagccggacctgtnggcgctggtccgcggggcgcacacgttccng 63
Query: 344 tgcccgaacctagggctcaccagctgggtgcgcct 378
|||| ||||| |||||||||||| ||||||||||
Sbjct: 64 ngccccaacctggggctcaccagcngggtgcgcct 98
>gb|CV782592.1|CV782592 FGAS077005 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 857
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggag 295
|||||||||||| ||||||||||| ||| | ||||||||||||
Sbjct: 562 gatggacaacgagtactgccgctcggcgctggactacctggag 604
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgacc 205
||||| ||||| ||||||||||| || || || || || | ||||||||||||||||
Sbjct: 458 tacttcggcaacgtcatcttcacggccacgccgctcgcggtggcgggcaaggtgacc 514
>gb|CA614785.1|CA614785 wr1.pk177.h6 wr1 Triticum aestivum cDNA clone wr1.pk177.h6 5' end,
mRNA sequence
Length = 531
Score = 52.0 bits (26), Expect = 7e-005
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 480 gcgacggcagcctgtccattgctatctcgttgcaggctgagcacatggagaagttccgga 539
|||||||||||||||| | || |||||| ||||||| ||||| |||||| |||||||||
Sbjct: 288 gcgacggcagcctgtcggtggccatctcgctgcaggccgagcatatggag-agttccgga 230
Query: 540 ag 541
||
Sbjct: 229 ag 228
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,493
Number of Sequences: 636343
Number of extensions: 146493
Number of successful extensions: 40019
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39960
Number of HSP's gapped (non-prelim): 50
length of query: 886
length of database: 367,240,239
effective HSP length: 19
effective length of query: 867
effective length of database: 355,149,722
effective search space: 307914808974
effective search space used: 307914808974
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)